Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 C 1.52993 * 109.47427 * 239.99950 * 2 1 3 5 5 C 1.52993 * 109.47333 * 119.99420 * 2 1 3 6 6 N 1.46899 * 109.47137 * 60.00247 * 5 2 1 7 7 C 1.46903 * 111.00171 * 179.97438 * 6 5 2 8 8 H 1.09000 * 110.01502 * 326.39237 * 7 6 5 9 9 C 1.54261 * 110.07122 * 87.81231 * 7 6 5 10 10 C 1.54886 * 104.19957 * 142.91711 * 9 7 6 11 11 C 1.54894 * 102.74596 * 322.05519 * 10 9 7 12 12 H 1.08996 * 110.60228 * 279.20571 * 11 10 9 13 13 C 1.50706 * 110.48801 * 156.61708 * 11 10 9 14 14 H 1.07999 * 120.00196 * 245.22907 * 13 11 10 15 15 C 1.37879 * 119.99394 * 65.22775 * 13 11 10 16 16 N 1.31514 * 120.00338 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99426 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47555 * 90.00165 * 17 15 13 19 19 H 1.48503 * 109.46814 * 210.00053 * 17 15 13 20 20 H 1.48496 * 109.47318 * 329.99545 * 17 15 13 21 21 C 1.53875 * 110.03174 * 205.00042 * 7 6 5 22 22 H 1.08996 * 109.47231 * 300.00031 * 1 2 3 23 23 H 1.09001 * 109.46830 * 60.00371 * 1 2 3 24 24 H 1.08995 * 109.46639 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47215 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47089 * 299.99470 * 3 2 1 27 27 H 1.08999 * 109.47559 * 59.99564 * 3 2 1 28 28 H 1.09001 * 109.47369 * 299.99922 * 4 2 1 29 29 H 1.09001 * 109.47378 * 60.00014 * 4 2 1 30 30 H 1.09002 * 109.47466 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47588 * 300.00081 * 5 2 1 32 32 H 1.09010 * 109.47553 * 180.02562 * 5 2 1 33 33 H 1.00896 * 111.00262 * 303.95452 * 6 5 2 34 34 H 1.08999 * 110.48799 * 261.59195 * 9 7 6 35 35 H 1.09002 * 110.48926 * 24.10463 * 9 7 6 36 36 H 1.08996 * 110.76027 * 203.74566 * 10 9 7 37 37 H 1.08997 * 110.75792 * 80.36644 * 10 9 7 38 38 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 39 39 H 1.09004 * 110.03284 * 121.38528 * 21 7 6 40 40 H 1.09001 * 110.07432 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2492 6 7 1.5505 -2.1061 1.2494 7 6 2.0220 -2.8311 2.4368 8 1 3.0141 -2.4790 2.7193 9 6 1.0366 -2.6291 3.6064 10 6 1.0202 -3.9984 4.3301 11 6 1.0975 -5.0062 3.1564 12 1 0.1147 -5.1476 2.7070 13 6 1.6546 -6.3244 3.6289 14 1 2.6067 -6.6728 3.2569 15 6 0.9485 -7.0856 4.5362 16 7 -0.2107 -6.6611 4.9897 17 14 1.6393 -8.7192 5.1224 18 1 2.4726 -8.4990 6.3317 19 1 0.5215 -9.6395 5.4524 20 1 2.4729 -9.3179 4.0492 21 6 2.0607 -4.3425 2.1507 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9565 0.8899 28 1 1.6768 -1.7489 -1.2492 29 1 1.6768 -0.2074 -2.1392 30 1 3.1301 -0.7208 -1.2494 31 1 1.6767 -0.2072 2.1393 32 1 3.1301 -0.7207 1.2495 33 1 0.5440 -2.1339 1.1844 34 1 1.3950 -1.8478 4.2766 35 1 0.0437 -2.3822 3.2304 36 1 0.0943 -4.1282 4.8903 37 1 1.8862 -4.1001 4.9842 38 1 -0.7071 -7.1965 5.6282 39 1 3.0717 -4.7240 2.2945 40 1 1.7293 -4.5389 1.1310 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393462564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = -50.242731 kcal Electronic energy + Delta-G solvation = -16103.291288 eV Core-core repulsion = 13722.687966 eV Total energy + Delta-G solvation = -2380.603322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83914 -38.15683 -35.04970 -33.26043 -29.83770 -28.58398 -28.12127 -27.98034 -25.98854 -24.70595 -21.37737 -20.62523 -19.57081 -18.51016 -16.72711 -16.47835 -16.44809 -15.63249 -15.10896 -15.02128 -14.44058 -14.12476 -14.01217 -13.62350 -13.38156 -12.99557 -12.91132 -12.80488 -12.64044 -12.44171 -12.38531 -12.30324 -11.94677 -11.56840 -11.50079 -11.47132 -11.36828 -11.31152 -10.88612 -10.79599 -10.43540 -9.14903 -8.10316 -6.19878 1.41117 1.41597 1.52184 2.44516 3.19604 3.34490 3.89629 3.99208 4.00623 4.15108 4.18452 4.34409 4.61485 4.71658 4.74705 4.80709 4.85830 4.88875 4.94714 4.99096 5.01020 5.08751 5.13262 5.17234 5.20199 5.27515 5.30825 5.38985 5.44548 5.48322 5.55416 5.65229 5.67213 5.95030 6.01784 6.27844 6.43873 6.58173 6.91819 7.47419 8.98370 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.059983 B = 0.005205 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.686300 B = 5378.330484 C = 5510.897198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.129 4.129 5 C 0.069 3.931 6 N -0.681 5.681 7 C 0.097 3.903 8 H 0.074 0.926 9 C -0.140 4.140 10 C -0.092 4.092 11 C 0.039 3.961 12 H -0.005 1.005 13 C -0.532 4.532 14 H 0.051 0.949 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.097 4.097 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.339 0.661 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.259 0.741 39 H 0.046 0.954 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 14.614 -8.444 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.186 4.186 5 C -0.060 4.060 6 N -0.313 5.313 7 C -0.013 4.013 8 H 0.093 0.907 9 C -0.179 4.179 10 C -0.131 4.131 11 C 0.020 3.980 12 H 0.014 0.986 13 C -0.570 4.570 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.135 4.135 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.572 14.340 -8.755 17.176 hybrid contribution -0.525 -0.822 1.373 1.685 sum 3.046 13.518 -7.381 15.700 Atomic orbital electron populations 1.21894 0.94662 1.01585 1.02020 1.20566 0.95712 0.95508 0.94880 1.21819 1.01128 0.94353 1.02162 1.21704 1.00449 1.00354 0.96103 1.22063 0.99713 0.87769 0.96458 1.60712 1.16480 1.14182 1.39917 1.22057 0.97360 0.93912 0.87949 0.90736 1.23030 0.98996 0.97449 0.98469 1.22172 0.98802 0.93943 0.98165 1.19436 0.93448 0.92955 0.92127 0.98635 1.21624 1.05225 1.05233 1.24925 0.93033 1.25768 0.95149 1.01214 0.96600 1.70091 1.14529 1.39404 1.32066 0.85644 0.78009 0.79841 0.78708 1.20097 1.20954 1.19263 1.22129 0.99000 0.93708 0.98640 0.92894 0.91596 0.93128 0.92432 0.91623 0.92630 0.92955 0.92494 0.93266 0.95596 0.91538 0.84084 0.91836 0.92408 0.94638 0.94708 0.93196 0.93485 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.15 71.98 0.59 -2.21 16 2 C -0.07 -1.32 0.84 -52.18 -0.04 -1.36 16 3 C -0.14 -2.21 8.47 71.98 0.61 -1.60 16 4 C -0.13 -2.65 8.32 71.98 0.60 -2.06 16 5 C 0.07 1.66 4.48 86.30 0.39 2.05 16 6 N -0.68 -20.04 5.38 -487.83 -2.63 -22.67 16 7 C 0.10 3.39 3.23 45.64 0.15 3.54 16 8 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 9 C -0.14 -5.17 6.46 31.67 0.20 -4.97 16 10 C -0.09 -4.41 5.75 31.89 0.18 -4.22 16 11 C 0.04 2.01 2.72 -10.46 -0.03 1.98 16 12 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 13 C -0.53 -30.22 8.46 25.60 0.22 -30.00 16 14 H 0.05 2.88 7.54 -2.91 -0.02 2.86 16 15 C 0.01 0.63 5.35 84.66 0.45 1.08 16 16 N -0.92 -54.86 12.29 21.45 0.26 -54.60 16 17 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.10 -4.10 6.15 31.32 0.19 -3.91 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.09 6.57 -2.39 -0.02 1.08 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.27 7.60 -2.39 -0.02 1.25 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 1.61 8.07 -2.38 -0.02 1.60 16 33 H 0.34 10.03 6.15 -89.70 -0.55 9.47 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.06 7.56 -2.39 -0.02 2.05 16 36 H 0.03 1.86 7.55 -2.39 -0.02 1.84 16 37 H 0.03 1.70 8.05 -2.39 -0.02 1.68 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.05 2.03 7.66 -2.38 -0.02 2.01 16 40 H 0.05 2.26 7.92 -2.39 -0.02 2.24 16 Total: -1.00 -60.04 309.12 3.59 -56.45 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.42 Total: 15.90 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.51 Total: -41.68 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.36 Total: -77.27 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -60.04 3.59 -56.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393462564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.210 kcal (2) G-P(sol) polarization free energy of solvation -60.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds