Wall clock time and date at job start Mon Mar 30 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46751 * 2 1 4 4 H 1.09002 * 109.47342 * 305.00077 * 3 2 1 5 5 C 1.52997 * 109.47203 * 65.00275 * 3 2 1 6 6 C 1.53000 * 109.47203 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47136 * 299.99593 * 6 5 3 8 8 C 1.52997 * 109.46742 * 60.00125 * 7 6 5 9 9 C 1.53000 * 109.47203 * 299.99834 * 8 7 6 10 10 H 1.09002 * 109.47342 * 300.00198 * 9 8 7 11 11 C 1.53007 * 109.47194 * 180.02562 * 9 8 7 12 12 N 1.46898 * 109.46764 * 65.00211 * 11 9 8 13 13 C 1.46906 * 110.99888 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99835 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47183 * 60.00274 * 18 16 14 20 20 H 1.48496 * 109.47425 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47216 * 300.00267 * 18 16 14 22 22 H 1.08994 * 109.47106 * 299.99702 * 1 2 3 23 23 H 1.08997 * 109.47106 * 60.00405 * 1 2 3 24 24 H 1.09003 * 109.46416 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47106 * 240.00298 * 2 1 3 26 26 H 1.08993 * 109.47347 * 120.00043 * 2 1 3 27 27 H 1.09001 * 109.47175 * 299.99677 * 5 3 2 28 28 H 1.09005 * 109.47632 * 59.99654 * 5 3 2 29 29 H 1.09002 * 109.47342 * 59.99802 * 6 5 3 30 30 H 1.09000 * 109.47379 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47604 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47176 * 300.00311 * 7 6 5 33 33 H 1.09001 * 109.47175 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47133 * 60.00160 * 8 7 6 35 35 H 1.08995 * 109.47210 * 305.00164 * 11 9 8 36 36 H 1.08997 * 109.46954 * 185.00148 * 11 9 8 37 37 H 1.00902 * 111.00533 * 56.04323 * 12 11 9 38 38 H 1.09000 * 109.47033 * 300.00113 * 13 12 11 39 39 H 1.09001 * 109.46544 * 60.00058 * 13 12 11 40 40 H 0.96992 * 120.00038 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1457 3.5689 1.3076 7 6 3.6706 3.5702 1.1822 8 6 4.0753 2.8862 -0.1251 9 6 3.5648 1.4439 -0.1254 10 1 3.9991 0.9046 0.7164 11 6 3.9701 0.7597 -1.4325 12 7 5.4339 0.6538 -1.4963 13 6 5.8607 -0.0002 -2.7406 14 6 7.3646 -0.0912 -2.7700 15 1 7.9454 0.2982 -1.9469 16 6 7.9993 -0.6717 -3.8476 17 7 7.2921 -1.1455 -4.8502 18 14 9.8635 -0.7839 -3.8844 19 1 10.3347 -1.5771 -2.7207 20 1 10.2949 -1.4452 -5.1421 21 1 10.4430 0.5819 -3.8198 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.5489 2.1252 1.3969 28 1 2.0698 1.5875 2.1492 29 1 1.7114 4.1082 0.4658 30 1 1.8577 4.0560 2.2392 31 1 4.0343 4.5977 1.1829 32 1 4.1048 3.0309 2.0241 33 1 5.1616 2.8868 -0.2143 34 1 3.6410 3.4255 -0.9669 35 1 3.6112 1.3479 -2.2770 36 1 3.5317 -0.2375 -1.4718 37 1 5.7969 0.1680 -0.6899 38 1 5.4354 -1.0027 -2.7885 39 1 5.5148 0.5825 -3.5944 40 1 7.7385 -1.5542 -5.6081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401621970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:29 Heat of formation + Delta-G solvation = -63.028317 kcal Electronic energy + Delta-G solvation = -15970.458997 eV Core-core repulsion = 13589.301251 eV Total energy + Delta-G solvation = -2381.157747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27499 -36.88548 -34.79709 -34.63767 -32.08269 -29.91552 -28.61568 -25.60811 -24.76984 -23.43767 -21.92437 -21.40440 -20.61154 -18.55191 -16.82843 -16.32510 -16.16715 -15.73634 -15.40856 -14.94530 -14.66671 -14.40850 -14.26466 -14.02556 -13.49721 -13.36608 -12.99620 -12.83404 -12.59850 -12.49048 -12.35376 -12.22040 -12.01154 -11.87151 -11.71332 -11.56971 -11.37396 -11.23493 -10.76080 -10.63897 -10.58943 -9.05876 -8.23257 -6.35119 1.40455 1.44575 1.52609 2.39643 3.09711 3.54694 3.74704 3.84314 4.02952 4.13670 4.27546 4.41156 4.50506 4.53931 4.61105 4.62328 4.73505 4.82167 4.85310 4.90518 4.93509 5.03765 5.09003 5.17744 5.21136 5.23267 5.27151 5.35342 5.37817 5.45636 5.47499 5.51438 5.60551 5.66298 5.71808 6.01501 6.45408 6.72727 6.89068 7.36124 8.88387 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037213 B = 0.005393 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.245864 B = 5191.113274 C = 5764.029552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.076 4.076 4 H 0.062 0.938 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.104 4.104 9 C -0.067 4.067 10 H 0.065 0.935 11 C 0.063 3.937 12 N -0.684 5.684 13 C 0.209 3.791 14 C -0.537 4.537 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.268 1.268 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.333 0.667 38 H -0.043 1.043 39 H -0.005 1.005 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 6.395 13.326 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.095 4.095 4 H 0.081 0.919 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.142 4.142 9 C -0.085 4.085 10 H 0.083 0.917 11 C -0.067 4.067 12 N -0.314 5.314 13 C 0.081 3.919 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.193 1.193 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.149 0.851 38 H -0.025 1.025 39 H 0.013 0.987 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.158 6.952 12.899 19.040 hybrid contribution 0.710 -1.274 -0.596 1.576 sum -11.448 5.678 12.303 17.739 Atomic orbital electron populations 1.21782 0.94684 1.01778 1.02230 1.21660 0.96866 0.96383 1.01428 1.21132 0.93520 0.95991 0.98844 0.91912 1.21584 1.01120 0.95502 0.96276 1.21536 0.95031 0.96756 1.02063 1.21533 0.96560 1.00279 0.96933 1.21414 1.00517 0.94570 0.97655 1.21080 0.95693 0.96314 0.95463 0.91688 1.22085 0.88265 0.97920 0.98389 1.60530 1.09357 1.56806 1.04725 1.19180 0.94992 0.89760 0.87951 1.21526 0.92482 1.38326 1.05151 0.91679 1.25996 1.04265 0.94681 0.94862 1.70096 1.37878 1.40578 1.09042 0.85346 0.78374 0.78698 0.77633 1.18983 1.20713 1.19290 0.91298 0.93011 0.92686 0.93518 0.91966 0.90543 0.91922 0.92288 0.90752 0.91779 0.92059 0.92847 0.93382 0.93479 0.96318 0.85051 1.02518 0.98654 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.67 71.98 0.70 -2.02 16 2 C -0.13 -2.87 5.19 30.60 0.16 -2.72 16 3 C -0.08 -1.76 1.72 -10.79 -0.02 -1.78 16 4 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 5 C -0.11 -1.98 4.96 30.59 0.15 -1.83 16 6 C -0.12 -2.11 5.92 30.59 0.18 -1.93 16 7 C -0.12 -2.50 5.92 30.59 0.18 -2.32 16 8 C -0.10 -2.93 5.09 30.59 0.16 -2.78 16 9 C -0.07 -1.91 1.86 -10.79 -0.02 -1.93 16 10 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 11 C 0.06 2.34 4.87 86.31 0.42 2.76 16 12 N -0.68 -30.71 5.94 -517.92 -3.08 -33.79 16 13 C 0.21 11.71 5.44 85.56 0.47 12.18 16 14 C -0.54 -31.52 9.32 25.60 0.24 -31.28 16 15 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 18 Si 0.98 45.01 29.54 68.60 2.03 47.04 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H 0.07 1.06 6.56 -2.39 -0.02 1.04 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 1.26 6.07 -2.39 -0.01 1.25 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.19 6.57 -2.39 -0.02 1.17 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.76 7.75 -2.39 -0.02 1.74 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.02 0.71 6.07 -2.39 -0.01 0.70 16 37 H 0.33 14.19 8.72 -89.69 -0.78 13.41 16 38 H -0.04 -2.58 8.14 -2.39 -0.02 -2.60 16 39 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -63.85 307.36 2.50 -61.35 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.19 Total: 16.19 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 3.07 Total: -33.18 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -2.79 Total: -91.41 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.85 2.50 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401621970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.681 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds