Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47019 * 2 1 4 4 C 1.53004 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46770 * 55.00323 * 4 3 2 6 6 C 1.52997 * 109.47275 * 295.00434 * 4 3 2 7 7 C 1.52995 * 109.46896 * 175.00118 * 4 3 2 8 8 N 1.46904 * 109.47183 * 294.65549 * 7 4 3 9 9 C 1.48531 * 110.99882 * 281.96047 * 8 7 4 10 10 C 1.54940 * 103.22899 * 200.27835 * 9 8 7 11 11 C 1.54595 * 102.91840 * 37.41755 * 10 9 8 12 12 H 1.09000 * 110.39484 * 97.00261 * 11 10 9 13 13 C 1.50703 * 110.30902 * 219.12997 * 11 10 9 14 14 H 1.07993 * 120.00343 * 115.71273 * 13 11 10 15 15 C 1.37877 * 119.99397 * 295.71351 * 13 11 10 16 16 N 1.31514 * 120.00454 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99729 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46960 * 60.00048 * 17 15 13 19 19 H 1.48494 * 109.47006 * 300.00128 * 17 15 13 20 20 H 1.48505 * 109.47098 * 180.02562 * 17 15 13 21 21 C 1.47898 * 110.99975 * 164.56658 * 8 7 4 22 22 H 1.08999 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47532 * 300.00163 * 1 2 3 24 24 H 1.08999 * 109.47191 * 60.00232 * 1 2 3 25 25 H 1.09000 * 109.47303 * 240.00313 * 2 1 3 26 26 H 1.08999 * 109.47191 * 119.99768 * 2 1 3 27 27 H 1.09000 * 109.46828 * 60.00022 * 3 2 1 28 28 H 1.08999 * 109.46949 * 299.99916 * 3 2 1 29 29 H 1.08998 * 109.46994 * 185.70418 * 6 4 3 30 30 H 1.09002 * 109.47223 * 305.70128 * 6 4 3 31 31 H 1.08998 * 109.47453 * 65.70185 * 6 4 3 32 32 H 1.09003 * 109.46765 * 174.65655 * 7 4 3 33 33 H 1.08998 * 109.47475 * 54.65473 * 7 4 3 34 34 H 1.09004 * 110.67317 * 318.71618 * 9 8 7 35 35 H 1.09003 * 110.66927 * 81.68122 * 9 8 7 36 36 H 1.08995 * 110.72361 * 279.06195 * 10 9 8 37 37 H 1.08996 * 110.72376 * 155.77280 * 10 9 8 38 38 H 0.97003 * 119.99568 * 0.02562 * 16 15 13 39 39 H 1.08998 * 109.91752 * 26.49130 * 21 8 7 40 40 H 1.09002 * 110.08287 * 265.28655 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0795 0.8331 1.3082 7 6 4.0799 2.8796 -0.1250 8 7 3.6989 3.4215 -1.4363 9 6 4.5956 2.9103 -2.5044 10 6 4.4093 3.9403 -3.6468 11 6 4.2800 5.2802 -2.8864 12 1 5.2402 5.7952 -2.8584 13 6 3.2381 6.1528 -3.5377 14 1 2.3400 6.4155 -2.9985 15 6 3.4316 6.6156 -4.8219 16 7 4.5255 6.2961 -5.4784 17 14 2.1405 7.6979 -5.6290 18 1 1.9581 8.9336 -4.8259 19 1 0.8533 6.9613 -5.7032 20 1 2.5836 8.0586 -6.9998 21 6 3.8391 4.8936 -1.4624 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 5.1646 0.9250 1.3533 30 1 3.6348 1.3603 2.1523 31 1 3.8020 -0.2201 1.3506 32 1 5.1657 2.8895 -0.0294 33 1 3.6402 3.4914 0.6626 34 1 5.6309 2.8966 -2.1638 35 1 4.2842 1.9161 -2.8249 36 1 3.5020 3.7289 -4.2126 37 1 5.2802 3.9512 -4.3021 38 1 5.1961 5.7344 -5.0591 39 1 4.5943 5.2075 -0.7419 40 1 2.8844 5.3647 -1.2286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397628526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -48.976353 kcal Electronic energy + Delta-G solvation = -16133.765626 eV Core-core repulsion = 13753.217218 eV Total energy + Delta-G solvation = -2380.548408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13149 -37.69898 -35.30722 -33.42163 -31.23076 -30.06729 -27.39839 -26.70812 -25.58107 -22.66174 -21.99110 -21.58008 -20.55864 -18.97269 -17.02226 -16.48175 -16.20544 -15.65572 -15.49400 -14.93849 -14.57204 -14.40133 -14.03924 -13.90200 -13.40332 -13.21165 -13.02422 -12.75325 -12.63747 -12.54600 -12.26534 -12.13717 -11.95983 -11.81686 -11.74192 -11.56055 -11.34088 -11.27769 -11.10872 -10.54341 -10.46483 -9.28700 -8.57470 -6.29127 1.53561 1.61475 1.80580 2.58854 3.08186 3.22685 3.76224 3.95834 4.02885 4.14110 4.18301 4.30776 4.35508 4.42375 4.52844 4.55826 4.61803 4.72673 4.73236 4.82133 4.87957 4.92592 5.00228 5.06136 5.11813 5.15669 5.18082 5.27991 5.32669 5.36429 5.40739 5.47528 5.58474 5.66543 6.03542 6.12153 6.21730 6.28160 6.68372 7.49644 8.81406 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033093 B = 0.006104 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.898274 B = 4585.729973 C = 5035.386460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.079 4.079 5 H 0.061 0.939 6 C -0.140 4.140 7 C 0.049 3.951 8 N -0.518 5.518 9 C 0.048 3.952 10 C -0.102 4.102 11 C 0.013 3.987 12 H -0.006 1.006 13 C -0.600 4.600 14 H 0.044 0.956 15 C -0.031 4.031 16 N -0.938 5.938 17 Si 1.112 2.888 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.284 1.284 21 C 0.063 3.937 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.260 0.740 39 H 0.030 0.970 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -11.912 12.328 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.098 4.098 5 H 0.080 0.920 6 C -0.198 4.198 7 C -0.079 4.079 8 N -0.242 5.242 9 C -0.080 4.080 10 C -0.141 4.141 11 C -0.006 4.006 12 H 0.012 0.988 13 C -0.638 4.638 14 H 0.062 0.938 15 C -0.229 4.229 16 N -0.576 5.576 17 Si 0.935 3.065 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.210 1.210 21 C -0.065 4.065 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.064 -11.247 10.883 16.169 hybrid contribution 1.478 -0.259 1.264 1.963 sum -2.585 -11.507 12.147 16.931 Atomic orbital electron populations 1.21767 0.95880 1.01800 1.01482 1.21549 0.95898 0.96353 1.01975 1.21503 0.94373 0.96869 1.01431 1.21055 0.96097 0.93953 0.98715 0.92025 1.21809 1.00760 1.01228 0.96013 1.22444 0.97744 0.97019 0.90660 1.64650 1.49959 1.04967 1.04590 1.23174 0.94275 0.98443 0.92086 1.22448 0.98897 0.96053 0.96711 1.19663 0.94886 0.93396 0.92630 0.98805 1.22339 1.05834 1.33432 1.02208 0.93800 1.27175 1.01185 0.98922 0.95630 1.70907 1.09384 1.36893 1.40430 0.82986 0.73081 0.75084 0.75386 1.19672 1.19927 1.20965 1.22685 0.99110 0.88299 0.96406 0.91893 0.92587 0.93857 0.92749 0.90852 0.92533 0.93260 0.92722 0.92269 0.91173 0.94831 0.91223 0.94020 0.89790 0.94062 0.94140 0.92924 0.95160 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.12 -2.43 5.69 30.59 0.17 -2.26 16 3 C -0.10 -2.57 4.63 30.60 0.14 -2.43 16 4 C -0.08 -1.92 2.47 -10.79 -0.03 -1.95 16 5 H 0.06 1.58 7.45 -2.39 -0.02 1.56 16 6 C -0.14 -2.59 8.80 71.98 0.63 -1.95 16 7 C 0.05 1.46 4.13 86.30 0.36 1.81 16 8 N -0.52 -19.48 4.60 -883.00 -4.06 -23.54 16 9 C 0.05 1.82 6.09 86.65 0.53 2.34 16 10 C -0.10 -4.90 5.57 31.80 0.18 -4.72 16 11 C 0.01 0.69 2.54 -10.66 -0.03 0.66 16 12 H -0.01 -0.34 7.95 -2.39 -0.02 -0.36 16 13 C -0.60 -34.59 8.38 25.60 0.21 -34.38 16 14 H 0.04 2.52 7.34 -2.91 -0.02 2.50 16 15 C -0.03 -1.80 5.34 84.65 0.45 -1.35 16 16 N -0.94 -57.79 13.45 21.45 0.29 -57.50 16 17 Si 1.11 51.24 29.90 68.60 2.05 53.29 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 C 0.06 2.74 6.27 86.45 0.54 3.28 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.25 6.69 -2.39 -0.02 1.23 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.52 7.63 -2.39 -0.02 1.51 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.11 6.85 -2.39 -0.02 1.09 16 32 H 0.03 0.97 7.71 -2.39 -0.02 0.95 16 33 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 34 H 0.04 1.48 7.74 -2.38 -0.02 1.46 16 35 H 0.08 2.88 7.81 -2.39 -0.02 2.86 16 36 H 0.04 2.16 7.86 -2.39 -0.02 2.14 16 37 H 0.04 1.97 7.10 -2.39 -0.02 1.96 16 38 H 0.26 16.05 5.65 -92.71 -0.52 15.52 16 39 H 0.03 1.22 7.77 -2.39 -0.02 1.20 16 40 H 0.06 2.74 7.39 -2.39 -0.02 2.72 16 Total: -1.00 -63.10 307.03 3.37 -59.74 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.21 Total: 11.17 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 3.88 Total: -43.15 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.77 Total: -81.05 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -63.10 3.37 -59.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397628526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.762 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds