Wall clock time and date at job start Mon Mar 30 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.09002 * 115.55911 * 29.29701 * 3 2 1 5 5 C 1.53000 * 117.50223 * 243.61012 * 3 2 1 6 6 C 1.52997 * 117.49889 * 174.98273 * 3 2 1 7 7 H 1.08997 * 117.50044 * 214.98097 * 6 3 2 8 8 C 1.53001 * 117.51528 * 0.02562 * 6 3 2 9 9 N 1.46905 * 109.46926 * 185.01631 * 8 6 3 10 10 C 1.46896 * 111.00305 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47582 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.46942 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.46906 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00104 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99763 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00446 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47440 * 59.99852 * 18 16 14 20 20 H 1.48501 * 109.47437 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46985 * 300.00093 * 18 16 14 22 22 H 1.08998 * 109.47022 * 300.00082 * 1 2 3 23 23 H 1.09004 * 109.46935 * 59.99813 * 1 2 3 24 24 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46714 * 240.00621 * 2 1 3 26 26 H 1.08994 * 109.46846 * 120.00349 * 2 1 3 27 27 H 1.08990 * 117.49990 * 145.01974 * 5 3 2 28 28 H 1.09004 * 117.49237 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.47004 * 305.00995 * 8 6 3 30 30 H 1.08997 * 109.47375 * 65.01540 * 8 6 3 31 31 H 1.00903 * 111.00015 * 56.04583 * 9 8 6 32 32 H 1.09004 * 109.46918 * 300.00513 * 10 9 8 33 33 H 1.09003 * 109.46611 * 59.99709 * 10 9 8 34 34 H 1.08997 * 109.47327 * 300.00511 * 11 10 9 35 35 H 1.09005 * 109.46648 * 60.00488 * 11 10 9 36 36 H 1.08997 * 109.47484 * 300.00507 * 12 11 10 37 37 H 1.08998 * 109.47250 * 60.00678 * 12 11 10 38 38 H 1.08997 * 109.47283 * 300.00432 * 13 12 11 39 39 H 1.08998 * 109.46757 * 60.00177 * 13 12 11 40 40 H 0.97003 * 119.99868 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9076 -1.2157 6 6 3.5501 1.6579 0.1187 7 1 3.8919 2.5288 0.6779 8 6 4.4351 0.4146 0.2277 9 7 5.8281 0.8232 0.4527 10 6 6.7088 -0.3472 0.5634 11 6 8.1478 0.1174 0.7961 12 6 9.0649 -1.1017 0.9119 13 6 10.5040 -0.6370 1.1453 14 6 11.4074 -1.8378 1.2588 15 1 10.9964 -2.8329 1.1726 16 6 12.7588 -1.6661 1.4716 17 7 13.2593 -0.4544 1.5760 18 14 13.8788 -3.1545 1.6115 19 1 13.8109 -3.9450 0.3563 20 1 15.2754 -2.7035 1.8382 21 1 13.4404 -3.9984 2.7522 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.7216 2.9426 -1.5342 28 1 3.0104 1.1856 -2.0153 29 1 4.0974 -0.1997 1.0624 30 1 4.3697 -0.1601 -0.6961 31 1 5.9050 1.4116 1.2688 32 1 6.3866 -0.9665 1.4005 33 1 6.6592 -0.9275 -0.3580 34 1 8.4697 0.7365 -0.0413 35 1 8.1976 0.6979 1.7174 36 1 8.7429 -1.7204 1.7495 37 1 9.0153 -1.6826 -0.0090 38 1 10.8262 -0.0181 0.3080 39 1 10.5533 -0.0564 2.0664 40 1 14.2101 -0.3336 1.7253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388064862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:16 Heat of formation + Delta-G solvation = -33.605747 kcal Electronic energy + Delta-G solvation = -14737.100765 eV Core-core repulsion = 12357.218877 eV Total energy + Delta-G solvation = -2379.881888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51141 -37.53841 -35.73362 -33.99658 -32.76727 -30.32969 -27.31033 -25.22784 -24.76408 -22.87948 -22.31839 -21.73216 -20.25106 -18.42424 -17.00116 -16.70312 -16.53107 -15.89858 -15.68419 -15.20090 -14.74895 -14.53487 -14.12635 -13.88866 -13.59782 -13.26106 -12.98169 -12.86123 -12.77991 -12.42246 -12.30417 -12.21856 -12.12644 -12.06441 -11.72982 -11.38875 -11.31515 -11.04543 -10.76810 -10.62887 -10.55006 -9.34093 -8.19799 -6.31561 1.39417 1.43078 1.51061 2.41024 2.79790 3.12676 3.25148 3.71610 3.94165 4.02148 4.12650 4.21767 4.31356 4.44668 4.48793 4.52925 4.60724 4.62963 4.73950 4.79697 4.83983 4.88903 4.94086 4.99995 5.17920 5.22408 5.23735 5.26475 5.29772 5.33852 5.35871 5.50554 5.54723 5.77737 5.86673 6.09400 6.25694 6.46099 6.85867 7.37689 8.91984 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.071440 B = 0.003119 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.845417 B = 8974.954525 C = 9239.447234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.141 4.141 4 H 0.111 0.889 5 C -0.172 4.172 6 C -0.155 4.155 7 H 0.104 0.896 8 C 0.094 3.906 9 N -0.697 5.697 10 C 0.071 3.929 11 C -0.106 4.106 12 C -0.097 4.097 13 C 0.023 3.977 14 C -0.546 4.546 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.266 1.266 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.344 0.656 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.050 0.950 38 H -0.011 1.011 39 H -0.010 1.010 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.232 2.100 -2.753 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.160 4.160 4 H 0.129 0.871 5 C -0.209 4.209 6 C -0.174 4.174 7 H 0.122 0.878 8 C -0.034 4.034 9 N -0.328 5.328 10 C -0.058 4.058 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.191 1.191 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.956 2.280 -3.402 24.303 hybrid contribution 0.825 -0.654 0.961 1.425 sum -23.131 1.626 -2.441 23.316 Atomic orbital electron populations 1.21731 0.94634 1.01982 1.02082 1.21123 0.96647 0.93874 1.01771 1.22549 0.92626 0.98571 1.02257 0.87072 1.23177 1.03862 1.02544 0.91331 1.22295 0.93437 0.99546 1.02080 0.87757 1.21450 0.86478 0.95198 1.00321 1.60449 1.06903 1.19513 1.45981 1.21842 0.91718 0.91902 1.00367 1.21464 0.93954 0.97734 1.01200 1.21401 0.94721 0.97058 1.00330 1.19021 0.92549 0.95326 0.94546 1.21724 0.93562 0.93959 1.49188 0.92159 1.26042 1.00161 0.99098 0.94814 1.70104 1.13585 1.23204 1.50624 0.85471 0.77247 0.78963 0.79189 1.19103 1.20759 1.19069 0.92367 0.92476 0.92292 0.92130 0.91947 0.88380 0.89020 0.94723 0.91447 0.83778 0.94884 0.91271 0.92706 0.92771 0.93061 0.93099 0.99306 0.99193 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.87 71.98 0.71 -0.98 16 2 C -0.10 -1.36 5.30 30.60 0.16 -1.19 16 3 C -0.14 -2.12 5.74 -10.79 -0.06 -2.18 16 4 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 5 C -0.17 -2.83 9.82 30.60 0.30 -2.53 16 6 C -0.16 -2.80 5.95 -10.79 -0.06 -2.87 16 7 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 8 C 0.09 1.96 5.05 86.30 0.44 2.40 16 9 N -0.70 -17.41 6.50 -513.89 -3.34 -20.75 16 10 C 0.07 1.99 5.68 86.30 0.49 2.48 16 11 C -0.11 -3.69 5.47 30.59 0.17 -3.52 16 12 C -0.10 -4.10 5.15 30.60 0.16 -3.94 16 13 C 0.02 1.24 4.97 29.85 0.15 1.39 16 14 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 17 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 18 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.89 7.87 -2.39 -0.02 0.87 16 26 H 0.06 0.91 7.60 -2.39 -0.02 0.90 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.54 7.92 -2.38 -0.02 1.53 16 29 H 0.03 0.70 7.60 -2.39 -0.02 0.68 16 30 H 0.07 1.44 7.87 -2.39 -0.02 1.43 16 31 H 0.34 8.01 8.72 -89.69 -0.78 7.22 16 32 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -64.31 325.77 2.29 -62.01 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.18 Total: 12.33 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.14 Total: -42.55 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -3.06 Total: -78.86 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.31 2.29 -62.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388064862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.408 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds