Wall clock time and date at job start Mon Mar 30 2020 03:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47074 * 2 1 4 4 H 1.09001 * 110.06291 * 301.02844 * 3 2 1 5 5 C 1.53989 * 109.91392 * 179.83013 * 3 2 1 6 6 H 1.09009 * 110.30987 * 120.50613 * 5 3 2 7 7 C 1.53000 * 110.39722 * 358.38008 * 5 3 2 8 8 C 1.54589 * 105.14004 * 239.41755 * 5 3 2 9 9 C 1.54940 * 102.92289 * 338.04498 * 8 5 3 10 10 N 1.47898 * 109.91770 * 62.23978 * 3 2 1 11 11 C 1.46902 * 110.99721 * 265.19760 * 10 3 2 12 12 H 1.08994 * 109.47186 * 62.66585 * 11 10 3 13 13 C 1.52996 * 109.47138 * 302.66140 * 11 10 3 14 14 C 1.52996 * 109.46834 * 182.66315 * 11 10 3 15 15 C 1.50700 * 109.47412 * 294.67785 * 14 11 10 16 16 H 1.07995 * 119.99708 * 354.99907 * 15 14 11 17 17 C 1.37871 * 120.00050 * 174.99772 * 15 14 11 18 18 N 1.31515 * 120.00323 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47124 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47123 * 120.00372 * 19 17 15 22 22 H 1.48502 * 109.47283 * 240.00080 * 19 17 15 23 23 H 1.09005 * 109.46885 * 52.95395 * 1 2 3 24 24 H 1.08998 * 109.47318 * 172.95512 * 1 2 3 25 25 H 1.09003 * 109.46946 * 292.96051 * 1 2 3 26 26 H 1.09000 * 109.47404 * 239.99912 * 2 1 3 27 27 H 1.08997 * 109.47049 * 119.99418 * 2 1 3 28 28 H 1.09004 * 109.47043 * 302.78342 * 7 5 3 29 29 H 1.09001 * 109.47225 * 62.77901 * 7 5 3 30 30 H 1.09003 * 109.47077 * 182.78122 * 7 5 3 31 31 H 1.09006 * 110.73019 * 219.68492 * 8 5 3 32 32 H 1.09008 * 110.72598 * 96.40015 * 8 5 3 33 33 H 1.08997 * 110.66927 * 278.98016 * 9 8 5 34 34 H 1.08998 * 110.66627 * 155.84078 * 9 8 5 35 35 H 1.09000 * 109.47525 * 305.67224 * 13 11 10 36 36 H 1.09003 * 109.47589 * 65.66835 * 13 11 10 37 37 H 1.08996 * 109.47504 * 185.67191 * 13 11 10 38 38 H 1.09002 * 109.47362 * 174.67724 * 14 11 10 39 39 H 1.09009 * 109.47401 * 54.68304 * 14 11 10 40 40 H 0.97003 * 120.00298 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6671 1.9710 -0.8774 5 6 3.5798 1.4545 0.0043 6 1 3.9566 1.9755 -0.8760 7 6 4.1240 0.0252 0.0478 8 6 3.9741 2.2181 1.2893 9 6 2.7052 3.0510 1.6006 10 7 1.5973 2.1335 1.2305 11 6 0.3527 2.8782 0.9972 12 1 -0.4422 2.1824 0.7289 13 6 0.5622 3.8774 -0.1423 14 6 -0.0371 3.6314 2.2706 15 6 -0.3703 2.6420 3.3575 16 1 -0.3886 1.5847 3.1380 17 6 -0.6516 3.0866 4.6318 18 7 -0.6297 4.3741 4.8990 19 14 -1.0639 1.8601 5.9791 20 1 -1.0211 0.4830 5.4250 21 1 -0.0737 1.9816 7.0791 22 1 -2.4242 2.1406 6.5046 23 1 -0.3633 0.6192 -0.8203 24 1 -0.3634 -1.0199 -0.1260 25 1 -0.3633 0.4009 0.9463 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.7306 -0.4868 0.9260 29 1 3.8167 -0.5081 -0.8518 30 1 5.2125 0.0523 0.1001 31 1 4.8277 2.8702 1.1041 32 1 4.1877 1.5226 2.1011 33 1 2.6779 3.9532 0.9897 34 1 2.6597 3.3011 2.6605 35 1 1.4220 4.5088 0.0815 36 1 0.7409 3.3365 -1.0717 37 1 -0.3270 4.4987 -0.2488 38 1 -0.9065 4.2578 2.0706 39 1 0.7955 4.2574 2.5919 40 1 -0.8280 4.6869 5.7955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695785706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:42 Heat of formation + Delta-G solvation = -8.852826 kcal Electronic energy + Delta-G solvation = -16989.559834 eV Core-core repulsion = 14610.751313 eV Total energy + Delta-G solvation = -2378.808521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52925 -34.92513 -32.79570 -32.38223 -29.91556 -27.87698 -27.12375 -25.19706 -23.24800 -22.76588 -21.03241 -18.83661 -18.37876 -16.16000 -16.02637 -14.65037 -14.40768 -14.30962 -14.05535 -13.42747 -13.10472 -12.77948 -12.36761 -12.03515 -11.95739 -11.64605 -11.51610 -11.27531 -11.14456 -10.95495 -10.84603 -10.59418 -10.39182 -10.35126 -10.16371 -10.08099 -9.84845 -9.74563 -9.01653 -8.88893 -8.23245 -7.42522 -5.85962 -3.83492 3.39740 3.47266 3.52992 4.58669 4.68659 4.95057 5.06172 5.19283 5.51074 5.53438 5.60548 5.66118 5.72235 5.76158 5.91602 5.95079 5.97868 6.00040 6.07316 6.11271 6.20832 6.24532 6.33923 6.42751 6.48969 6.51699 6.55731 6.75411 6.79613 6.82250 6.91558 7.09004 7.58549 7.75352 7.90783 8.08803 8.17651 8.61493 9.22701 9.78110 11.26018 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.008717 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.351300 B = 3211.301072 C = 3308.433643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C 0.057 3.943 4 H 0.050 0.950 5 C -0.099 4.099 6 H 0.063 0.937 7 C -0.140 4.140 8 C -0.120 4.120 9 C 0.037 3.963 10 N -0.479 5.479 11 C 0.070 3.930 12 H 0.079 0.921 13 C -0.189 4.189 14 C 0.028 3.972 15 C -0.486 4.486 16 H 0.060 0.940 17 C 0.050 3.950 18 N -0.904 5.904 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.288 1.288 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.013 0.987 39 H 0.022 0.978 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 -5.687 -10.512 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.052 4.052 4 H 0.068 0.932 5 C -0.118 4.118 6 H 0.082 0.918 7 C -0.198 4.198 8 C -0.158 4.158 9 C -0.091 4.091 10 N -0.202 5.202 11 C -0.038 4.038 12 H 0.097 0.903 13 C -0.247 4.247 14 C -0.009 4.009 15 C -0.525 4.525 16 H 0.078 0.922 17 C -0.149 4.149 18 N -0.545 5.545 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.215 1.215 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.153 -5.952 -9.949 13.623 hybrid contribution -0.122 0.136 0.143 0.232 sum 7.031 -5.816 -9.806 13.395 Atomic orbital electron populations 1.21915 0.96280 1.00183 1.02904 1.21554 0.95773 0.95809 1.00890 1.22575 0.93211 0.95746 0.93671 0.93206 1.21980 0.95391 0.96420 0.97991 0.91816 1.21908 0.99679 0.96188 1.01993 1.22585 0.97433 0.98638 0.97129 1.23189 0.89618 0.94168 1.02094 1.64876 1.02301 1.25657 1.27389 1.22191 0.91699 0.93934 0.95967 0.90345 1.22572 1.01863 1.00736 0.99546 1.19205 0.96350 0.95042 0.90271 1.21196 1.44144 0.93504 0.93646 0.92155 1.24998 0.96340 0.94898 0.98671 1.69977 1.51046 1.12978 1.20522 0.86598 0.77613 0.81898 0.82253 1.19759 1.21380 1.21468 0.93822 0.93983 0.90435 0.92969 0.91250 0.91769 0.92902 0.93550 0.92186 0.90987 0.94182 0.89369 0.92829 0.93880 0.92607 0.96921 0.95996 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.49 37.16 0.32 -2.09 16 2 C -0.10 -1.51 4.47 -26.73 -0.12 -1.63 16 3 C 0.06 0.89 2.42 -66.64 -0.16 0.73 16 4 H 0.05 0.79 5.43 -51.93 -0.28 0.51 16 5 C -0.10 -1.36 3.58 -89.27 -0.32 -1.67 16 6 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 7 C -0.14 -1.67 7.92 37.16 0.29 -1.38 16 8 C -0.12 -1.78 6.61 -24.87 -0.16 -1.95 16 9 C 0.04 0.68 5.25 -1.90 -0.01 0.67 16 10 N -0.48 -9.15 4.45 -214.68 -0.96 -10.10 16 11 C 0.07 1.44 2.02 -67.72 -0.14 1.31 16 12 H 0.08 1.64 5.27 -51.93 -0.27 1.36 16 13 C -0.19 -3.33 8.55 37.16 0.32 -3.01 16 14 C 0.03 0.73 4.30 -27.88 -0.12 0.61 16 15 C -0.49 -13.64 8.84 -34.44 -0.30 -13.94 16 16 H 0.06 1.69 7.75 -52.49 -0.41 1.29 16 17 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 18 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 19 Si 0.89 22.23 29.54 -169.99 -5.02 17.20 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H 0.04 0.64 8.00 -51.93 -0.42 0.23 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.43 6.42 -51.93 -0.33 1.10 16 26 H 0.05 0.66 6.88 -51.93 -0.36 0.30 16 27 H 0.07 1.08 6.64 -51.93 -0.34 0.74 16 28 H 0.06 0.82 6.62 -51.93 -0.34 0.48 16 29 H 0.05 0.57 6.91 -51.93 -0.36 0.21 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.10 7.87 -51.92 -0.41 0.69 16 33 H 0.04 0.72 5.62 -51.93 -0.29 0.43 16 34 H 0.09 1.86 7.54 -51.93 -0.39 1.47 16 35 H 0.05 0.94 5.83 -51.93 -0.30 0.64 16 36 H 0.04 0.68 6.13 -51.93 -0.32 0.36 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.59 6.67 -51.92 -0.35 0.25 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 293.21 15.07 4.42 4.42 Total: -1.00 -29.30 293.21 -8.17 -37.48 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.85 Total: -1.34 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -0.51 Total: -21.01 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.22 Total: -36.75 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.30 -8.17 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.623 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds