Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 H 1.08998 * 109.47331 * 305.70663 * 3 2 1 5 5 N 1.46898 * 109.47098 * 65.70520 * 3 2 1 6 6 C 1.46903 * 111.00236 * 209.05911 * 5 3 2 7 7 H 1.09004 * 109.46837 * 324.77808 * 6 5 3 8 8 C 1.52996 * 109.47349 * 84.77779 * 6 5 3 9 9 C 1.53000 * 109.46999 * 204.78187 * 6 5 3 10 10 C 1.50698 * 109.47390 * 64.99615 * 9 6 5 11 11 H 1.07995 * 119.99875 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99999 * 179.97438 * 10 9 6 13 13 N 1.31510 * 119.99900 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47380 * 89.99729 * 14 12 10 16 16 H 1.48496 * 109.47115 * 209.99949 * 14 12 10 17 17 H 1.48497 * 109.47046 * 329.99784 * 14 12 10 18 18 C 1.52998 * 109.47038 * 185.70293 * 3 2 1 19 19 C 1.53784 * 113.60888 * 157.49983 * 18 3 2 20 20 C 1.53792 * 87.07903 * 220.01670 * 19 18 3 21 21 C 1.53780 * 87.07823 * 25.43432 * 20 19 18 22 22 H 1.09001 * 109.47121 * 173.89978 * 1 2 3 23 23 H 1.09007 * 109.46780 * 53.90984 * 1 2 3 24 24 H 1.08991 * 109.47080 * 293.90865 * 1 2 3 25 25 H 1.09004 * 109.46963 * 120.00232 * 2 1 3 26 26 H 1.09001 * 109.47376 * 239.99859 * 2 1 3 27 27 H 1.00903 * 111.00202 * 333.00743 * 5 3 2 28 28 H 1.08997 * 109.47270 * 64.64729 * 8 6 5 29 29 H 1.09005 * 109.47268 * 184.64870 * 8 6 5 30 30 H 1.09009 * 109.47276 * 304.64623 * 8 6 5 31 31 H 1.08999 * 109.46747 * 184.99779 * 9 6 5 32 32 H 1.08997 * 109.46878 * 304.99460 * 9 6 5 33 33 H 0.97002 * 119.99788 * 179.97438 * 13 12 10 34 34 H 1.08999 * 112.85409 * 288.80203 * 18 3 2 35 35 H 1.08997 * 113.61881 * 334.56375 * 19 18 3 36 36 H 1.09003 * 113.61417 * 105.47445 * 19 18 3 37 37 H 1.08990 * 113.61330 * 270.88423 * 20 19 18 38 38 H 1.08996 * 113.61118 * 139.97969 * 20 19 18 39 39 H 1.09005 * 113.61315 * 220.01762 * 21 20 19 40 40 H 1.09003 * 113.61580 * 89.11556 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 -0.8345 5 7 1.6660 2.0941 1.2623 6 6 1.4913 3.5408 1.0765 7 1 2.2117 3.9024 0.3427 8 6 0.0720 3.8236 0.5801 9 6 1.7178 4.2572 2.4093 10 6 3.1518 4.0805 2.8374 11 1 3.8334 3.5135 2.2208 12 6 3.5936 4.6426 4.0163 13 7 4.8449 4.4879 4.3901 14 14 2.4144 5.6226 5.0833 15 1 1.7531 4.7138 6.0539 16 1 3.1669 6.6700 5.8193 17 1 1.3859 6.2631 4.2248 18 6 3.5633 1.4448 -0.1433 19 6 4.1280 2.7648 -0.6945 20 6 5.1024 1.9107 -1.5229 21 6 4.0612 0.7822 -1.4387 22 1 -0.3633 -1.0219 -0.1092 23 1 -0.3633 0.6054 -0.8305 24 1 -0.3633 0.4165 0.9394 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 0.8342 1.6767 1.6522 28 1 -0.6456 3.5375 1.3490 29 1 -0.0321 4.8868 0.3635 30 1 -0.1175 3.2480 -0.3260 31 1 1.5018 5.3191 2.2922 32 1 1.0578 3.8335 3.1662 33 1 5.1558 4.8837 5.2194 34 1 4.0733 1.0904 0.7524 35 1 3.4158 3.3255 -1.2998 36 1 4.6190 3.3787 0.0606 37 1 6.0341 1.6847 -1.0044 38 1 5.2597 2.2850 -2.5344 39 1 4.4981 -0.2045 -1.2843 40 1 3.3306 0.8009 -2.2474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = -20.802921 kcal Electronic energy + Delta-G solvation = -16600.530853 eV Core-core repulsion = 14221.204137 eV Total energy + Delta-G solvation = -2379.326716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41679 -37.77322 -35.35350 -34.06369 -30.93130 -29.49315 -27.80374 -26.41086 -24.69684 -23.98970 -21.44157 -21.25179 -20.11836 -18.73466 -16.94008 -16.49468 -16.14027 -15.86254 -15.56962 -14.76744 -14.65110 -14.07690 -13.88632 -13.84605 -13.39070 -13.33382 -13.24198 -13.01237 -12.74405 -12.54113 -12.28875 -12.10191 -11.77323 -11.67445 -11.58109 -11.42173 -11.28020 -11.21973 -10.77069 -10.73525 -10.63419 -8.87272 -8.12957 -6.10051 1.37228 1.38392 1.49335 2.44537 3.19736 3.43688 3.76212 3.91295 4.00148 4.02828 4.23813 4.33898 4.36764 4.44548 4.48111 4.61691 4.66174 4.85298 4.88356 4.96903 4.98353 5.01415 5.10567 5.11993 5.16484 5.17321 5.22206 5.27874 5.30056 5.36429 5.48059 5.54024 5.62161 5.73989 5.81692 6.47612 6.63651 6.88621 6.99838 7.49806 9.04316 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024226 B = 0.008876 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.528542 B = 3153.938397 C = 3813.523786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.104 3.896 4 H 0.044 0.956 5 N -0.681 5.681 6 C 0.100 3.900 7 H 0.060 0.940 8 C -0.172 4.172 9 C -0.003 4.003 10 C -0.479 4.479 11 H 0.041 0.959 12 C -0.008 4.008 13 N -0.960 5.960 14 Si 0.942 3.058 15 H -0.274 1.274 16 H -0.291 1.291 17 H -0.249 1.249 18 C -0.095 4.095 19 C -0.139 4.139 20 C -0.138 4.138 21 C -0.117 4.117 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.335 0.665 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.010 0.990 33 H 0.258 0.742 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -7.451 -12.842 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.005 4.005 4 H 0.062 0.938 5 N -0.313 5.313 6 C -0.010 4.010 7 H 0.079 0.921 8 C -0.231 4.231 9 C -0.041 4.041 10 C -0.517 4.517 11 H 0.060 0.940 12 C -0.202 4.202 13 N -0.604 5.604 14 Si 0.768 3.232 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.173 1.173 18 C -0.115 4.115 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.155 4.155 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.156 0.844 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.348 -7.353 -12.490 16.726 hybrid contribution -0.584 0.761 0.739 1.211 sum -8.931 -6.592 -11.751 16.165 Atomic orbital electron populations 1.21793 0.95010 1.02426 1.01532 1.21664 0.96356 0.95239 1.02655 1.21518 0.93931 0.94610 0.90478 0.93782 1.60359 1.41228 1.02735 1.26998 1.21406 0.94870 0.88100 0.96593 0.92141 1.22462 0.97351 1.02156 1.01130 1.19581 0.95044 0.94804 0.94678 1.21349 0.95602 1.29637 1.05151 0.94025 1.25937 0.96515 0.98183 0.99545 1.70089 1.17541 1.48468 1.24288 0.85775 0.79556 0.78741 0.79151 1.20010 1.21747 1.17319 1.22446 0.95633 0.96451 0.96920 1.22887 0.99169 0.96827 0.98736 1.22794 0.97159 0.97428 1.00205 1.22869 0.98096 0.97707 0.96845 0.91263 0.92447 0.93299 0.92537 0.89932 0.84445 0.92405 0.92232 0.91843 0.96771 0.97129 0.93334 0.92393 0.90357 0.95252 0.91303 0.90158 0.90848 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.65 71.98 0.69 -2.27 16 2 C -0.12 -2.86 5.38 30.59 0.16 -2.69 16 3 C 0.10 3.08 1.75 44.92 0.08 3.16 16 4 H 0.04 1.24 6.90 -2.39 -0.02 1.23 16 5 N -0.68 -24.69 5.78 -469.47 -2.72 -27.40 16 6 C 0.10 3.85 2.32 44.91 0.10 3.95 16 7 H 0.06 2.48 5.76 -2.38 -0.01 2.46 16 8 C -0.17 -5.06 9.16 71.98 0.66 -4.40 16 9 C 0.00 -0.16 3.72 29.85 0.11 -0.04 16 10 C -0.48 -28.08 9.39 25.60 0.24 -27.84 16 11 H 0.04 2.71 7.62 -2.91 -0.02 2.69 16 12 C -0.01 -0.47 5.47 84.66 0.46 -0.01 16 13 N -0.96 -62.72 13.96 21.45 0.30 -62.42 16 14 Si 0.94 46.41 27.47 68.60 1.88 48.29 16 15 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 17 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 18 C -0.10 -3.11 3.43 -10.27 -0.04 -3.15 16 19 C -0.14 -4.79 6.16 31.13 0.19 -4.60 16 20 C -0.14 -3.80 8.08 31.12 0.25 -3.55 16 21 C -0.12 -2.86 6.58 31.12 0.20 -2.65 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.05 1.03 6.68 -2.39 -0.02 1.02 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.64 7.26 -2.39 -0.02 1.63 16 27 H 0.34 11.08 6.34 -89.69 -0.57 10.51 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.06 1.59 7.42 -2.38 -0.02 1.57 16 31 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 32 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.51 7.46 -2.39 -0.02 2.49 16 36 H 0.03 1.27 7.77 -2.39 -0.02 1.25 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.10 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -67.63 306.72 2.95 -64.67 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.36 Total: 20.95 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.13 Total: -44.09 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.42 Total: -89.83 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -67.63 2.95 -64.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.871 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds