Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 H 1.08998 * 109.47331 * 305.70663 * 3 2 1 5 5 N 1.46898 * 109.47098 * 65.70520 * 3 2 1 6 6 C 1.46903 * 111.00236 * 209.05911 * 5 3 2 7 7 H 1.09004 * 109.46837 * 324.77808 * 6 5 3 8 8 C 1.52996 * 109.47349 * 84.77779 * 6 5 3 9 9 C 1.53000 * 109.46999 * 204.78187 * 6 5 3 10 10 C 1.50698 * 109.47390 * 64.99615 * 9 6 5 11 11 H 1.07995 * 119.99875 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99999 * 179.97438 * 10 9 6 13 13 N 1.31510 * 119.99900 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47380 * 89.99729 * 14 12 10 16 16 H 1.48496 * 109.47115 * 209.99949 * 14 12 10 17 17 H 1.48497 * 109.47046 * 329.99784 * 14 12 10 18 18 C 1.52998 * 109.47038 * 185.70293 * 3 2 1 19 19 C 1.53784 * 113.60888 * 157.49983 * 18 3 2 20 20 C 1.53792 * 87.07903 * 220.01670 * 19 18 3 21 21 C 1.53780 * 87.07823 * 25.43432 * 20 19 18 22 22 H 1.09001 * 109.47121 * 173.89978 * 1 2 3 23 23 H 1.09007 * 109.46780 * 53.90984 * 1 2 3 24 24 H 1.08991 * 109.47080 * 293.90865 * 1 2 3 25 25 H 1.09004 * 109.46963 * 120.00232 * 2 1 3 26 26 H 1.09001 * 109.47376 * 239.99859 * 2 1 3 27 27 H 1.00903 * 111.00202 * 333.00743 * 5 3 2 28 28 H 1.08997 * 109.47270 * 64.64729 * 8 6 5 29 29 H 1.09005 * 109.47268 * 184.64870 * 8 6 5 30 30 H 1.09009 * 109.47276 * 304.64623 * 8 6 5 31 31 H 1.08999 * 109.46747 * 184.99779 * 9 6 5 32 32 H 1.08997 * 109.46878 * 304.99460 * 9 6 5 33 33 H 0.97002 * 119.99788 * 179.97438 * 13 12 10 34 34 H 1.08999 * 112.85409 * 288.80203 * 18 3 2 35 35 H 1.08997 * 113.61881 * 334.56375 * 19 18 3 36 36 H 1.09003 * 113.61417 * 105.47445 * 19 18 3 37 37 H 1.08990 * 113.61330 * 270.88423 * 20 19 18 38 38 H 1.08996 * 113.61118 * 139.97969 * 20 19 18 39 39 H 1.09005 * 113.61315 * 220.01762 * 21 20 19 40 40 H 1.09003 * 113.61580 * 89.11556 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 -0.8345 5 7 1.6660 2.0941 1.2623 6 6 1.4913 3.5408 1.0765 7 1 2.2117 3.9024 0.3427 8 6 0.0720 3.8236 0.5801 9 6 1.7178 4.2572 2.4093 10 6 3.1518 4.0805 2.8374 11 1 3.8334 3.5135 2.2208 12 6 3.5936 4.6426 4.0163 13 7 4.8449 4.4879 4.3901 14 14 2.4144 5.6226 5.0833 15 1 1.7531 4.7138 6.0539 16 1 3.1669 6.6700 5.8193 17 1 1.3859 6.2631 4.2248 18 6 3.5633 1.4448 -0.1433 19 6 4.1280 2.7648 -0.6945 20 6 5.1024 1.9107 -1.5229 21 6 4.0612 0.7822 -1.4387 22 1 -0.3633 -1.0219 -0.1092 23 1 -0.3633 0.6054 -0.8305 24 1 -0.3633 0.4165 0.9394 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 0.8342 1.6767 1.6522 28 1 -0.6456 3.5375 1.3490 29 1 -0.0321 4.8868 0.3635 30 1 -0.1175 3.2480 -0.3260 31 1 1.5018 5.3191 2.2922 32 1 1.0578 3.8335 3.1662 33 1 5.1558 4.8837 5.2194 34 1 4.0733 1.0904 0.7524 35 1 3.4158 3.3255 -1.2998 36 1 4.6190 3.3787 0.0606 37 1 6.0341 1.6847 -1.0044 38 1 5.2597 2.2850 -2.5344 39 1 4.4981 -0.2045 -1.2843 40 1 3.3306 0.8009 -2.2474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = -2.510180 kcal Electronic energy + Delta-G solvation = -16599.737620 eV Core-core repulsion = 14221.204137 eV Total energy + Delta-G solvation = -2378.533483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.14097 -36.36145 -33.85041 -32.09152 -29.48947 -27.76529 -26.54854 -25.17445 -23.10168 -22.54187 -20.17209 -19.69924 -18.81306 -16.52786 -15.56871 -15.03133 -14.74793 -14.50131 -13.88056 -13.47167 -12.92955 -12.78133 -12.40580 -12.28662 -12.12239 -12.03908 -11.65867 -11.57450 -11.48550 -11.14895 -10.80218 -10.68887 -10.55459 -10.18010 -9.98155 -9.88801 -9.58539 -9.56021 -9.39108 -8.90247 -8.35115 -7.47562 -5.83741 -3.76274 3.40724 3.47868 3.50703 4.60868 4.72447 4.92545 5.11126 5.17880 5.26061 5.31056 5.41724 5.50259 5.55057 5.70772 5.81066 5.83656 5.93144 5.95626 6.05363 6.06349 6.08979 6.17646 6.19164 6.30718 6.34932 6.42644 6.53485 6.59614 6.73165 6.73571 6.92416 7.05023 7.26260 7.42636 7.94339 8.03302 8.24429 8.81620 9.30019 9.80318 11.30285 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024226 B = 0.008876 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.528542 B = 3153.938397 C = 3813.523786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C 0.100 3.900 4 H 0.035 0.965 5 N -0.658 5.658 6 C 0.096 3.904 7 H 0.075 0.925 8 C -0.183 4.183 9 C -0.004 4.004 10 C -0.482 4.482 11 H 0.081 0.919 12 C 0.059 3.941 13 N -0.911 5.911 14 Si 0.872 3.128 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.270 1.270 18 C -0.086 4.086 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.139 4.139 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.328 0.672 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.013 0.987 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -6.900 -11.276 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.011 4.011 4 H 0.053 0.947 5 N -0.289 5.289 6 C -0.014 4.014 7 H 0.093 0.907 8 C -0.243 4.243 9 C -0.042 4.042 10 C -0.521 4.521 11 H 0.099 0.901 12 C -0.140 4.140 13 N -0.551 5.551 14 Si 0.701 3.299 15 H -0.207 1.207 16 H -0.218 1.218 17 H -0.195 1.195 18 C -0.105 4.105 19 C -0.170 4.170 20 C -0.181 4.181 21 C -0.177 4.177 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.798 -6.793 -10.907 14.096 hybrid contribution -1.467 0.618 0.273 1.615 sum -7.264 -6.174 -10.633 14.282 Atomic orbital electron populations 1.21827 0.96545 1.01177 1.01618 1.21712 0.95080 0.97316 1.02418 1.21511 0.94801 0.93072 0.91677 0.94710 1.60506 1.40521 1.03115 1.24719 1.21646 0.92686 0.87625 0.99450 0.90695 1.22621 1.00197 1.01373 1.00069 1.19605 0.98323 0.94128 0.92132 1.21079 0.93731 1.31285 1.05983 0.90097 1.25011 0.94771 0.96535 0.97693 1.69911 1.15196 1.46555 1.23487 0.86904 0.81644 0.80328 0.81024 1.20728 1.21835 1.19452 1.22478 0.94925 0.96356 0.96787 1.22902 0.98088 0.96869 0.99149 1.22814 0.97757 0.97788 0.99784 1.22966 0.98529 0.97738 0.98501 0.92968 0.93229 0.92567 0.91124 0.91831 0.85224 0.93202 0.92766 0.94090 0.96856 0.97301 0.93246 0.88485 0.91294 0.90223 0.90448 0.92409 0.92188 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.65 37.16 0.36 -1.40 16 2 C -0.13 -1.64 5.38 -26.73 -0.14 -1.79 16 3 C 0.10 1.53 1.75 -67.71 -0.12 1.41 16 4 H 0.04 0.54 6.90 -51.93 -0.36 0.18 16 5 N -0.66 -12.00 5.78 -99.74 -0.58 -12.57 16 6 C 0.10 1.86 2.32 -67.71 -0.16 1.70 16 7 H 0.07 1.52 5.76 -51.93 -0.30 1.22 16 8 C -0.18 -2.96 9.16 37.16 0.34 -2.62 16 9 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 10 C -0.48 -13.65 9.39 -34.44 -0.32 -13.97 16 11 H 0.08 2.46 7.62 -52.49 -0.40 2.06 16 12 C 0.06 1.74 5.47 -17.82 -0.10 1.64 16 13 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 14 Si 0.87 22.29 27.47 -169.99 -4.67 17.63 16 15 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.27 -6.62 6.54 56.52 0.37 -6.26 16 18 C -0.09 -1.39 3.43 -89.81 -0.31 -1.70 16 19 C -0.13 -2.21 6.16 -25.91 -0.16 -2.37 16 20 C -0.14 -2.02 8.08 -25.91 -0.21 -2.23 16 21 C -0.14 -1.84 6.58 -25.92 -0.17 -2.01 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.74 7.26 -51.93 -0.38 0.37 16 27 H 0.33 5.60 6.34 -39.29 -0.25 5.35 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.59 7.42 -51.92 -0.39 0.20 16 31 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.07 1.10 7.46 -51.93 -0.39 0.71 16 36 H 0.08 1.59 7.77 -51.93 -0.40 1.18 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -30.00 306.72 -8.31 -38.31 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.37 Total: 3.34 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.09 Total: -23.54 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.20 Total: -40.36 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.00 -8.31 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.802 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds