Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09002 * 109.47016 * 55.00506 * 3 2 1 5 5 C 1.52993 * 109.47522 * 295.00072 * 3 2 1 6 6 C 1.53002 * 109.47372 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47328 * 59.99669 * 6 5 3 8 8 C 1.52998 * 109.47109 * 300.00806 * 7 6 5 9 9 C 1.52993 * 109.47626 * 59.99289 * 8 7 6 10 10 H 1.09007 * 109.47176 * 60.00143 * 9 8 7 11 11 C 1.52998 * 109.47626 * 179.97438 * 9 8 7 12 12 N 1.46905 * 109.46891 * 295.00760 * 11 9 8 13 13 C 1.46904 * 110.99834 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47346 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00649 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99380 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00482 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46916 * 90.00103 * 18 16 14 20 20 H 1.48503 * 109.47331 * 209.99802 * 18 16 14 21 21 H 1.48494 * 109.47340 * 330.00525 * 18 16 14 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.09002 * 109.47330 * 300.00242 * 5 3 2 28 28 H 1.09000 * 109.47130 * 60.00256 * 5 3 2 29 29 H 1.09002 * 109.46816 * 300.00220 * 6 5 3 30 30 H 1.09000 * 109.47511 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.46865 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.46638 * 60.00016 * 7 6 5 33 33 H 1.09007 * 109.46726 * 299.99156 * 8 7 6 34 34 H 1.09000 * 109.46821 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46912 * 54.99789 * 11 9 8 36 36 H 1.08998 * 109.47596 * 175.00393 * 11 9 8 37 37 H 1.00892 * 111.00360 * 56.04564 * 12 11 9 38 38 H 1.09001 * 109.47491 * 299.99898 * 13 12 11 39 39 H 1.09008 * 109.47245 * 59.99524 * 13 12 11 40 40 H 0.96998 * 119.99312 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 2.1456 3.5690 -1.3075 7 6 3.6705 3.5704 -1.1820 8 6 4.0753 2.8862 0.1253 9 6 3.5648 1.4440 0.1255 10 1 3.9991 0.9047 -0.7164 11 6 3.9701 0.7596 1.4325 12 7 5.4340 0.6539 1.4963 13 6 5.8608 0.0008 2.7410 14 6 7.3647 -0.0902 2.7705 15 1 7.9455 0.2987 1.9471 16 6 7.9994 -0.6698 3.8485 17 7 7.2922 -1.1438 4.8510 18 14 9.8636 -0.7832 3.8847 19 1 10.4211 0.4339 4.5274 20 1 10.2717 -1.9829 4.6589 21 1 10.3800 -0.8905 2.4966 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 2.0698 1.5876 -2.1491 28 1 0.5488 2.1253 -1.3968 29 1 1.7113 4.1082 -0.4656 30 1 1.8569 4.0565 -2.2386 31 1 4.0340 4.5980 -1.1817 32 1 4.1048 3.0311 -2.0239 33 1 3.6410 3.4255 0.9672 34 1 5.1616 2.8877 0.2148 35 1 3.6113 1.3478 2.2770 36 1 3.5318 -0.2376 1.4717 37 1 5.8666 1.5599 1.3970 38 1 5.5150 0.5840 3.5945 39 1 5.4355 -1.0017 2.7898 40 1 7.7387 -1.5520 5.6092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401621969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = -45.663527 kcal Electronic energy + Delta-G solvation = -15975.446856 eV Core-core repulsion = 13595.042103 eV Total energy + Delta-G solvation = -2380.404753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22593 -35.14405 -33.87871 -32.62226 -30.59452 -28.99709 -26.70216 -24.15482 -23.80464 -21.53383 -20.57045 -20.47973 -19.51487 -16.42163 -15.32215 -14.93764 -14.65688 -14.51260 -14.10082 -13.86153 -13.25106 -13.18102 -12.99230 -12.65432 -12.16564 -11.85880 -11.57054 -11.40923 -11.30769 -11.03835 -10.94199 -10.84048 -10.72636 -10.63048 -10.52705 -10.16509 -9.99158 -9.69157 -9.51970 -9.08344 -8.44986 -7.20895 -6.00171 -4.01924 3.33592 3.39437 3.44402 4.45525 4.72110 4.80947 4.83046 5.12584 5.18805 5.30915 5.35582 5.37771 5.47117 5.59866 5.62694 5.67245 5.71515 5.80177 5.82249 5.94603 6.07676 6.09734 6.11230 6.18889 6.23777 6.29807 6.37977 6.40006 6.43860 6.53525 6.70418 6.80720 7.32088 7.47712 7.82830 8.17880 8.46706 8.68465 9.07814 9.62913 11.11055 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.005395 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.055142 B = 5189.015232 C = 5766.007793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.080 4.080 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.116 4.116 9 C -0.079 4.079 10 H 0.075 0.925 11 C 0.061 3.939 12 N -0.690 5.690 13 C 0.193 3.807 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.326 0.674 38 H -0.016 1.016 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 7.177 -11.005 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.099 4.099 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.097 4.097 10 H 0.094 0.906 11 C -0.069 4.069 12 N -0.321 5.321 13 C 0.067 3.933 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.002 0.998 39 H 0.045 0.955 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.121 6.488 -11.190 17.727 hybrid contribution 0.820 0.558 0.891 1.334 sum -11.300 7.046 -10.299 16.835 Atomic orbital electron populations 1.21821 0.96448 1.01186 1.01446 1.21662 0.95208 0.96744 1.02594 1.21162 0.95574 0.95632 0.97510 0.91612 1.21614 1.00059 0.95559 0.97809 1.21534 0.96161 0.96852 1.01066 1.21518 0.95519 1.00083 0.98366 1.21594 1.01178 0.95624 0.96984 1.21188 0.93897 0.95575 0.99082 0.90618 1.22007 0.91026 0.99279 0.94556 1.60709 1.04216 1.25918 1.41299 1.19539 0.95667 0.94020 0.84121 1.21207 0.91500 1.38499 1.03944 0.92018 1.24998 0.98602 0.95529 0.95507 1.69973 1.35387 1.40123 1.08364 0.86487 0.85336 0.77438 0.78083 1.20749 1.21248 1.19767 0.93123 0.93005 0.92881 0.91215 0.92059 0.92139 0.92226 0.92340 0.92612 0.92528 0.92080 0.92572 0.91379 0.96771 0.91543 0.85633 0.99790 0.95547 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.12 -1.50 5.19 -26.73 -0.14 -1.64 16 3 C -0.08 -0.98 1.72 -90.62 -0.16 -1.13 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.11 -1.19 4.96 -26.73 -0.13 -1.33 16 6 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 7 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 8 C -0.12 -1.57 4.97 -26.74 -0.13 -1.71 16 9 C -0.08 -1.14 1.92 -90.62 -0.17 -1.32 16 10 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 11 C 0.06 1.12 4.94 -3.82 -0.02 1.10 16 12 N -0.69 -15.27 6.49 -115.05 -0.75 -16.02 16 13 C 0.19 5.23 5.44 -4.98 -0.03 5.21 16 14 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 15 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 18 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 25 H 0.07 0.94 6.07 -51.93 -0.32 0.62 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.00 6.68 -51.93 -0.35 0.65 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 1.24 6.07 -51.93 -0.32 0.93 16 37 H 0.33 6.90 6.97 -39.30 -0.27 6.62 16 38 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 39 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -29.80 305.10 -8.99 -38.79 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.40 Total: 0.84 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.16 Total: -18.57 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.01 Total: -42.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.80 -8.99 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401621969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.874 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds