Wall clock time and date at job start Mon Mar 30 2020 03:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47074 * 2 1 4 4 H 1.09001 * 110.06291 * 301.02844 * 3 2 1 5 5 C 1.53989 * 109.91392 * 179.83013 * 3 2 1 6 6 H 1.09009 * 110.30987 * 120.50613 * 5 3 2 7 7 C 1.53000 * 110.39722 * 358.38008 * 5 3 2 8 8 C 1.54589 * 105.14004 * 239.41755 * 5 3 2 9 9 C 1.54940 * 102.92289 * 338.04498 * 8 5 3 10 10 N 1.47898 * 109.91770 * 62.23978 * 3 2 1 11 11 C 1.46902 * 110.99721 * 265.19760 * 10 3 2 12 12 H 1.08994 * 109.47186 * 62.66585 * 11 10 3 13 13 C 1.52996 * 109.47138 * 302.66140 * 11 10 3 14 14 C 1.52996 * 109.46834 * 182.66315 * 11 10 3 15 15 C 1.50700 * 109.47412 * 294.67785 * 14 11 10 16 16 H 1.07995 * 119.99708 * 354.99907 * 15 14 11 17 17 C 1.37871 * 120.00050 * 174.99772 * 15 14 11 18 18 N 1.31515 * 120.00323 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47124 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47123 * 120.00372 * 19 17 15 22 22 H 1.48502 * 109.47283 * 240.00080 * 19 17 15 23 23 H 1.09005 * 109.46885 * 52.95395 * 1 2 3 24 24 H 1.08998 * 109.47318 * 172.95512 * 1 2 3 25 25 H 1.09003 * 109.46946 * 292.96051 * 1 2 3 26 26 H 1.09000 * 109.47404 * 239.99912 * 2 1 3 27 27 H 1.08997 * 109.47049 * 119.99418 * 2 1 3 28 28 H 1.09004 * 109.47043 * 302.78342 * 7 5 3 29 29 H 1.09001 * 109.47225 * 62.77901 * 7 5 3 30 30 H 1.09003 * 109.47077 * 182.78122 * 7 5 3 31 31 H 1.09006 * 110.73019 * 219.68492 * 8 5 3 32 32 H 1.09008 * 110.72598 * 96.40015 * 8 5 3 33 33 H 1.08997 * 110.66927 * 278.98016 * 9 8 5 34 34 H 1.08998 * 110.66627 * 155.84078 * 9 8 5 35 35 H 1.09000 * 109.47525 * 305.67224 * 13 11 10 36 36 H 1.09003 * 109.47589 * 65.66835 * 13 11 10 37 37 H 1.08996 * 109.47504 * 185.67191 * 13 11 10 38 38 H 1.09002 * 109.47362 * 174.67724 * 14 11 10 39 39 H 1.09009 * 109.47401 * 54.68304 * 14 11 10 40 40 H 0.97003 * 120.00298 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6671 1.9710 -0.8774 5 6 3.5798 1.4545 0.0043 6 1 3.9566 1.9755 -0.8760 7 6 4.1240 0.0252 0.0478 8 6 3.9741 2.2181 1.2893 9 6 2.7052 3.0510 1.6006 10 7 1.5973 2.1335 1.2305 11 6 0.3527 2.8782 0.9972 12 1 -0.4422 2.1824 0.7289 13 6 0.5622 3.8774 -0.1423 14 6 -0.0371 3.6314 2.2706 15 6 -0.3703 2.6420 3.3575 16 1 -0.3886 1.5847 3.1380 17 6 -0.6516 3.0866 4.6318 18 7 -0.6297 4.3741 4.8990 19 14 -1.0639 1.8601 5.9791 20 1 -1.0211 0.4830 5.4250 21 1 -0.0737 1.9816 7.0791 22 1 -2.4242 2.1406 6.5046 23 1 -0.3633 0.6192 -0.8203 24 1 -0.3634 -1.0199 -0.1260 25 1 -0.3633 0.4009 0.9463 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.7306 -0.4868 0.9260 29 1 3.8167 -0.5081 -0.8518 30 1 5.2125 0.0523 0.1001 31 1 4.8277 2.8702 1.1041 32 1 4.1877 1.5226 2.1011 33 1 2.6779 3.9532 0.9897 34 1 2.6597 3.3011 2.6605 35 1 1.4220 4.5088 0.0815 36 1 0.7409 3.3365 -1.0717 37 1 -0.3270 4.4987 -0.2488 38 1 -0.9065 4.2578 2.0706 39 1 0.7955 4.2574 2.5919 40 1 -0.8280 4.6869 5.7955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695785706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:42 Heat of formation + Delta-G solvation = -26.169387 kcal Electronic energy + Delta-G solvation = -16990.310736 eV Core-core repulsion = 14610.751313 eV Total energy + Delta-G solvation = -2379.559423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88586 -36.48711 -34.44962 -34.02332 -31.35417 -29.53616 -28.68120 -26.48038 -24.91357 -24.39013 -22.36155 -20.34474 -19.67320 -18.34850 -17.44431 -16.43968 -15.98057 -15.66830 -15.39511 -14.71270 -14.48350 -14.25285 -13.91123 -13.63670 -13.38107 -13.31986 -13.08797 -12.73473 -12.57551 -12.41098 -12.37538 -12.28266 -12.08485 -11.71701 -11.64523 -11.41093 -11.16511 -11.06748 -11.05650 -10.71685 -10.47805 -8.88858 -8.10156 -6.14615 1.39325 1.40402 1.53631 2.46588 3.19922 3.33976 3.76802 3.87216 4.04975 4.20296 4.35283 4.43399 4.47569 4.50879 4.53296 4.66236 4.70387 4.81150 4.86939 4.90427 5.02978 5.04198 5.11970 5.15674 5.24369 5.27060 5.27774 5.33939 5.41462 5.43693 5.50845 5.60484 5.68380 5.75466 5.91945 6.34867 6.40161 6.61630 6.99398 7.51033 9.02090 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.008717 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.351300 B = 3211.301072 C = 3308.433643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C 0.054 3.946 4 H 0.055 0.945 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.136 4.136 8 C -0.112 4.112 9 C 0.035 3.965 10 N -0.500 5.500 11 C 0.080 3.920 12 H 0.075 0.925 13 C -0.179 4.179 14 C 0.036 3.964 15 C -0.493 4.493 16 H 0.056 0.944 17 C -0.006 4.006 18 N -0.940 5.940 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.282 1.282 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.053 0.947 38 H -0.015 1.015 39 H -0.004 1.004 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.409 -7.427 -12.096 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.054 4.054 4 H 0.073 0.927 5 C -0.112 4.112 6 H 0.101 0.899 7 C -0.193 4.193 8 C -0.150 4.150 9 C -0.093 4.093 10 N -0.223 5.223 11 C -0.029 4.029 12 H 0.093 0.907 13 C -0.238 4.238 14 C -0.002 4.002 15 C -0.532 4.532 16 H 0.074 0.926 17 C -0.201 4.201 18 N -0.583 5.583 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.208 1.208 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.003 0.997 39 H 0.015 0.985 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.256 -7.704 -11.544 16.149 hybrid contribution -0.475 0.697 0.629 1.052 sum 7.781 -7.007 -10.915 15.125 Atomic orbital electron populations 1.21858 0.97069 1.01063 1.01006 1.21567 0.94998 0.95268 1.01817 1.22701 0.94907 0.95819 0.91952 0.92694 1.21995 0.93683 0.97750 0.97753 0.89862 1.21866 1.00562 0.94701 1.02191 1.22545 0.96247 0.98424 0.97781 1.23104 0.91537 0.95060 0.99580 1.64765 1.01874 1.25715 1.29978 1.21879 0.92718 0.94106 0.94203 0.90739 1.22448 1.01764 1.00145 0.99426 1.19053 0.94155 0.94433 0.92524 1.21474 1.43494 0.93654 0.94552 0.92573 1.25839 0.96401 0.96676 1.01227 1.70103 1.52190 1.14856 1.21140 0.85545 0.77483 0.79734 0.79158 1.18959 1.20978 1.20778 0.93220 0.92303 0.94180 0.89883 0.92326 0.93077 0.91242 0.92035 0.89968 0.91709 0.93929 0.93594 0.92908 0.91157 0.92807 0.99677 0.98538 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 8.49 71.98 0.61 -3.87 16 2 C -0.10 -2.65 4.47 30.60 0.14 -2.52 16 3 C 0.05 1.58 2.42 45.06 0.11 1.69 16 4 H 0.06 1.56 5.43 -2.39 -0.01 1.55 16 5 C -0.09 -2.25 3.58 -9.92 -0.04 -2.28 16 6 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 7 C -0.14 -2.74 7.92 71.98 0.57 -2.17 16 8 C -0.11 -3.15 6.61 31.80 0.21 -2.94 16 9 C 0.04 1.30 5.25 86.65 0.45 1.75 16 10 N -0.50 -19.05 4.45 -833.11 -3.71 -22.76 16 11 C 0.08 3.31 2.02 44.91 0.09 3.40 16 12 H 0.07 3.15 5.27 -2.39 -0.01 3.14 16 13 C -0.18 -6.20 8.55 71.98 0.62 -5.59 16 14 C 0.04 1.90 4.30 29.85 0.13 2.03 16 15 C -0.49 -28.57 8.84 25.60 0.23 -28.35 16 16 H 0.06 3.24 7.75 -2.91 -0.02 3.22 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -58.73 13.29 21.45 0.28 -58.44 16 19 Si 0.95 46.43 29.54 68.60 2.03 48.46 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 H 0.05 1.37 8.00 -2.38 -0.02 1.35 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.47 6.42 -2.39 -0.02 1.45 16 26 H 0.08 1.75 6.88 -2.39 -0.02 1.73 16 27 H 0.06 1.71 6.64 -2.39 -0.02 1.70 16 28 H 0.05 1.17 6.62 -2.38 -0.02 1.16 16 29 H 0.07 1.18 6.91 -2.39 -0.02 1.16 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 1.90 7.87 -2.38 -0.02 1.89 16 33 H 0.04 1.53 5.62 -2.39 -0.01 1.52 16 34 H 0.05 2.05 7.54 -2.39 -0.02 2.03 16 35 H 0.05 1.82 5.83 -2.39 -0.01 1.81 16 36 H 0.07 2.05 6.13 -2.39 -0.01 2.03 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.00 -0.22 6.67 -2.38 -0.02 -0.23 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -64.80 293.21 3.17 -61.63 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.99 Total: 9.82 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 3.58 Total: -38.71 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -3.42 Total: -81.20 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -64.80 3.17 -61.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.458 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds