Wall clock time and date at job start Mon Mar 30 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46888 * 2 1 4 4 H 1.08999 * 109.46883 * 55.00247 * 3 2 1 5 5 C 1.53000 * 109.47138 * 295.00179 * 3 2 1 6 6 C 1.53002 * 109.46970 * 299.99938 * 5 3 2 7 7 C 1.52997 * 109.47133 * 299.99771 * 6 5 3 8 8 C 1.53000 * 109.47006 * 60.00251 * 7 6 5 9 9 C 1.52994 * 109.47085 * 300.00020 * 8 7 6 10 10 H 1.09005 * 109.47345 * 299.99857 * 9 8 7 11 11 C 1.53000 * 109.47085 * 180.02562 * 9 8 7 12 12 N 1.46905 * 109.47234 * 64.99829 * 11 9 8 13 13 C 1.46902 * 110.99800 * 179.97438 * 12 11 9 14 14 C 1.50706 * 109.46577 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.72326 * 14 13 12 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 H 1.09003 * 109.47029 * 299.99986 * 1 2 3 23 23 H 1.09003 * 109.47642 * 60.00000 * 1 2 3 24 24 H 1.09002 * 109.46834 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47573 * 240.00784 * 2 1 3 26 26 H 1.09003 * 109.47642 * 119.99999 * 2 1 3 27 27 H 1.09003 * 109.47135 * 59.99482 * 5 3 2 28 28 H 1.08997 * 109.47054 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47213 * 60.00121 * 6 5 3 30 30 H 1.09002 * 109.46808 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.47047 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47356 * 300.00262 * 7 6 5 33 33 H 1.09003 * 109.47125 * 179.97438 * 8 7 6 34 34 H 1.09010 * 109.47351 * 59.99992 * 8 7 6 35 35 H 1.08993 * 109.47319 * 304.99784 * 11 9 8 36 36 H 1.09002 * 109.47089 * 184.99839 * 11 9 8 37 37 H 1.00898 * 110.99743 * 56.04920 * 12 11 9 38 38 H 1.09000 * 109.47263 * 60.00269 * 13 12 11 39 39 H 1.09001 * 109.47582 * 299.99548 * 13 12 11 40 40 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.2452 1.3700 -2.4890 7 6 3.7700 1.3720 -2.3633 8 6 4.1748 0.6880 -1.0560 9 6 3.5647 1.4445 0.1256 10 1 3.9280 2.4722 0.1257 11 6 3.9701 0.7608 1.4330 12 7 5.4243 0.8686 1.6116 13 6 5.8506 0.2221 2.8599 14 6 7.3446 0.3533 3.0086 15 1 7.9202 0.8617 2.2493 16 6 7.9772 -0.1812 4.1109 17 7 9.2809 -0.0672 4.2404 18 14 6.9827 -1.0686 5.4197 19 1 6.8939 -2.5116 5.0805 20 1 7.6468 -0.9100 6.7383 21 1 5.6166 -0.4894 5.4807 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.5488 2.1252 -1.3969 28 1 1.9980 3.1544 -1.3071 29 1 1.8819 0.3424 -2.4890 30 1 1.9564 1.8571 -3.4204 31 1 4.2046 0.8326 -3.2049 32 1 4.1333 2.3996 -2.3633 33 1 5.2612 0.6889 -0.9666 34 1 3.8115 -0.3398 -1.0559 35 1 3.6855 -0.2907 1.3966 36 1 3.4645 1.2453 2.2683 37 1 5.7215 1.8324 1.5840 38 1 5.5790 -0.8332 2.8338 39 1 5.3582 0.7033 3.7049 40 1 9.7261 -0.4436 5.0158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401621972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:32 Heat of formation + Delta-G solvation = -56.243025 kcal Electronic energy + Delta-G solvation = -16138.292343 eV Core-core repulsion = 13757.428829 eV Total energy + Delta-G solvation = -2380.863514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56867 -37.00705 -34.65515 -34.08722 -32.32804 -30.15634 -29.05439 -25.51219 -24.59549 -23.05269 -22.73832 -21.90705 -19.13072 -18.87803 -16.98742 -16.40675 -16.12921 -16.09539 -15.33293 -15.09291 -15.03206 -14.41097 -14.11548 -13.79889 -13.62603 -13.52811 -13.03779 -12.82549 -12.69246 -12.48800 -12.37244 -12.17189 -11.92498 -11.87649 -11.81301 -11.55229 -11.27998 -10.89404 -10.82937 -10.72121 -10.63985 -9.10572 -8.31961 -6.36437 1.33045 1.34425 1.45667 2.32255 3.01940 3.48397 3.74012 3.86924 4.02251 4.23292 4.28211 4.40787 4.46561 4.54405 4.60424 4.64578 4.73679 4.81289 4.83756 4.87995 4.90327 4.97393 4.99639 5.06546 5.20891 5.23599 5.25708 5.35323 5.37238 5.45650 5.48577 5.51094 5.58275 5.68784 5.75636 5.96242 6.55528 6.65575 6.76410 7.28772 8.84881 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039289 B = 0.005784 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.488449 B = 4839.914947 C = 5332.347481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.077 4.077 4 H 0.065 0.935 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.104 4.104 9 C -0.070 4.070 10 H 0.061 0.939 11 C 0.062 3.938 12 N -0.685 5.685 13 C 0.175 3.825 14 C -0.528 4.528 15 H 0.037 0.963 16 C 0.008 3.992 17 N -0.947 5.947 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.253 1.253 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.018 0.982 37 H 0.334 0.666 38 H 0.021 0.979 39 H -0.016 1.016 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.878 2.241 -10.905 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.096 4.096 4 H 0.083 0.917 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.142 4.142 9 C -0.089 4.089 10 H 0.079 0.921 11 C -0.067 4.067 12 N -0.315 5.315 13 C 0.046 3.954 14 C -0.567 4.567 15 H 0.055 0.945 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.177 1.177 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.151 0.849 38 H 0.039 0.961 39 H 0.001 0.999 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.599 1.642 -11.185 22.626 hybrid contribution 0.200 0.240 1.504 1.536 sum -19.400 1.882 -9.681 21.763 Atomic orbital electron populations 1.21790 0.94958 1.01715 1.02088 1.21711 0.96486 0.96265 1.01814 1.21111 0.93341 0.96688 0.98423 0.91654 1.21549 1.00817 0.98760 0.93547 1.21555 0.94615 1.01009 0.98196 1.21531 0.96660 1.00447 0.96788 1.21427 0.99914 0.98889 0.93950 1.21083 0.95615 0.98751 0.93478 0.92054 1.22128 0.87525 1.00454 0.96630 1.60386 1.12599 1.21066 1.37497 1.19733 0.93870 0.94478 0.87295 1.21349 0.92459 1.36488 1.06375 0.94454 1.25885 0.95910 0.96673 1.00471 1.70055 1.10292 1.47484 1.30915 0.85652 0.79449 0.79422 0.78010 1.19012 1.20394 1.17700 0.93005 0.91618 0.92697 0.91335 0.93245 0.90553 0.92256 0.91583 0.91183 0.91996 0.92486 0.93370 0.92512 0.91767 0.96413 0.84916 0.96091 0.99881 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.13 -2.55 4.48 30.60 0.14 -2.42 16 3 C -0.08 -1.62 2.19 -10.79 -0.02 -1.64 16 4 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.11 -1.90 5.21 30.60 0.16 -1.74 16 6 C -0.12 -2.01 5.65 30.59 0.17 -1.84 16 7 C -0.12 -2.49 5.92 30.59 0.18 -2.31 16 8 C -0.10 -2.81 4.82 30.59 0.15 -2.66 16 9 C -0.07 -1.88 2.10 -10.80 -0.02 -1.90 16 10 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 11 C 0.06 2.06 4.58 86.30 0.40 2.45 16 12 N -0.69 -28.93 5.95 -517.91 -3.08 -32.01 16 13 C 0.17 8.68 4.51 85.56 0.39 9.07 16 14 C -0.53 -31.54 9.87 25.60 0.25 -31.29 16 15 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 16 C 0.01 0.48 5.47 84.66 0.46 0.95 16 17 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 18 Si 0.95 45.02 27.47 68.60 1.88 46.90 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 22 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.92 6.57 -2.39 -0.02 0.91 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.40 4.83 -2.39 -0.01 1.39 16 26 H 0.05 1.15 6.29 -2.39 -0.02 1.14 16 27 H 0.08 1.11 6.56 -2.39 -0.02 1.09 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.13 6.32 -2.39 -0.02 1.11 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.57 7.75 -2.39 -0.02 1.55 16 34 H 0.06 1.53 6.55 -2.38 -0.02 1.52 16 35 H 0.06 2.16 6.60 -2.39 -0.02 2.15 16 36 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.33 13.92 8.72 -89.70 -0.78 13.14 16 38 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 39 H -0.02 -0.81 7.20 -2.39 -0.02 -0.82 16 40 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -64.89 297.19 2.20 -62.69 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.16 Total: 17.36 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 2.94 Total: -35.04 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -2.78 Total: -91.90 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -64.89 2.20 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401621972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.443 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds