Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47483 * 2 1 4 4 H 1.08994 * 109.90902 * 303.80614 * 3 2 1 5 5 C 1.53991 * 109.91972 * 182.49397 * 3 2 1 6 6 C 1.54590 * 105.14343 * 239.42511 * 5 3 2 7 7 H 1.09008 * 110.87771 * 96.46993 * 6 5 3 8 8 C 1.52995 * 110.72855 * 219.68752 * 6 5 3 9 9 C 1.54943 * 102.92004 * 338.04653 * 6 5 3 10 10 N 1.47904 * 109.91403 * 64.90499 * 3 2 1 11 11 C 1.46901 * 111.00193 * 265.19867 * 10 3 2 12 12 H 1.08996 * 109.46866 * 27.93533 * 11 10 3 13 13 C 1.52996 * 109.47140 * 147.93850 * 11 10 3 14 14 C 1.53006 * 109.46796 * 267.93528 * 11 10 3 15 15 C 1.50696 * 109.46852 * 67.23563 * 14 11 10 16 16 H 1.07999 * 120.00680 * 3.44116 * 15 14 11 17 17 C 1.37880 * 119.99723 * 183.44394 * 15 14 11 18 18 N 1.31511 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47360 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47096 * 119.99860 * 19 17 15 22 22 H 1.48504 * 109.46721 * 239.99864 * 19 17 15 23 23 H 1.08996 * 109.47309 * 174.79245 * 1 2 3 24 24 H 1.08998 * 109.47131 * 294.79850 * 1 2 3 25 25 H 1.08999 * 109.47177 * 54.79591 * 1 2 3 26 26 H 1.09005 * 109.46721 * 120.00272 * 2 1 3 27 27 H 1.09004 * 109.47085 * 240.00160 * 2 1 3 28 28 H 1.09003 * 110.30563 * 358.34085 * 5 3 2 29 29 H 1.08995 * 110.30925 * 120.50433 * 5 3 2 30 30 H 1.09001 * 109.47660 * 174.95520 * 8 6 5 31 31 H 1.09005 * 109.46798 * 294.95053 * 8 6 5 32 32 H 1.09002 * 109.47190 * 54.95092 * 8 6 5 33 33 H 1.09003 * 110.66121 * 278.97504 * 9 6 5 34 34 H 1.09003 * 110.66914 * 155.85443 * 9 6 5 35 35 H 1.08999 * 109.47373 * 64.99367 * 13 11 10 36 36 H 1.08997 * 109.47169 * 184.99864 * 13 11 10 37 37 H 1.09007 * 109.47023 * 304.99641 * 13 11 10 38 38 H 1.09000 * 109.46550 * 187.23523 * 14 11 10 39 39 H 1.08991 * 109.47042 * 307.23111 * 14 11 10 40 40 H 0.96996 * 120.00352 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6263 1.9825 -0.8515 5 6 3.5787 1.4549 -0.0630 6 6 4.0292 2.1984 1.2153 7 1 4.2798 1.4926 2.0073 8 6 5.2150 3.1181 0.9172 9 6 2.7754 3.0259 1.5948 10 7 1.6520 2.1140 1.2593 11 6 0.3987 2.8619 1.0926 12 1 -0.2036 2.3928 0.3147 13 6 -0.3774 2.8570 2.4111 14 6 0.7150 4.3045 0.6924 15 6 1.3202 4.3217 -0.6875 16 1 1.4137 3.4031 -1.2478 17 6 1.7546 5.5102 -1.2350 18 7 1.6404 6.6289 -0.5530 19 14 2.5042 5.5317 -2.9459 20 1 2.5183 4.1531 -3.4975 21 1 1.6963 6.4105 -3.8292 22 1 3.8943 6.0486 -2.8707 23 1 -0.3634 -1.0234 -0.0933 24 1 -0.3633 0.4310 0.9329 25 1 -0.3633 0.5924 -0.8397 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.9654 0.4358 -0.0641 29 1 3.9166 1.9895 -0.9507 30 1 5.4583 3.6975 1.8078 31 1 6.0772 2.5171 0.6281 32 1 4.9544 3.7948 0.1034 33 1 2.7217 3.9376 0.9998 34 1 2.7765 3.2596 2.6595 35 1 0.1865 3.4039 3.1667 36 1 -1.3462 3.3345 2.2643 37 1 -0.5255 1.8288 2.7417 38 1 -0.2034 4.8915 0.6938 39 1 1.4208 4.7324 1.4042 40 1 1.9457 7.4651 -0.9382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -24.539914 kcal Electronic energy + Delta-G solvation = -17275.165635 eV Core-core repulsion = 14895.676871 eV Total energy + Delta-G solvation = -2379.488764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75391 -36.15282 -34.76278 -34.15117 -31.00779 -29.46586 -29.03558 -26.45618 -25.01116 -24.13897 -21.48755 -20.89928 -20.26339 -18.40615 -16.68744 -16.58463 -16.35468 -15.75310 -14.85348 -14.58210 -14.36253 -14.19845 -13.94595 -13.65692 -13.41219 -13.24242 -12.98424 -12.95499 -12.71926 -12.50007 -12.26023 -12.19541 -11.99856 -11.74503 -11.60889 -11.43055 -11.13041 -11.08074 -10.98256 -10.69580 -10.53814 -8.87760 -8.17674 -6.24429 1.32882 1.35777 1.45670 2.38146 3.14930 3.37269 3.85063 3.93459 4.17617 4.29223 4.36860 4.49270 4.58360 4.67579 4.75717 4.77961 4.82736 4.87084 4.90774 4.96769 5.07051 5.11837 5.17931 5.19183 5.25476 5.28163 5.30935 5.38472 5.42135 5.48976 5.56434 5.64506 5.69359 5.76894 5.86584 6.25986 6.36612 6.53935 6.90210 7.42518 8.93828 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.011926 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.090952 B = 2347.220541 C = 2636.743931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C 0.052 3.948 4 H 0.045 0.955 5 C -0.114 4.114 6 C -0.086 4.086 7 H 0.086 0.914 8 C -0.137 4.137 9 C 0.020 3.980 10 N -0.490 5.490 11 C 0.072 3.928 12 H 0.062 0.938 13 C -0.124 4.124 14 C 0.002 3.998 15 C -0.516 4.516 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.929 5.929 19 Si 0.940 3.060 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.281 1.281 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.067 0.933 38 H -0.019 1.019 39 H 0.011 0.989 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -11.814 2.197 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.057 4.057 4 H 0.063 0.937 5 C -0.152 4.152 6 C -0.105 4.105 7 H 0.104 0.896 8 C -0.194 4.194 9 C -0.108 4.108 10 N -0.213 5.213 11 C -0.036 4.036 12 H 0.081 0.919 13 C -0.182 4.182 14 C -0.036 4.036 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.188 4.188 18 N -0.570 5.570 19 Si 0.766 3.234 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.207 1.207 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.086 0.914 38 H -0.001 1.001 39 H 0.029 0.971 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.859 -12.024 2.599 12.630 hybrid contribution 0.255 1.565 -1.539 2.210 sum 3.114 -10.459 1.060 10.964 Atomic orbital electron populations 1.21784 0.96226 1.01245 1.01217 1.21475 0.95922 0.94432 1.01770 1.22672 0.95097 0.95626 0.92262 0.93711 1.22429 0.94598 1.00826 0.97363 1.21970 0.94167 0.96882 0.97514 0.89603 1.21711 0.97726 0.99058 1.00926 1.23580 0.90436 0.97201 0.99609 1.64987 1.01861 1.25517 1.28984 1.21845 0.91689 0.93404 0.96698 0.91945 1.21655 0.98548 1.01483 0.96534 1.19720 0.94833 0.93201 0.95814 1.21693 1.38639 0.93515 1.01482 0.91483 1.25727 0.96742 0.95550 1.00762 1.70093 1.48873 0.98995 1.39071 0.85754 0.78203 0.78493 0.80899 1.18615 1.20971 1.20671 0.91657 0.92732 0.94567 0.91189 0.91336 0.89596 0.93287 0.92574 0.90922 0.94990 0.91552 0.92573 0.94119 0.93094 0.91440 1.00090 0.97119 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 8.53 71.98 0.61 -3.50 16 2 C -0.10 -2.78 5.40 30.59 0.17 -2.61 16 3 C 0.05 1.84 2.08 45.06 0.09 1.93 16 4 H 0.05 1.90 4.60 -2.39 -0.01 1.89 16 5 C -0.11 -3.67 6.15 31.47 0.19 -3.48 16 6 C -0.09 -2.80 3.66 -9.59 -0.04 -2.84 16 7 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 8 C -0.14 -4.23 9.16 71.98 0.66 -3.57 16 9 C 0.02 0.78 4.85 86.65 0.42 1.20 16 10 N -0.49 -18.55 4.59 -833.09 -3.83 -22.37 16 11 C 0.07 3.00 1.52 44.92 0.07 3.07 16 12 H 0.06 2.62 5.66 -2.39 -0.01 2.60 16 13 C -0.12 -4.43 9.43 71.98 0.68 -3.75 16 14 C 0.00 0.11 3.93 29.85 0.12 0.22 16 15 C -0.52 -27.88 6.97 25.60 0.18 -27.70 16 16 H 0.07 3.55 4.73 -2.91 -0.01 3.53 16 17 C 0.01 0.56 5.46 84.66 0.46 1.02 16 18 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 19 Si 0.94 43.99 29.54 68.60 2.03 46.01 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.62 6.32 -2.39 -0.02 1.60 16 25 H 0.04 1.09 7.77 -2.39 -0.02 1.07 16 26 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.09 2.26 7.69 -2.39 -0.02 2.24 16 29 H 0.05 1.70 7.82 -2.39 -0.02 1.68 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.03 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.07 3.25 4.10 -2.39 -0.01 3.24 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.11 7.76 -2.38 -0.02 2.09 16 38 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 39 H 0.01 0.59 5.90 -2.39 -0.01 0.58 16 40 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -59.72 296.03 3.08 -56.63 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.99 Total: 15.14 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 3.62 Total: -40.02 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -3.54 Total: -77.77 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.72 3.08 -56.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.094 kcal (2) G-P(sol) polarization free energy of solvation -59.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds