Wall clock time and date at job start Mon Mar 30 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46751 * 2 1 4 4 H 1.09002 * 109.47342 * 305.00077 * 3 2 1 5 5 C 1.52997 * 109.47203 * 65.00275 * 3 2 1 6 6 C 1.53000 * 109.47203 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47136 * 299.99593 * 6 5 3 8 8 C 1.52997 * 109.46742 * 60.00125 * 7 6 5 9 9 C 1.53000 * 109.47203 * 299.99834 * 8 7 6 10 10 H 1.09002 * 109.47342 * 300.00198 * 9 8 7 11 11 C 1.53007 * 109.47194 * 180.02562 * 9 8 7 12 12 N 1.46898 * 109.46764 * 65.00211 * 11 9 8 13 13 C 1.46906 * 110.99888 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99835 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47183 * 60.00274 * 18 16 14 20 20 H 1.48496 * 109.47425 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47216 * 300.00267 * 18 16 14 22 22 H 1.08994 * 109.47106 * 299.99702 * 1 2 3 23 23 H 1.08997 * 109.47106 * 60.00405 * 1 2 3 24 24 H 1.09003 * 109.46416 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47106 * 240.00298 * 2 1 3 26 26 H 1.08993 * 109.47347 * 120.00043 * 2 1 3 27 27 H 1.09001 * 109.47175 * 299.99677 * 5 3 2 28 28 H 1.09005 * 109.47632 * 59.99654 * 5 3 2 29 29 H 1.09002 * 109.47342 * 59.99802 * 6 5 3 30 30 H 1.09000 * 109.47379 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47604 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47176 * 300.00311 * 7 6 5 33 33 H 1.09001 * 109.47175 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47133 * 60.00160 * 8 7 6 35 35 H 1.08995 * 109.47210 * 305.00164 * 11 9 8 36 36 H 1.08997 * 109.46954 * 185.00148 * 11 9 8 37 37 H 1.00902 * 111.00533 * 56.04323 * 12 11 9 38 38 H 1.09000 * 109.47033 * 300.00113 * 13 12 11 39 39 H 1.09001 * 109.46544 * 60.00058 * 13 12 11 40 40 H 0.96992 * 120.00038 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1457 3.5689 1.3076 7 6 3.6706 3.5702 1.1822 8 6 4.0753 2.8862 -0.1251 9 6 3.5648 1.4439 -0.1254 10 1 3.9991 0.9046 0.7164 11 6 3.9701 0.7597 -1.4325 12 7 5.4339 0.6538 -1.4963 13 6 5.8607 -0.0002 -2.7406 14 6 7.3646 -0.0912 -2.7700 15 1 7.9454 0.2982 -1.9469 16 6 7.9993 -0.6717 -3.8476 17 7 7.2921 -1.1455 -4.8502 18 14 9.8635 -0.7839 -3.8844 19 1 10.3347 -1.5771 -2.7207 20 1 10.2949 -1.4452 -5.1421 21 1 10.4430 0.5819 -3.8198 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.5489 2.1252 1.3969 28 1 2.0698 1.5875 2.1492 29 1 1.7114 4.1082 0.4658 30 1 1.8577 4.0560 2.2392 31 1 4.0343 4.5977 1.1829 32 1 4.1048 3.0309 2.0241 33 1 5.1616 2.8868 -0.2143 34 1 3.6410 3.4255 -0.9669 35 1 3.6112 1.3479 -2.2770 36 1 3.5317 -0.2375 -1.4718 37 1 5.7969 0.1680 -0.6899 38 1 5.4354 -1.0027 -2.7885 39 1 5.5148 0.5825 -3.5944 40 1 7.7385 -1.5542 -5.6081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401621970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:29 Heat of formation + Delta-G solvation = -45.966775 kcal Electronic energy + Delta-G solvation = -15969.719153 eV Core-core repulsion = 13589.301251 eV Total energy + Delta-G solvation = -2380.417903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17272 -35.12366 -33.84681 -32.60797 -30.61494 -28.95323 -26.71074 -24.01590 -23.80275 -21.49346 -20.64928 -20.41836 -19.53700 -16.37688 -15.27523 -14.83009 -14.68644 -14.52413 -14.13812 -13.70379 -13.37602 -13.21189 -12.96834 -12.41264 -12.17574 -11.74121 -11.63644 -11.36017 -11.32677 -11.11856 -10.93923 -10.72453 -10.70395 -10.62241 -10.53443 -10.14272 -9.96576 -9.67362 -9.55877 -9.09278 -8.43819 -7.18146 -5.99931 -4.01793 3.35496 3.39144 3.42409 4.45479 4.73987 4.83867 4.85257 5.14417 5.21983 5.34779 5.35327 5.36642 5.50336 5.57979 5.69050 5.72193 5.74216 5.83287 5.90026 5.95429 6.05022 6.10172 6.17405 6.18499 6.26345 6.29927 6.41251 6.45666 6.48722 6.61591 6.80491 6.84020 7.31534 7.47870 7.82514 8.17930 8.46448 8.68176 9.07740 9.62996 11.11230 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037213 B = 0.005393 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.245864 B = 5191.113274 C = 5764.029552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.081 4.081 4 H 0.068 0.932 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.105 4.105 9 C -0.076 4.076 10 H 0.063 0.937 11 C 0.061 3.939 12 N -0.688 5.688 13 C 0.194 3.806 14 C -0.513 4.513 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.326 0.674 38 H -0.016 1.016 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 5.777 11.596 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.100 4.100 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.143 4.143 9 C -0.095 4.095 10 H 0.082 0.918 11 C -0.069 4.069 12 N -0.318 5.318 13 C 0.068 3.932 14 C -0.552 4.552 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.142 0.858 38 H 0.002 0.998 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.031 6.324 11.146 17.578 hybrid contribution 0.723 -1.081 -0.035 1.301 sum -11.308 5.243 11.111 16.698 Atomic orbital electron populations 1.21814 0.96384 1.01155 1.01524 1.21682 0.95347 0.96914 1.02375 1.21178 0.95712 0.95460 0.97637 0.91404 1.21606 0.99998 0.95683 0.97684 1.21539 0.96400 0.96699 1.00991 1.21575 0.95266 1.00197 0.98754 1.21461 1.02208 0.94519 0.96076 1.21158 0.93709 0.96658 0.98007 0.91847 1.22012 0.90711 0.97705 0.96463 1.60646 1.06817 1.57898 1.06478 1.19527 0.95499 0.91504 0.86716 1.21169 0.91555 1.37826 1.04639 0.92059 1.24994 0.98571 0.95506 0.95538 1.69958 1.35492 1.40064 1.08357 0.86547 0.85342 0.78277 0.77136 1.20293 1.21364 1.20168 0.92846 0.92927 0.93183 0.91271 0.92305 0.92289 0.92314 0.92289 0.92760 0.92575 0.92413 0.90355 0.92629 0.92155 0.96135 0.85796 0.99813 0.95585 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.13 -1.50 5.19 -26.73 -0.14 -1.64 16 3 C -0.08 -0.99 1.72 -90.62 -0.16 -1.14 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.11 -1.20 4.96 -26.73 -0.13 -1.33 16 6 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 7 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 8 C -0.11 -1.50 5.09 -26.73 -0.14 -1.64 16 9 C -0.08 -1.10 1.86 -90.62 -0.17 -1.27 16 10 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 11 C 0.06 1.10 4.87 -3.82 -0.02 1.08 16 12 N -0.69 -14.97 5.94 -115.05 -0.68 -15.66 16 13 C 0.19 5.22 5.44 -4.97 -0.03 5.19 16 14 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 15 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.93 6.07 -51.93 -0.32 0.61 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.38 6.07 -51.93 -0.32 0.06 16 37 H 0.33 6.82 8.72 -39.29 -0.34 6.48 16 38 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -29.45 307.36 -9.01 -38.46 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.52 Total: 0.73 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.15 Total: -18.54 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.05 Total: -42.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.45 -9.01 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401621970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.510 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds