Wall clock time and date at job start Mon Mar 30 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 H 1.08998 * 109.47288 * 303.66976 * 3 2 1 5 5 C 1.50706 * 109.46875 * 183.67053 * 3 2 1 6 6 H 1.07999 * 120.00023 * 275.24284 * 5 3 2 7 7 C 1.37878 * 119.99695 * 95.24374 * 5 3 2 8 8 N 1.31520 * 119.99415 * 188.16817 * 7 5 3 9 9 Si 1.86797 * 120.00230 * 8.16734 * 7 5 3 10 10 H 1.48505 * 109.46728 * 85.74943 * 9 7 5 11 11 H 1.48490 * 109.47250 * 205.74777 * 9 7 5 12 12 H 1.48493 * 109.47271 * 325.75325 * 9 7 5 13 13 N 1.46902 * 109.47418 * 63.67470 * 3 2 1 14 14 C 1.48538 * 111.00160 * 58.61758 * 13 3 2 15 15 C 1.54940 * 103.22380 * 159.72475 * 14 13 3 16 16 H 1.08998 * 110.72229 * 80.94502 * 15 14 13 17 17 C 1.53003 * 110.72089 * 204.22946 * 15 14 13 18 18 C 1.54590 * 102.92091 * 322.58593 * 15 14 13 19 19 C 1.48120 * 110.95546 * 175.99174 * 13 3 2 20 20 H 1.09003 * 109.99340 * 333.43556 * 19 13 3 21 21 C 1.53006 * 109.95048 * 94.79324 * 19 13 3 22 22 C 1.53004 * 109.47174 * 291.47965 * 21 19 13 23 23 H 1.09004 * 109.47282 * 184.74679 * 1 2 3 24 24 H 1.09001 * 109.46846 * 304.74497 * 1 2 3 25 25 H 1.08991 * 109.47160 * 64.74562 * 1 2 3 26 26 H 1.09000 * 109.47231 * 239.99561 * 2 1 3 27 27 H 1.09000 * 109.46841 * 120.00008 * 2 1 3 28 28 H 0.97004 * 119.99562 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.66134 * 41.28902 * 14 13 3 30 30 H 1.09002 * 110.67064 * 278.15922 * 14 13 3 31 31 H 1.08996 * 109.47190 * 173.50243 * 17 15 14 32 32 H 1.09000 * 109.47148 * 293.50519 * 17 15 14 33 33 H 1.09002 * 109.47171 * 53.50372 * 17 15 14 34 34 H 1.09004 * 110.30491 * 140.87433 * 18 15 14 35 35 H 1.08998 * 110.31341 * 262.94349 * 18 15 14 36 36 H 1.08997 * 109.46890 * 51.47993 * 21 19 13 37 37 H 1.08994 * 109.47110 * 171.47715 * 21 19 13 38 38 H 1.08996 * 109.46974 * 307.01583 * 22 21 19 39 39 H 1.08997 * 109.46939 * 67.01930 * 22 21 19 40 40 H 1.08998 * 109.47008 * 187.01648 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 -0.8552 5 6 3.5443 1.4435 -0.0910 6 1 4.1395 1.3385 0.8041 7 6 4.1607 1.5784 -1.3169 8 7 5.4621 1.4190 -1.4195 9 14 3.1473 1.9874 -2.8319 10 1 2.9787 3.4595 -2.9319 11 1 3.8437 1.4855 -4.0435 12 1 1.8140 1.3427 -2.7244 13 7 1.6241 2.1090 1.2413 14 6 2.1463 1.3905 2.4320 15 6 2.0833 2.4627 3.5487 16 1 1.0741 2.5397 3.9530 17 6 3.0900 2.1492 4.6575 18 6 2.4752 3.7600 2.8049 19 6 2.1818 3.4789 1.3196 20 1 3.1036 3.5397 0.7409 21 6 1.1619 4.4888 0.7895 22 6 0.9899 4.2963 -0.7186 23 1 -0.3634 -1.0242 0.0850 24 1 -0.3633 0.5857 0.8444 25 1 -0.3633 0.4384 -0.9294 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8958 1.5136 -2.2821 29 1 3.1740 1.0675 2.2662 30 1 1.5097 0.5406 2.6783 31 1 3.1113 2.9719 5.3721 32 1 2.7948 1.2323 5.1676 33 1 4.0811 2.0200 4.2226 34 1 1.8712 4.5958 3.1582 35 1 3.5347 3.9727 2.9476 36 1 0.2047 4.3337 1.2871 37 1 1.5151 5.5005 0.9886 38 1 1.9660 4.3278 -1.2026 39 1 0.5202 3.3316 -0.9105 40 1 0.3609 5.0923 -1.1171 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399604203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:47 Heat of formation + Delta-G solvation = -34.090581 kcal Electronic energy + Delta-G solvation = -17285.020083 eV Core-core repulsion = 14905.117171 eV Total energy + Delta-G solvation = -2379.902912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49737 -36.29069 -34.58700 -34.12899 -31.85267 -29.64492 -28.70746 -26.26592 -24.66933 -23.95356 -21.53909 -20.82100 -20.44491 -18.96006 -16.98286 -16.34152 -16.25248 -15.53734 -14.86652 -14.80144 -14.43988 -14.13871 -14.08942 -13.70473 -13.52651 -13.24741 -13.14988 -13.00079 -12.87120 -12.47053 -12.16774 -12.07601 -11.86197 -11.74080 -11.59727 -11.42440 -11.29424 -11.12468 -11.02156 -11.00774 -10.56831 -8.86789 -8.31280 -6.31041 1.28320 1.30459 1.39442 2.30634 3.03217 3.50299 3.85037 3.95287 4.20389 4.27720 4.38870 4.48676 4.56333 4.57978 4.71494 4.74994 4.80464 4.83671 4.87600 4.99042 5.00296 5.07298 5.15467 5.17021 5.21192 5.23207 5.31433 5.36596 5.37722 5.43761 5.51700 5.59605 5.60732 5.69041 5.73117 6.25841 6.46898 6.50910 6.79203 7.35709 8.85393 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022606 B = 0.011616 C = 0.011430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.304912 B = 2409.982840 C = 2449.023993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.164 3.836 4 H 0.051 0.949 5 C -0.522 4.522 6 H 0.034 0.966 7 C 0.020 3.980 8 N -0.947 5.947 9 Si 0.920 3.080 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.245 1.245 13 N -0.495 5.495 14 C 0.041 3.959 15 C -0.088 4.088 16 H 0.092 0.908 17 C -0.136 4.136 18 C -0.115 4.115 19 C 0.056 3.944 20 H 0.031 0.969 21 C -0.093 4.093 22 C -0.155 4.155 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 3.975 7.033 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.056 3.944 4 H 0.069 0.931 5 C -0.561 4.561 6 H 0.052 0.948 7 C -0.177 4.177 8 N -0.587 5.587 9 Si 0.745 3.255 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.169 1.169 13 N -0.218 5.218 14 C -0.087 4.087 15 C -0.107 4.107 16 H 0.111 0.889 17 C -0.194 4.194 18 C -0.153 4.153 19 C -0.053 4.053 20 H 0.049 0.951 21 C -0.131 4.131 22 C -0.212 4.212 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.218 3.984 6.892 13.756 hybrid contribution 1.594 -0.195 -1.221 2.018 sum -9.624 3.790 5.671 11.796 Atomic orbital electron populations 1.21656 0.94733 1.01051 1.01664 1.21667 0.96089 0.97576 0.99711 1.19960 0.91200 0.92217 0.91002 0.93093 1.21768 0.92814 1.48365 0.93176 0.94763 1.25772 0.95451 0.94781 1.01735 1.70087 1.11149 1.51760 1.25750 0.86191 0.80255 0.79929 0.79143 1.18480 1.22133 1.16859 1.65106 1.53202 1.01480 1.01993 1.23165 0.97516 0.97154 0.90873 1.22045 1.00175 0.93937 0.94555 0.88938 1.21721 0.97671 1.02167 0.97816 1.22469 1.00435 0.98551 0.93879 1.22455 0.96338 0.90380 0.96115 0.95075 1.21423 0.99292 0.97415 0.94991 1.21928 1.00308 1.01600 0.97397 0.92586 0.91458 0.94017 0.94871 0.93516 0.92894 0.96157 0.90895 0.91012 0.91751 0.94837 0.89443 0.93331 0.90499 0.91174 0.95528 0.93174 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.85 71.98 0.71 -3.79 16 2 C -0.11 -4.70 5.19 30.60 0.16 -4.54 16 3 C 0.16 7.50 1.31 44.17 0.06 7.56 16 4 H 0.05 2.37 2.35 -2.39 -0.01 2.36 16 5 C -0.52 -29.04 6.60 25.60 0.17 -28.87 16 6 H 0.03 2.15 6.32 -2.91 -0.02 2.13 16 7 C 0.02 1.18 5.47 84.65 0.46 1.64 16 8 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 9 Si 0.92 44.48 26.33 68.60 1.81 46.28 16 10 H -0.26 -12.01 6.49 99.48 0.65 -11.36 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.24 -11.06 6.65 99.48 0.66 -10.40 16 13 N -0.49 -19.55 4.20 -836.85 -3.51 -23.06 16 14 C 0.04 1.54 4.64 86.65 0.40 1.94 16 15 C -0.09 -2.62 3.66 -9.59 -0.04 -2.66 16 16 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 17 C -0.14 -3.58 9.16 71.98 0.66 -2.92 16 18 C -0.12 -3.65 6.14 31.47 0.19 -3.46 16 19 C 0.06 2.14 2.35 45.02 0.11 2.25 16 20 H 0.03 1.50 6.34 -2.39 -0.02 1.48 16 21 C -0.09 -2.97 5.38 30.60 0.16 -2.80 16 22 C -0.16 -5.33 8.84 71.98 0.64 -4.70 16 23 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.07 2.18 7.58 -2.39 -0.02 2.17 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.96 6.71 -2.39 -0.02 1.94 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.02 0.92 5.77 -2.39 -0.01 0.90 16 30 H 0.07 2.54 7.57 -2.39 -0.02 2.52 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.09 2.26 7.69 -2.38 -0.02 2.24 16 35 H 0.05 1.63 7.85 -2.39 -0.02 1.61 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.04 6.64 -2.39 -0.02 1.02 16 39 H 0.05 1.82 6.20 -2.39 -0.01 1.81 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -62.86 294.01 3.15 -59.70 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.88 Total: 16.48 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 3.68 Total: -40.34 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.21 Total: -82.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.81 Total: 46.28 kcal Total: -62.86 3.15 -59.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399604203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.613 kcal (2) G-P(sol) polarization free energy of solvation -62.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds