Wall clock time and date at job start Mon Mar 30 2020 03:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47089 * 54.99208 * 3 2 1 5 5 C 1.53004 * 109.46570 * 294.99808 * 3 2 1 6 6 C 1.52993 * 109.47148 * 174.99847 * 3 2 1 7 7 H 1.08996 * 109.47239 * 59.99595 * 6 3 2 8 8 C 1.53002 * 109.46922 * 299.99800 * 6 3 2 9 9 N 1.46902 * 109.46977 * 180.02562 * 6 3 2 10 10 C 1.47839 * 111.00186 * 62.47110 * 9 6 3 11 11 C 1.54908 * 104.79473 * 146.36096 * 10 9 6 12 12 C 1.55138 * 101.65368 * 322.93251 * 11 10 9 13 13 H 1.08998 * 110.70713 * 277.26642 * 12 11 10 14 14 C 1.50709 * 110.85317 * 154.10398 * 12 11 10 15 15 H 1.08002 * 119.99729 * 243.90387 * 14 12 11 16 16 C 1.37872 * 119.99939 * 63.91058 * 14 12 11 17 17 N 1.31514 * 120.00361 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99877 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47166 * 120.00095 * 18 16 14 21 21 H 1.48505 * 109.47131 * 239.99605 * 18 16 14 22 22 C 1.47443 * 110.99779 * 183.31593 * 9 6 3 23 23 H 1.09004 * 109.46627 * 60.00167 * 1 2 3 24 24 H 1.08990 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46847 * 300.00676 * 1 2 3 26 26 H 1.08998 * 109.47518 * 239.99635 * 2 1 3 27 27 H 1.09005 * 109.46693 * 119.99285 * 2 1 3 28 28 H 1.09002 * 109.46925 * 299.99500 * 5 3 2 29 29 H 1.08990 * 109.47345 * 60.00063 * 5 3 2 30 30 H 1.09002 * 109.46448 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47296 * 67.61984 * 8 6 3 32 32 H 1.08997 * 109.46994 * 187.62091 * 8 6 3 33 33 H 1.08999 * 109.47038 * 307.61772 * 8 6 3 34 34 H 1.08994 * 110.37440 * 265.19079 * 10 9 6 35 35 H 1.08998 * 110.37375 * 27.42683 * 10 9 6 36 36 H 1.09004 * 110.99541 * 204.83815 * 11 10 9 37 37 H 1.09009 * 110.98742 * 81.02076 * 11 10 9 38 38 H 0.97003 * 120.00269 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.89065 * 117.33009 * 22 9 6 40 40 H 1.08999 * 109.89355 * 356.14813 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4444 0.1258 7 1 3.9995 0.9053 -0.7160 8 6 3.9695 0.7604 1.4332 9 7 4.0545 2.8294 0.1264 10 6 3.5313 3.5758 1.2903 11 6 4.6654 4.5598 1.6715 12 6 5.9290 3.7007 1.4032 13 1 6.1409 3.0512 2.2524 14 6 7.1168 4.5754 1.0943 15 1 7.5852 4.5265 0.1224 16 6 7.6055 5.4379 2.0526 17 7 7.0348 5.4977 3.2360 18 14 9.0781 6.5215 1.6700 19 1 9.5330 6.2659 0.2797 20 1 8.6924 7.9486 1.8106 21 1 10.1801 6.2112 2.6159 22 6 5.5278 2.8689 0.1669 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8935 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0701 1.5874 -2.1492 29 1 0.5491 2.1252 -1.3970 30 1 1.9991 3.1540 -1.3076 31 1 3.7267 -0.3008 1.3784 32 1 5.0416 0.8801 1.5892 33 1 3.4286 1.2145 2.2634 34 1 2.6299 4.1236 1.0159 35 1 3.3242 2.8949 2.1159 36 1 4.6009 4.8418 2.7224 37 1 4.6492 5.4413 1.0305 38 1 7.3789 6.1042 3.9103 39 1 5.9112 3.3407 -0.7379 40 1 5.9237 1.8573 0.2562 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397641586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:23 Heat of formation + Delta-G solvation = -34.961996 kcal Electronic energy + Delta-G solvation = -16524.042026 eV Core-core repulsion = 14144.101326 eV Total energy + Delta-G solvation = -2379.940700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59413 -37.41457 -34.90898 -32.80032 -30.32300 -29.94655 -29.53422 -26.40125 -25.23343 -23.53341 -21.95927 -21.08318 -19.87575 -18.52545 -17.10131 -16.53130 -16.17914 -15.57213 -15.20789 -14.99151 -14.64605 -14.03871 -13.92027 -13.81293 -13.17116 -13.00522 -12.93922 -12.77900 -12.63834 -12.58248 -12.43274 -12.30666 -12.14399 -11.90638 -11.48540 -11.37344 -11.31263 -11.18308 -10.96459 -10.85348 -10.49198 -9.00430 -8.14355 -6.23995 1.39449 1.41296 1.53068 2.42527 3.16906 3.22115 3.80016 4.07138 4.14101 4.24639 4.35847 4.40713 4.44335 4.55832 4.61393 4.64663 4.74133 4.80241 4.87334 4.92297 4.96935 5.04581 5.09554 5.18611 5.21636 5.27912 5.31208 5.33152 5.40734 5.47043 5.59153 5.62615 5.69029 5.75980 5.89799 6.23640 6.35571 6.45702 6.85259 7.43651 8.95168 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.060842 B = 0.005874 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.101291 B = 4765.307966 C = 4790.739596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.076 4.076 4 H 0.059 0.941 5 C -0.133 4.133 6 C 0.079 3.921 7 H 0.077 0.923 8 C -0.182 4.182 9 N -0.522 5.522 10 C 0.048 3.952 11 C -0.098 4.098 12 C 0.031 3.969 13 H -0.003 1.003 14 C -0.530 4.530 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.059 3.941 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 -9.502 -5.736 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.095 4.095 4 H 0.078 0.922 5 C -0.190 4.190 6 C -0.030 4.030 7 H 0.096 0.904 8 C -0.240 4.240 9 N -0.246 5.246 10 C -0.080 4.080 11 C -0.136 4.136 12 C 0.011 3.989 13 H 0.015 0.985 14 C -0.569 4.569 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.560 5.560 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.069 4.069 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.322 -9.192 -6.053 15.790 hybrid contribution 1.391 0.467 1.031 1.793 sum -9.931 -8.724 -5.023 14.141 Atomic orbital electron populations 1.21787 0.95038 1.01931 1.01909 1.21600 0.96539 0.95163 1.02219 1.21124 0.92598 0.96947 0.98817 0.92215 1.21686 1.00561 1.00530 0.96247 1.21967 0.96209 0.88124 0.96699 0.90440 1.22483 1.00614 1.01900 0.99017 1.63781 1.07109 1.13017 1.40654 1.23019 0.97585 0.95634 0.91729 1.22392 0.95155 0.97215 0.98875 1.19735 0.93557 0.93250 0.92315 0.98534 1.21498 1.14227 1.22097 0.99034 0.92798 1.25755 0.99594 0.98366 0.94844 1.70093 1.42210 1.38517 1.05138 0.85544 0.79388 0.78537 0.78434 1.19051 1.20625 1.20602 1.22724 0.87394 0.98109 0.98657 0.92217 0.91974 0.93153 0.91579 0.91823 0.93030 0.92011 0.93426 0.90171 0.94362 0.92957 0.90765 0.93572 0.93806 0.94494 0.93082 0.92567 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 71.98 0.70 -1.77 16 2 C -0.12 -2.27 5.19 30.60 0.16 -2.11 16 3 C -0.08 -1.85 1.77 -10.79 -0.02 -1.87 16 4 H 0.06 1.57 7.23 -2.39 -0.02 1.55 16 5 C -0.13 -3.16 8.79 71.98 0.63 -2.52 16 6 C 0.08 2.33 1.78 44.91 0.08 2.41 16 7 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 8 C -0.18 -5.36 7.94 71.98 0.57 -4.79 16 9 N -0.52 -19.29 4.42 -860.41 -3.80 -23.09 16 10 C 0.05 1.84 5.23 86.77 0.45 2.30 16 11 C -0.10 -4.74 5.85 31.98 0.19 -4.56 16 12 C 0.03 1.58 2.81 -10.36 -0.03 1.55 16 13 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 14 C -0.53 -29.95 8.49 25.60 0.22 -29.74 16 15 H 0.05 3.00 7.55 -2.91 -0.02 2.98 16 16 C 0.01 0.74 5.35 84.65 0.45 1.20 16 17 N -0.92 -54.33 12.30 21.45 0.26 -54.07 16 18 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.06 2.53 5.82 86.64 0.50 3.04 16 23 H 0.06 0.95 6.57 -2.39 -0.02 0.93 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.22 6.35 -2.38 -0.02 1.21 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.24 6.56 -2.39 -0.02 1.22 16 30 H 0.05 1.33 7.60 -2.39 -0.02 1.32 16 31 H 0.08 1.91 6.75 -2.39 -0.02 1.90 16 32 H 0.04 1.31 6.36 -2.39 -0.02 1.29 16 33 H 0.05 1.60 6.24 -2.39 -0.01 1.58 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 1.72 5.46 -2.39 -0.01 1.71 16 36 H 0.04 2.30 7.65 -2.39 -0.02 2.28 16 37 H 0.04 1.88 8.05 -2.38 -0.02 1.86 16 38 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.06 2.52 7.65 -2.39 -0.02 2.51 16 40 H 0.04 1.76 6.28 -2.39 -0.01 1.75 16 Total: -1.00 -59.84 297.85 3.38 -56.47 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.98 Total: 11.18 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.91 Total: -36.87 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.54 Total: -77.16 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.84 3.38 -56.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.504 kcal (2) G-P(sol) polarization free energy of solvation -59.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds