Wall clock time and date at job start Mon Mar 30 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47089 * 54.99208 * 3 2 1 5 5 C 1.53004 * 109.46570 * 294.99808 * 3 2 1 6 6 C 1.52993 * 109.47148 * 174.99847 * 3 2 1 7 7 H 1.08996 * 109.47239 * 59.99595 * 6 3 2 8 8 C 1.53002 * 109.46922 * 299.99800 * 6 3 2 9 9 N 1.46902 * 109.46977 * 180.02562 * 6 3 2 10 10 C 1.47839 * 111.00186 * 62.47110 * 9 6 3 11 11 C 1.54908 * 104.79473 * 146.36096 * 10 9 6 12 12 C 1.55138 * 101.65368 * 322.93251 * 11 10 9 13 13 H 1.08998 * 110.70713 * 277.26642 * 12 11 10 14 14 C 1.50709 * 110.85317 * 154.10398 * 12 11 10 15 15 H 1.08002 * 119.99729 * 243.90387 * 14 12 11 16 16 C 1.37872 * 119.99939 * 63.91058 * 14 12 11 17 17 N 1.31514 * 120.00361 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99877 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47166 * 120.00095 * 18 16 14 21 21 H 1.48505 * 109.47131 * 239.99605 * 18 16 14 22 22 C 1.47443 * 110.99779 * 183.31593 * 9 6 3 23 23 H 1.09004 * 109.46627 * 60.00167 * 1 2 3 24 24 H 1.08990 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46847 * 300.00676 * 1 2 3 26 26 H 1.08998 * 109.47518 * 239.99635 * 2 1 3 27 27 H 1.09005 * 109.46693 * 119.99285 * 2 1 3 28 28 H 1.09002 * 109.46925 * 299.99500 * 5 3 2 29 29 H 1.08990 * 109.47345 * 60.00063 * 5 3 2 30 30 H 1.09002 * 109.46448 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47296 * 67.61984 * 8 6 3 32 32 H 1.08997 * 109.46994 * 187.62091 * 8 6 3 33 33 H 1.08999 * 109.47038 * 307.61772 * 8 6 3 34 34 H 1.08994 * 110.37440 * 265.19079 * 10 9 6 35 35 H 1.08998 * 110.37375 * 27.42683 * 10 9 6 36 36 H 1.09004 * 110.99541 * 204.83815 * 11 10 9 37 37 H 1.09009 * 110.98742 * 81.02076 * 11 10 9 38 38 H 0.97003 * 120.00269 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.89065 * 117.33009 * 22 9 6 40 40 H 1.08999 * 109.89355 * 356.14813 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4444 0.1258 7 1 3.9995 0.9053 -0.7160 8 6 3.9695 0.7604 1.4332 9 7 4.0545 2.8294 0.1264 10 6 3.5313 3.5758 1.2903 11 6 4.6654 4.5598 1.6715 12 6 5.9290 3.7007 1.4032 13 1 6.1409 3.0512 2.2524 14 6 7.1168 4.5754 1.0943 15 1 7.5852 4.5265 0.1224 16 6 7.6055 5.4379 2.0526 17 7 7.0348 5.4977 3.2360 18 14 9.0781 6.5215 1.6700 19 1 9.5330 6.2659 0.2797 20 1 8.6924 7.9486 1.8106 21 1 10.1801 6.2112 2.6159 22 6 5.5278 2.8689 0.1669 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8935 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0701 1.5874 -2.1492 29 1 0.5491 2.1252 -1.3970 30 1 1.9991 3.1540 -1.3076 31 1 3.7267 -0.3008 1.3784 32 1 5.0416 0.8801 1.5892 33 1 3.4286 1.2145 2.2634 34 1 2.6299 4.1236 1.0159 35 1 3.3242 2.8949 2.1159 36 1 4.6009 4.8418 2.7224 37 1 4.6492 5.4413 1.0305 38 1 7.3789 6.1042 3.9103 39 1 5.9112 3.3407 -0.7379 40 1 5.9237 1.8573 0.2562 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397641586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:24 Heat of formation + Delta-G solvation = -19.646777 kcal Electronic energy + Delta-G solvation = -16523.377908 eV Core-core repulsion = 14144.101326 eV Total energy + Delta-G solvation = -2379.276582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.11035 -36.06146 -33.06732 -31.23084 -29.14701 -28.28757 -27.94855 -24.50132 -24.13518 -22.13544 -20.50295 -19.34043 -18.52655 -16.43210 -15.56560 -15.04066 -14.52914 -14.32757 -13.86236 -13.55280 -13.14346 -12.84076 -12.49527 -12.18438 -11.73587 -11.67289 -11.57451 -11.23833 -11.14235 -11.02559 -10.95521 -10.68558 -10.59202 -10.36740 -10.27928 -10.10090 -9.86331 -9.54038 -9.20009 -8.79083 -8.36458 -7.43540 -5.99890 -4.02174 3.31030 3.39120 3.43423 4.45325 4.64963 4.95622 5.06554 5.23268 5.33427 5.40353 5.58918 5.62621 5.71564 5.77947 5.86221 5.96271 6.02346 6.06933 6.10470 6.15854 6.18571 6.26161 6.33766 6.36842 6.41799 6.56788 6.65302 6.75054 6.78525 6.94916 7.23037 7.27170 7.66130 7.70194 7.93791 7.97053 8.05859 8.45873 8.99950 9.61828 11.10062 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.060842 B = 0.005874 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.101291 B = 4765.307966 C = 4790.739596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.081 4.081 4 H 0.067 0.933 5 C -0.137 4.137 6 C 0.081 3.919 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.523 5.523 10 C 0.032 3.968 11 C -0.103 4.103 12 C 0.036 3.964 13 H 0.027 0.973 14 C -0.509 4.509 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.046 3.954 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.258 0.742 39 H 0.066 0.934 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 -8.575 -4.758 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.100 4.100 4 H 0.085 0.915 5 C -0.194 4.194 6 C -0.028 4.028 7 H 0.090 0.910 8 C -0.246 4.246 9 N -0.247 5.247 10 C -0.095 4.095 11 C -0.142 4.142 12 C 0.017 3.983 13 H 0.045 0.955 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.397 -8.252 -5.066 14.208 hybrid contribution 1.118 0.213 0.716 1.345 sum -9.280 -8.039 -4.349 13.025 Atomic orbital electron populations 1.21805 0.96254 1.00980 1.01819 1.21637 0.95517 0.97005 1.01787 1.21162 0.94723 0.95233 0.98899 0.91457 1.21726 0.99384 1.01919 0.96355 1.21807 0.94404 0.90217 0.96383 0.91043 1.22549 1.02427 1.00128 0.99501 1.63787 1.08979 1.10671 1.41238 1.23177 0.98744 0.96408 0.91178 1.22599 0.93733 0.97085 1.00800 1.19790 0.93470 0.93250 0.91780 0.95502 1.21145 1.13162 1.21429 0.99034 0.92484 1.24972 0.96863 0.97066 0.95030 1.69974 1.40849 1.37812 1.04322 0.86569 0.82798 0.80451 0.78386 1.19754 1.21068 1.21142 1.22985 0.85533 0.98505 1.01096 0.92560 0.93297 0.92967 0.92290 0.91970 0.93466 0.93795 0.91300 0.92909 0.91926 0.92352 0.92503 0.94312 0.91391 0.92720 0.93183 0.91570 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.14 16 2 C -0.12 -1.37 5.19 -26.72 -0.14 -1.51 16 3 C -0.08 -1.09 1.77 -90.62 -0.16 -1.25 16 4 H 0.07 0.96 7.23 -51.93 -0.38 0.59 16 5 C -0.14 -1.79 8.79 37.16 0.33 -1.46 16 6 C 0.08 1.27 1.78 -67.71 -0.12 1.15 16 7 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 8 C -0.19 -2.90 7.94 37.16 0.30 -2.60 16 9 N -0.52 -9.86 4.42 -223.31 -0.99 -10.84 16 10 C 0.03 0.63 5.23 -2.30 -0.01 0.62 16 11 C -0.10 -2.45 5.85 -24.59 -0.14 -2.59 16 12 C 0.04 0.91 2.81 -89.95 -0.25 0.66 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.51 -14.08 8.49 -34.44 -0.29 -14.37 16 15 H 0.06 1.57 7.55 -52.49 -0.40 1.17 16 16 C 0.06 1.73 5.35 -17.82 -0.10 1.64 16 17 N -0.89 -25.73 12.30 55.43 0.68 -25.05 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.05 0.98 5.82 -2.84 -0.02 0.97 16 23 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.70 6.35 -51.93 -0.33 0.37 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.50 6.56 -51.93 -0.34 0.16 16 30 H 0.07 1.03 7.60 -51.93 -0.39 0.63 16 31 H 0.05 0.69 6.75 -51.93 -0.35 0.34 16 32 H 0.06 1.09 6.36 -51.93 -0.33 0.76 16 33 H 0.06 0.93 6.24 -51.93 -0.32 0.60 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.74 5.46 -51.93 -0.28 0.45 16 36 H 0.07 1.72 7.65 -51.93 -0.40 1.32 16 37 H 0.05 1.36 8.05 -51.92 -0.42 0.94 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.07 1.48 7.65 -51.93 -0.40 1.08 16 40 H 0.03 0.70 6.28 -51.93 -0.33 0.37 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -27.74 297.85 -8.19 -35.92 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.10 Total: -1.05 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.25 Total: -19.89 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.30 Total: -35.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.74 -8.19 -35.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.277 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds