Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09002 * 109.47016 * 55.00506 * 3 2 1 5 5 C 1.52993 * 109.47522 * 295.00072 * 3 2 1 6 6 C 1.53002 * 109.47372 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47328 * 59.99669 * 6 5 3 8 8 C 1.52998 * 109.47109 * 300.00806 * 7 6 5 9 9 C 1.52993 * 109.47626 * 59.99289 * 8 7 6 10 10 H 1.09007 * 109.47176 * 60.00143 * 9 8 7 11 11 C 1.52998 * 109.47626 * 179.97438 * 9 8 7 12 12 N 1.46905 * 109.46891 * 295.00760 * 11 9 8 13 13 C 1.46904 * 110.99834 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47346 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00649 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99380 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00482 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46916 * 90.00103 * 18 16 14 20 20 H 1.48503 * 109.47331 * 209.99802 * 18 16 14 21 21 H 1.48494 * 109.47340 * 330.00525 * 18 16 14 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.09002 * 109.47330 * 300.00242 * 5 3 2 28 28 H 1.09000 * 109.47130 * 60.00256 * 5 3 2 29 29 H 1.09002 * 109.46816 * 300.00220 * 6 5 3 30 30 H 1.09000 * 109.47511 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.46865 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.46638 * 60.00016 * 7 6 5 33 33 H 1.09007 * 109.46726 * 299.99156 * 8 7 6 34 34 H 1.09000 * 109.46821 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46912 * 54.99789 * 11 9 8 36 36 H 1.08998 * 109.47596 * 175.00393 * 11 9 8 37 37 H 1.00892 * 111.00360 * 56.04564 * 12 11 9 38 38 H 1.09001 * 109.47491 * 299.99898 * 13 12 11 39 39 H 1.09008 * 109.47245 * 59.99524 * 13 12 11 40 40 H 0.96998 * 119.99312 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 2.1456 3.5690 -1.3075 7 6 3.6705 3.5704 -1.1820 8 6 4.0753 2.8862 0.1253 9 6 3.5648 1.4440 0.1255 10 1 3.9991 0.9047 -0.7164 11 6 3.9701 0.7596 1.4325 12 7 5.4340 0.6539 1.4963 13 6 5.8608 0.0008 2.7410 14 6 7.3647 -0.0902 2.7705 15 1 7.9455 0.2987 1.9471 16 6 7.9994 -0.6698 3.8485 17 7 7.2922 -1.1438 4.8510 18 14 9.8636 -0.7832 3.8847 19 1 10.4211 0.4339 4.5274 20 1 10.2717 -1.9829 4.6589 21 1 10.3800 -0.8905 2.4966 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 2.0698 1.5876 -2.1491 28 1 0.5488 2.1253 -1.3968 29 1 1.7113 4.1082 -0.4656 30 1 1.8569 4.0565 -2.2386 31 1 4.0340 4.5980 -1.1817 32 1 4.1048 3.0311 -2.0239 33 1 3.6410 3.4255 0.9672 34 1 5.1616 2.8877 0.2148 35 1 3.6113 1.3478 2.2770 36 1 3.5318 -0.2376 1.4717 37 1 5.8666 1.5599 1.3970 38 1 5.5150 0.5840 3.5945 39 1 5.4355 -1.0017 2.7898 40 1 7.7387 -1.5520 5.6092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401621969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = -63.180449 kcal Electronic energy + Delta-G solvation = -15976.206447 eV Core-core repulsion = 13595.042103 eV Total energy + Delta-G solvation = -2381.164343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32304 -36.90273 -34.81367 -34.66093 -32.07012 -29.94412 -28.60834 -25.68880 -24.83385 -23.46146 -21.81837 -21.46275 -20.59404 -18.59024 -16.90403 -16.39020 -16.19328 -15.69649 -15.43147 -14.90979 -14.55072 -14.49399 -14.35042 -14.07002 -13.55255 -13.40514 -13.17541 -12.67737 -12.62337 -12.44858 -12.37532 -12.22229 -11.93629 -11.92360 -11.79739 -11.59376 -11.33770 -11.24750 -10.69384 -10.68008 -10.60990 -9.12594 -8.24142 -6.36083 1.40188 1.42463 1.54463 2.39246 3.08874 3.53557 3.76816 3.82715 3.92579 4.15220 4.30139 4.37597 4.44913 4.54650 4.58720 4.61281 4.66890 4.79518 4.85274 4.91287 4.92916 5.03103 5.06847 5.15698 5.21253 5.21579 5.26456 5.34260 5.35944 5.40713 5.45055 5.45874 5.60224 5.61853 5.70887 6.00775 6.44230 6.71968 6.87943 7.35227 8.87786 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.005395 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.055142 B = 5189.015232 C = 5766.007793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.075 4.075 4 H 0.063 0.937 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.068 4.068 10 H 0.067 0.933 11 C 0.062 3.938 12 N -0.688 5.688 13 C 0.208 3.792 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.008 0.992 36 H 0.058 0.942 37 H 0.333 0.667 38 H -0.043 1.043 39 H -0.003 1.003 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.207 8.150 -12.466 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.094 4.094 4 H 0.081 0.919 5 C -0.146 4.146 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.087 4.087 10 H 0.086 0.914 11 C -0.067 4.067 12 N -0.319 5.319 13 C 0.080 3.920 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.800 3.200 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.188 1.188 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.151 0.849 38 H -0.025 1.025 39 H 0.015 0.985 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.177 7.476 -12.670 19.098 hybrid contribution 0.785 0.240 1.364 1.592 sum -11.392 7.717 -11.306 17.809 Atomic orbital electron populations 1.21784 0.94634 1.01801 1.02214 1.21651 0.96829 0.96381 1.01480 1.21120 0.93394 0.96032 0.98829 0.91868 1.21591 1.01157 0.95555 0.96273 1.21536 0.94979 0.96685 1.02184 1.21493 0.96644 1.00342 0.96610 1.21581 1.00158 0.95040 0.98611 1.21095 0.95864 0.95705 0.96067 0.91441 1.22098 0.88492 0.99373 0.96740 1.60605 1.06725 1.26238 1.38349 1.19198 0.95163 0.92451 0.85206 1.21549 0.92392 1.39137 1.04460 0.91732 1.26005 1.04338 0.94650 0.94810 1.70106 1.37822 1.40567 1.09055 0.85280 0.78300 0.77860 0.78534 1.19537 1.20584 1.18817 0.92678 0.92961 0.91318 0.93479 0.92067 0.92026 0.90499 0.92154 0.90670 0.91390 0.92053 0.92758 0.92899 0.97411 0.92382 0.84858 1.02539 0.98493 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.67 71.98 0.70 -2.06 16 2 C -0.13 -2.96 5.19 30.60 0.16 -2.80 16 3 C -0.07 -1.75 1.72 -10.79 -0.02 -1.77 16 4 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 5 C -0.11 -2.00 4.96 30.59 0.15 -1.85 16 6 C -0.12 -2.04 5.92 30.60 0.18 -1.86 16 7 C -0.11 -2.33 5.92 30.59 0.18 -2.15 16 8 C -0.12 -3.07 4.97 30.59 0.15 -2.92 16 9 C -0.07 -1.98 1.92 -10.80 -0.02 -2.00 16 10 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 11 C 0.06 2.36 4.94 86.30 0.43 2.78 16 12 N -0.69 -31.40 6.49 -517.92 -3.36 -34.76 16 13 C 0.21 11.73 5.44 85.55 0.47 12.20 16 14 C -0.54 -31.74 9.32 25.60 0.24 -31.50 16 15 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 18 Si 0.98 45.09 29.54 68.60 2.03 47.12 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.07 6.56 -2.39 -0.02 1.06 16 25 H 0.05 1.30 6.07 -2.39 -0.01 1.29 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.20 6.56 -2.39 -0.02 1.18 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 34 H 0.05 1.54 6.68 -2.39 -0.02 1.52 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 2.28 6.07 -2.39 -0.01 2.27 16 37 H 0.33 14.42 6.97 -89.70 -0.63 13.80 16 38 H -0.04 -2.61 8.14 -2.39 -0.02 -2.63 16 39 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -64.43 305.10 2.38 -62.05 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.35 Total: 16.71 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 3.07 Total: -33.47 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -3.08 Total: -92.40 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.43 2.38 -62.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401621969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.132 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds