Wall clock time and date at job start Mon Mar 30 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46888 * 2 1 4 4 H 1.08999 * 109.46883 * 55.00247 * 3 2 1 5 5 C 1.53000 * 109.47138 * 295.00179 * 3 2 1 6 6 C 1.53002 * 109.46970 * 299.99938 * 5 3 2 7 7 C 1.52997 * 109.47133 * 299.99771 * 6 5 3 8 8 C 1.53000 * 109.47006 * 60.00251 * 7 6 5 9 9 C 1.52994 * 109.47085 * 300.00020 * 8 7 6 10 10 H 1.09005 * 109.47345 * 299.99857 * 9 8 7 11 11 C 1.53000 * 109.47085 * 180.02562 * 9 8 7 12 12 N 1.46905 * 109.47234 * 64.99829 * 11 9 8 13 13 C 1.46902 * 110.99800 * 179.97438 * 12 11 9 14 14 C 1.50706 * 109.46577 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.72326 * 14 13 12 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 H 1.09003 * 109.47029 * 299.99986 * 1 2 3 23 23 H 1.09003 * 109.47642 * 60.00000 * 1 2 3 24 24 H 1.09002 * 109.46834 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47573 * 240.00784 * 2 1 3 26 26 H 1.09003 * 109.47642 * 119.99999 * 2 1 3 27 27 H 1.09003 * 109.47135 * 59.99482 * 5 3 2 28 28 H 1.08997 * 109.47054 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47213 * 60.00121 * 6 5 3 30 30 H 1.09002 * 109.46808 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.47047 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47356 * 300.00262 * 7 6 5 33 33 H 1.09003 * 109.47125 * 179.97438 * 8 7 6 34 34 H 1.09010 * 109.47351 * 59.99992 * 8 7 6 35 35 H 1.08993 * 109.47319 * 304.99784 * 11 9 8 36 36 H 1.09002 * 109.47089 * 184.99839 * 11 9 8 37 37 H 1.00898 * 110.99743 * 56.04920 * 12 11 9 38 38 H 1.09000 * 109.47263 * 60.00269 * 13 12 11 39 39 H 1.09001 * 109.47582 * 299.99548 * 13 12 11 40 40 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.2452 1.3700 -2.4890 7 6 3.7700 1.3720 -2.3633 8 6 4.1748 0.6880 -1.0560 9 6 3.5647 1.4445 0.1256 10 1 3.9280 2.4722 0.1257 11 6 3.9701 0.7608 1.4330 12 7 5.4243 0.8686 1.6116 13 6 5.8506 0.2221 2.8599 14 6 7.3446 0.3533 3.0086 15 1 7.9202 0.8617 2.2493 16 6 7.9772 -0.1812 4.1109 17 7 9.2809 -0.0672 4.2404 18 14 6.9827 -1.0686 5.4197 19 1 6.8939 -2.5116 5.0805 20 1 7.6468 -0.9100 6.7383 21 1 5.6166 -0.4894 5.4807 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.5488 2.1252 -1.3969 28 1 1.9980 3.1544 -1.3071 29 1 1.8819 0.3424 -2.4890 30 1 1.9564 1.8571 -3.4204 31 1 4.2046 0.8326 -3.2049 32 1 4.1333 2.3996 -2.3633 33 1 5.2612 0.6889 -0.9666 34 1 3.8115 -0.3398 -1.0559 35 1 3.6855 -0.2907 1.3966 36 1 3.4645 1.2453 2.2683 37 1 5.7215 1.8324 1.5840 38 1 5.5790 -0.8332 2.8338 39 1 5.3582 0.7033 3.7049 40 1 9.7261 -0.4436 5.0158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401621972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:33 Heat of formation + Delta-G solvation = -37.873495 kcal Electronic energy + Delta-G solvation = -16137.495781 eV Core-core repulsion = 13757.428829 eV Total energy + Delta-G solvation = -2380.066952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55559 -35.35791 -33.20653 -32.59298 -30.88198 -29.25450 -27.23920 -24.05781 -23.71225 -21.80348 -21.08080 -20.73945 -18.11289 -16.75554 -15.68662 -15.28971 -14.77643 -14.34364 -14.18298 -13.92002 -13.37816 -13.24624 -12.75094 -12.39935 -12.32886 -12.10084 -11.98849 -11.65637 -11.40918 -11.29798 -11.02640 -10.88492 -10.68716 -10.51879 -10.34663 -9.91669 -9.88051 -9.75725 -9.56648 -9.24074 -8.56795 -7.38907 -6.04085 -4.01603 3.30000 3.36901 3.39761 4.43711 4.69863 4.75956 4.78876 5.15577 5.19043 5.23426 5.28816 5.30894 5.40531 5.57312 5.58901 5.65271 5.70966 5.77018 5.83711 5.87567 5.98985 6.00591 6.09983 6.14524 6.23285 6.24872 6.29184 6.40974 6.43921 6.54468 6.73808 6.79513 6.83179 7.06761 7.64246 7.94791 8.39362 8.68623 9.04381 9.58354 11.09318 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039289 B = 0.005784 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.488449 B = 4839.914947 C = 5332.347481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.081 4.081 4 H 0.064 0.936 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.107 4.107 9 C -0.077 4.077 10 H 0.065 0.935 11 C 0.060 3.940 12 N -0.679 5.679 13 C 0.164 3.836 14 C -0.514 4.514 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.015 0.985 37 H 0.333 0.667 38 H 0.020 0.980 39 H -0.018 1.018 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 2.509 -10.711 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.100 4.100 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.158 4.158 8 C -0.144 4.144 9 C -0.096 4.096 10 H 0.083 0.917 11 C -0.070 4.070 12 N -0.309 5.309 13 C 0.036 3.964 14 C -0.553 4.553 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.150 0.850 38 H 0.038 0.962 39 H 0.000 1.000 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.846 1.899 -10.968 20.192 hybrid contribution -0.724 0.117 1.516 1.684 sum -17.570 2.016 -9.452 20.053 Atomic orbital electron populations 1.21825 0.96531 1.01124 1.01473 1.21733 0.95117 0.96885 1.02591 1.21147 0.95568 0.96049 0.97261 0.91751 1.21559 0.99759 0.99012 0.94689 1.21571 0.96160 1.00580 0.97439 1.21565 0.95196 1.00830 0.98166 1.21494 1.01892 0.98580 0.92466 1.21136 0.93624 0.99529 0.95292 0.91694 1.22042 0.90255 0.99995 0.94746 1.60472 1.09688 1.21136 1.39568 1.19984 0.96731 0.94118 0.85581 1.21085 0.90253 1.36804 1.07128 0.90309 1.24912 0.94778 0.95860 0.97832 1.69906 1.08226 1.46187 1.29732 0.86822 0.80694 0.80565 0.81423 1.20162 1.21231 1.19313 0.93097 0.92789 0.93202 0.91291 0.91683 0.92276 0.92341 0.91878 0.92838 0.92525 0.92384 0.90353 0.92314 0.91646 0.96687 0.84985 0.96168 1.00024 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.15 0.36 -1.10 16 2 C -0.13 -1.41 4.48 -26.73 -0.12 -1.53 16 3 C -0.08 -0.94 2.19 -90.62 -0.20 -1.14 16 4 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.11 -1.14 5.21 -26.73 -0.14 -1.28 16 6 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 7 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 8 C -0.11 -1.46 4.82 -26.73 -0.13 -1.59 16 9 C -0.08 -1.06 2.10 -90.62 -0.19 -1.25 16 10 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 11 C 0.06 1.01 4.58 -3.82 -0.02 0.99 16 12 N -0.68 -14.17 5.95 -115.05 -0.68 -14.86 16 13 C 0.16 4.07 4.51 -4.97 -0.02 4.05 16 14 C -0.51 -14.97 9.87 -34.44 -0.34 -15.31 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 18 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.77 4.83 -51.93 -0.25 0.52 16 26 H 0.06 0.81 6.29 -51.93 -0.33 0.48 16 27 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.63 6.32 -51.93 -0.33 0.31 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 34 H 0.06 0.81 6.55 -51.92 -0.34 0.47 16 35 H 0.07 1.12 6.60 -51.93 -0.34 0.78 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.33 6.79 8.72 -39.29 -0.34 6.45 16 38 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 39 H -0.02 -0.45 7.20 -51.93 -0.37 -0.82 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -29.95 297.19 -8.48 -38.43 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.18 Total: 1.09 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -1.20 Total: -19.15 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.09 Total: -42.14 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.95 -8.48 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401621972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.557 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds