Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 H 1.08998 * 109.47288 * 303.66976 * 3 2 1 5 5 C 1.50706 * 109.46875 * 183.67053 * 3 2 1 6 6 H 1.07999 * 120.00023 * 275.24284 * 5 3 2 7 7 C 1.37878 * 119.99695 * 95.24374 * 5 3 2 8 8 N 1.31520 * 119.99415 * 188.16817 * 7 5 3 9 9 Si 1.86797 * 120.00230 * 8.16734 * 7 5 3 10 10 H 1.48505 * 109.46728 * 85.74943 * 9 7 5 11 11 H 1.48490 * 109.47250 * 205.74777 * 9 7 5 12 12 H 1.48493 * 109.47271 * 325.75325 * 9 7 5 13 13 N 1.46902 * 109.47418 * 63.67470 * 3 2 1 14 14 C 1.48538 * 111.00160 * 58.61758 * 13 3 2 15 15 C 1.54940 * 103.22380 * 159.72475 * 14 13 3 16 16 H 1.08998 * 110.72229 * 80.94502 * 15 14 13 17 17 C 1.53003 * 110.72089 * 204.22946 * 15 14 13 18 18 C 1.54590 * 102.92091 * 322.58593 * 15 14 13 19 19 C 1.48120 * 110.95546 * 175.99174 * 13 3 2 20 20 H 1.09003 * 109.99340 * 333.43556 * 19 13 3 21 21 C 1.53006 * 109.95048 * 94.79324 * 19 13 3 22 22 C 1.53004 * 109.47174 * 291.47965 * 21 19 13 23 23 H 1.09004 * 109.47282 * 184.74679 * 1 2 3 24 24 H 1.09001 * 109.46846 * 304.74497 * 1 2 3 25 25 H 1.08991 * 109.47160 * 64.74562 * 1 2 3 26 26 H 1.09000 * 109.47231 * 239.99561 * 2 1 3 27 27 H 1.09000 * 109.46841 * 120.00008 * 2 1 3 28 28 H 0.97004 * 119.99562 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.66134 * 41.28902 * 14 13 3 30 30 H 1.09002 * 110.67064 * 278.15922 * 14 13 3 31 31 H 1.08996 * 109.47190 * 173.50243 * 17 15 14 32 32 H 1.09000 * 109.47148 * 293.50519 * 17 15 14 33 33 H 1.09002 * 109.47171 * 53.50372 * 17 15 14 34 34 H 1.09004 * 110.30491 * 140.87433 * 18 15 14 35 35 H 1.08998 * 110.31341 * 262.94349 * 18 15 14 36 36 H 1.08997 * 109.46890 * 51.47993 * 21 19 13 37 37 H 1.08994 * 109.47110 * 171.47715 * 21 19 13 38 38 H 1.08996 * 109.46974 * 307.01583 * 22 21 19 39 39 H 1.08997 * 109.46939 * 67.01930 * 22 21 19 40 40 H 1.08998 * 109.47008 * 187.01648 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 -0.8552 5 6 3.5443 1.4435 -0.0910 6 1 4.1395 1.3385 0.8041 7 6 4.1607 1.5784 -1.3169 8 7 5.4621 1.4190 -1.4195 9 14 3.1473 1.9874 -2.8319 10 1 2.9787 3.4595 -2.9319 11 1 3.8437 1.4855 -4.0435 12 1 1.8140 1.3427 -2.7244 13 7 1.6241 2.1090 1.2413 14 6 2.1463 1.3905 2.4320 15 6 2.0833 2.4627 3.5487 16 1 1.0741 2.5397 3.9530 17 6 3.0900 2.1492 4.6575 18 6 2.4752 3.7600 2.8049 19 6 2.1818 3.4789 1.3196 20 1 3.1036 3.5397 0.7409 21 6 1.1619 4.4888 0.7895 22 6 0.9899 4.2963 -0.7186 23 1 -0.3634 -1.0242 0.0850 24 1 -0.3633 0.5857 0.8444 25 1 -0.3633 0.4384 -0.9294 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8958 1.5136 -2.2821 29 1 3.1740 1.0675 2.2662 30 1 1.5097 0.5406 2.6783 31 1 3.1113 2.9719 5.3721 32 1 2.7948 1.2323 5.1676 33 1 4.0811 2.0200 4.2226 34 1 1.8712 4.5958 3.1582 35 1 3.5347 3.9727 2.9476 36 1 0.2047 4.3337 1.2871 37 1 1.5151 5.5005 0.9886 38 1 1.9660 4.3278 -1.2026 39 1 0.5202 3.3316 -0.9105 40 1 0.3609 5.0923 -1.1171 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399604203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -17.432842 kcal Electronic energy + Delta-G solvation = -17284.297750 eV Core-core repulsion = 14905.117171 eV Total energy + Delta-G solvation = -2379.180578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.92469 -34.62220 -33.17647 -32.05449 -30.35281 -28.16008 -26.91720 -24.76507 -22.95955 -22.41287 -20.06173 -19.28602 -18.70256 -16.95188 -15.29974 -14.89845 -14.39761 -13.96533 -13.25195 -12.99745 -12.88002 -12.74584 -12.53759 -12.03700 -12.01262 -11.76117 -11.65839 -11.55083 -11.10052 -10.87331 -10.56948 -10.53142 -10.30392 -10.02766 -9.94110 -9.80349 -9.73475 -9.69993 -9.36593 -9.15769 -8.50759 -7.10324 -6.12922 -4.11100 3.25031 3.34618 3.36782 4.38025 4.98841 5.18027 5.27460 5.35568 5.55026 5.65550 5.86601 5.90232 6.02944 6.07351 6.10933 6.13316 6.14870 6.23414 6.31467 6.44539 6.46153 6.46827 6.56489 6.61957 6.64592 6.76753 6.78219 6.78855 6.89512 6.97310 7.06229 7.19782 7.27784 7.34209 7.63511 8.09212 8.29789 8.47021 8.93620 9.52680 10.99896 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022606 B = 0.011616 C = 0.011430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.304912 B = 2409.982840 C = 2449.023993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.161 3.839 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.896 5.896 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.262 1.262 13 N -0.505 5.505 14 C 0.044 3.956 15 C -0.098 4.098 16 H 0.069 0.931 17 C -0.140 4.140 18 C -0.118 4.118 19 C 0.062 3.938 20 H 0.080 0.920 21 C -0.099 4.099 22 C -0.156 4.156 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 3.049 6.095 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.533 5.533 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.186 1.186 13 N -0.229 5.229 14 C -0.084 4.084 15 C -0.117 4.117 16 H 0.088 0.912 17 C -0.198 4.198 18 C -0.156 4.156 19 C -0.046 4.046 20 H 0.098 0.902 21 C -0.138 4.138 22 C -0.213 4.213 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.142 3.054 5.937 10.529 hybrid contribution 0.594 0.110 -1.026 1.190 sum -7.548 3.163 4.912 9.545 Atomic orbital electron populations 1.21779 0.97918 0.99287 1.01291 1.21733 0.93312 0.99159 1.00669 1.20046 0.94182 0.90867 0.89581 0.92935 1.21549 0.90636 1.50469 0.94895 0.90644 1.25018 0.94607 0.94369 0.98574 1.69945 1.09223 1.49075 1.25087 0.87071 0.81144 0.79480 0.82969 1.19652 1.21835 1.18640 1.65079 1.53931 1.01128 1.02758 1.23139 0.99684 0.95685 0.89939 1.22044 0.98438 0.95947 0.95237 0.91248 1.21760 0.99501 1.00485 0.98068 1.22475 1.00440 0.97008 0.95721 1.22406 0.97560 0.90038 0.94638 0.90208 1.21442 0.99310 0.97280 0.95722 1.21949 1.01525 1.01137 0.96670 0.94972 0.92064 0.94263 0.93187 0.93110 0.92735 0.92275 0.92008 0.93347 0.93157 0.92552 0.92466 0.92196 0.92359 0.93181 0.92690 0.91941 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.85 37.16 0.37 -2.28 16 2 C -0.11 -2.35 5.19 -26.73 -0.14 -2.49 16 3 C 0.16 3.66 1.31 -68.86 -0.09 3.57 16 4 H 0.05 1.24 2.35 -51.93 -0.12 1.12 16 5 C -0.54 -14.28 6.60 -34.44 -0.23 -14.51 16 6 H 0.08 2.21 6.32 -52.49 -0.33 1.88 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 8 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 9 Si 0.87 21.19 26.33 -169.99 -4.48 16.72 16 10 H -0.27 -6.44 6.49 56.52 0.37 -6.07 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.19 6.65 56.52 0.38 -5.81 16 13 N -0.51 -10.20 4.20 -215.86 -0.91 -11.11 16 14 C 0.04 0.83 4.64 -1.89 -0.01 0.82 16 15 C -0.10 -1.56 3.66 -88.76 -0.32 -1.89 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 17 C -0.14 -1.98 9.16 37.16 0.34 -1.64 16 18 C -0.12 -1.98 6.14 -25.38 -0.16 -2.13 16 19 C 0.06 1.21 2.35 -66.52 -0.16 1.06 16 20 H 0.08 1.85 6.34 -51.93 -0.33 1.53 16 21 C -0.10 -1.72 5.38 -26.73 -0.14 -1.86 16 22 C -0.16 -2.84 8.84 37.16 0.33 -2.52 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.10 7.58 -51.93 -0.39 0.70 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.07 6.71 -51.93 -0.35 0.72 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.06 1.28 5.77 -51.93 -0.30 0.98 16 30 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 35 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.11 6.64 -51.93 -0.34 0.77 16 39 H 0.06 1.21 6.20 -51.93 -0.32 0.89 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -27.76 294.01 -7.60 -35.36 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.11 Total: 2.39 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -0.31 Total: -21.81 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.13 Total: -37.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.48 Total: 16.72 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.76 -7.60 -35.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399604203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.925 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds