Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47019 * 2 1 4 4 C 1.53004 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46770 * 55.00323 * 4 3 2 6 6 C 1.52997 * 109.47275 * 295.00434 * 4 3 2 7 7 C 1.52995 * 109.46896 * 175.00118 * 4 3 2 8 8 N 1.46904 * 109.47183 * 294.65549 * 7 4 3 9 9 C 1.48531 * 110.99882 * 281.96047 * 8 7 4 10 10 C 1.54940 * 103.22899 * 200.27835 * 9 8 7 11 11 C 1.54595 * 102.91840 * 37.41755 * 10 9 8 12 12 H 1.09000 * 110.39484 * 97.00261 * 11 10 9 13 13 C 1.50703 * 110.30902 * 219.12997 * 11 10 9 14 14 H 1.07993 * 120.00343 * 115.71273 * 13 11 10 15 15 C 1.37877 * 119.99397 * 295.71351 * 13 11 10 16 16 N 1.31514 * 120.00454 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99729 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46960 * 60.00048 * 17 15 13 19 19 H 1.48494 * 109.47006 * 300.00128 * 17 15 13 20 20 H 1.48505 * 109.47098 * 180.02562 * 17 15 13 21 21 C 1.47898 * 110.99975 * 164.56658 * 8 7 4 22 22 H 1.08999 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47532 * 300.00163 * 1 2 3 24 24 H 1.08999 * 109.47191 * 60.00232 * 1 2 3 25 25 H 1.09000 * 109.47303 * 240.00313 * 2 1 3 26 26 H 1.08999 * 109.47191 * 119.99768 * 2 1 3 27 27 H 1.09000 * 109.46828 * 60.00022 * 3 2 1 28 28 H 1.08999 * 109.46949 * 299.99916 * 3 2 1 29 29 H 1.08998 * 109.46994 * 185.70418 * 6 4 3 30 30 H 1.09002 * 109.47223 * 305.70128 * 6 4 3 31 31 H 1.08998 * 109.47453 * 65.70185 * 6 4 3 32 32 H 1.09003 * 109.46765 * 174.65655 * 7 4 3 33 33 H 1.08998 * 109.47475 * 54.65473 * 7 4 3 34 34 H 1.09004 * 110.67317 * 318.71618 * 9 8 7 35 35 H 1.09003 * 110.66927 * 81.68122 * 9 8 7 36 36 H 1.08995 * 110.72361 * 279.06195 * 10 9 8 37 37 H 1.08996 * 110.72376 * 155.77280 * 10 9 8 38 38 H 0.97003 * 119.99568 * 0.02562 * 16 15 13 39 39 H 1.08998 * 109.91752 * 26.49130 * 21 8 7 40 40 H 1.09002 * 110.08287 * 265.28655 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0799 2.8796 -0.1250 8 7 3.6989 3.4215 -1.4363 9 6 4.5956 2.9103 -2.5044 10 6 4.4093 3.9403 -3.6468 11 6 4.2800 5.2802 -2.8864 12 1 5.2402 5.7952 -2.8584 13 6 3.2381 6.1528 -3.5377 14 1 2.3400 6.4155 -2.9985 15 6 3.4316 6.6156 -4.8219 16 7 4.5255 6.2961 -5.4784 17 14 2.1405 7.6979 -5.6290 18 1 1.9581 8.9336 -4.8259 19 1 0.8533 6.9613 -5.7032 20 1 2.5836 8.0586 -6.9998 21 6 3.8391 4.8936 -1.4624 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 5.1646 0.9250 1.3533 30 1 3.6348 1.3603 2.1523 31 1 3.8020 -0.2201 1.3506 32 1 5.1657 2.8895 -0.0294 33 1 3.6402 3.4914 0.6626 34 1 5.6309 2.8966 -2.1638 35 1 4.2842 1.9161 -2.8249 36 1 3.5020 3.7289 -4.2126 37 1 5.2802 3.9512 -4.3021 38 1 5.1961 5.7344 -5.0591 39 1 4.5943 5.2075 -0.7419 40 1 2.8844 5.3647 -1.2286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397628526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -32.878032 kcal Electronic energy + Delta-G solvation = -16133.067550 eV Core-core repulsion = 13753.217218 eV Total energy + Delta-G solvation = -2379.850332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.56566 -36.43410 -33.51358 -32.12885 -29.61394 -28.23787 -26.46873 -25.14954 -23.67677 -21.55004 -20.56381 -19.75106 -19.26402 -16.84704 -15.53697 -15.17793 -14.79828 -14.33520 -13.71742 -13.56030 -13.23336 -13.04001 -12.64535 -12.43831 -12.11864 -11.81726 -11.61995 -11.48771 -11.18646 -10.96164 -10.85272 -10.66283 -10.42515 -10.31479 -10.27605 -10.10552 -10.03820 -9.74322 -9.51541 -8.41116 -8.30681 -7.73449 -6.28279 -3.99076 3.47410 3.49373 3.67698 4.56585 4.59148 4.83439 5.04600 5.14014 5.29634 5.40794 5.42248 5.50841 5.62550 5.70458 5.81044 5.82086 5.87346 5.93740 5.96626 5.99835 6.09047 6.14836 6.18184 6.23873 6.25303 6.34952 6.44668 6.59054 6.71129 6.75504 6.90909 7.05301 7.31325 7.36448 7.76684 7.84104 8.29802 8.49374 8.94435 9.71779 11.09905 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033093 B = 0.006104 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.898274 B = 4585.729973 C = 5035.386460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.084 4.084 5 H 0.067 0.933 6 C -0.147 4.147 7 C 0.050 3.950 8 N -0.512 5.512 9 C 0.034 3.966 10 C -0.110 4.110 11 C 0.025 3.975 12 H 0.019 0.981 13 C -0.585 4.585 14 H 0.050 0.950 15 C 0.018 3.982 16 N -0.915 5.915 17 Si 1.067 2.933 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.284 1.284 21 C 0.053 3.947 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.270 0.730 39 H 0.017 0.983 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 -10.721 10.886 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.103 4.103 5 H 0.085 0.915 6 C -0.204 4.204 7 C -0.078 4.078 8 N -0.236 5.236 9 C -0.093 4.093 10 C -0.148 4.148 11 C 0.006 3.994 12 H 0.037 0.963 13 C -0.624 4.624 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.551 5.551 17 Si 0.895 3.105 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.075 4.075 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.509 -10.039 9.411 14.201 hybrid contribution 1.286 -0.623 1.676 2.202 sum -2.223 -10.663 11.087 15.542 Atomic orbital electron populations 1.21766 0.96297 1.00960 1.01883 1.21583 0.95518 0.97763 1.01346 1.21564 0.94343 0.95743 1.02837 1.21084 0.96174 0.95715 0.97341 0.91457 1.21862 1.00486 1.00514 0.97568 1.22314 0.97239 0.95532 0.92757 1.64662 1.49544 1.06716 1.02667 1.23286 0.93330 0.99000 0.93715 1.22682 1.00736 0.95540 0.95869 1.19639 0.96736 0.92988 0.90068 0.96332 1.21990 1.05483 1.33045 1.01864 0.93199 1.25774 1.00117 0.98055 0.94672 1.70797 1.08565 1.35781 1.40004 0.83572 0.74881 0.75846 0.76152 1.21564 1.21476 1.20904 1.22933 0.99591 0.86381 0.98575 0.93338 0.93043 0.92555 0.92398 0.92557 0.92828 0.90165 0.93213 0.92909 0.92661 0.95412 0.91693 0.95378 0.91724 0.91398 0.93093 0.91846 0.96424 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.15 0.37 -1.23 16 2 C -0.12 -1.40 5.69 -26.73 -0.15 -1.56 16 3 C -0.11 -1.42 4.63 -26.73 -0.12 -1.54 16 4 C -0.08 -1.12 2.47 -90.62 -0.22 -1.35 16 5 H 0.07 0.95 7.45 -51.93 -0.39 0.56 16 6 C -0.15 -1.60 8.80 37.16 0.33 -1.27 16 7 C 0.05 0.79 4.13 -3.82 -0.02 0.78 16 8 N -0.51 -9.87 4.60 -230.45 -1.06 -10.93 16 9 C 0.03 0.67 6.09 -1.90 -0.01 0.66 16 10 C -0.11 -2.57 5.57 -24.87 -0.14 -2.71 16 11 C 0.02 0.63 2.54 -90.41 -0.23 0.40 16 12 H 0.02 0.50 7.95 -51.93 -0.41 0.09 16 13 C -0.59 -16.54 8.38 -34.44 -0.29 -16.83 16 14 H 0.05 1.41 7.34 -52.49 -0.39 1.03 16 15 C 0.02 0.51 5.34 -17.82 -0.10 0.41 16 16 N -0.91 -27.57 13.45 55.43 0.75 -26.82 16 17 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.05 1.15 6.27 -2.75 -0.02 1.13 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.58 6.69 -51.93 -0.35 0.23 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.27 7.63 -51.93 -0.40 0.87 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.54 6.85 -51.93 -0.36 0.19 16 32 H 0.03 0.44 7.71 -51.93 -0.40 0.04 16 33 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 34 H 0.03 0.52 7.74 -51.93 -0.40 0.12 16 35 H 0.06 1.16 7.81 -51.93 -0.41 0.76 16 36 H 0.07 1.73 7.86 -51.93 -0.41 1.32 16 37 H 0.05 1.21 7.10 -51.93 -0.37 0.84 16 38 H 0.27 8.04 5.65 -40.82 -0.23 7.81 16 39 H 0.02 0.36 7.77 -51.93 -0.40 -0.04 16 40 H 0.07 1.63 7.39 -51.93 -0.38 1.25 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -29.13 307.03 -8.83 -37.96 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.46 Total: -2.05 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -0.60 Total: -23.11 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.31 Total: -37.75 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.13 -8.83 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397628526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.085 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds