Wall clock time and date at job start Mon Mar 30 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47177 * 2 1 4 4 H 1.09004 * 109.47074 * 175.69337 * 3 2 1 5 5 N 1.46904 * 109.47100 * 295.69041 * 3 2 1 6 6 C 1.46896 * 111.00008 * 273.90838 * 5 3 2 7 7 H 1.09006 * 109.47465 * 35.86372 * 6 5 3 8 8 C 1.53008 * 109.47106 * 275.86594 * 6 5 3 9 9 C 1.53006 * 109.47335 * 155.86643 * 6 5 3 10 10 C 1.50696 * 109.46588 * 294.99738 * 9 6 5 11 11 H 1.07994 * 120.00510 * 0.02562 * 10 9 6 12 12 C 1.37882 * 119.99829 * 179.97438 * 10 9 6 13 13 N 1.31510 * 120.00075 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99645 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47080 * 90.00008 * 14 12 10 16 16 H 1.48506 * 109.47020 * 209.99756 * 14 12 10 17 17 H 1.48503 * 109.47308 * 329.99643 * 14 12 10 18 18 C 1.53000 * 109.47536 * 55.69202 * 3 2 1 19 19 C 1.53779 * 113.61753 * 157.50041 * 18 3 2 20 20 C 1.53784 * 87.07965 * 220.02003 * 19 18 3 21 21 C 1.53774 * 87.08187 * 25.42976 * 20 19 18 22 22 H 1.09006 * 109.46786 * 56.72447 * 1 2 3 23 23 H 1.09004 * 109.46915 * 176.71866 * 1 2 3 24 24 H 1.08992 * 109.47464 * 296.72480 * 1 2 3 25 25 H 1.08997 * 109.47572 * 239.99313 * 2 1 3 26 26 H 1.09007 * 109.46888 * 119.99415 * 2 1 3 27 27 H 1.00895 * 110.99728 * 37.86005 * 5 3 2 28 28 H 1.09005 * 109.46806 * 179.97438 * 8 6 5 29 29 H 1.08994 * 109.46919 * 299.99834 * 8 6 5 30 30 H 1.08997 * 109.46961 * 60.00185 * 8 6 5 31 31 H 1.09001 * 109.46972 * 175.00159 * 9 6 5 32 32 H 1.08996 * 109.46614 * 54.99780 * 9 6 5 33 33 H 0.97006 * 119.99746 * 180.02562 * 13 12 10 34 34 H 1.09011 * 112.84649 * 288.80493 * 18 3 2 35 35 H 1.08996 * 113.61089 * 334.56076 * 19 18 3 36 36 H 1.08991 * 113.61596 * 105.46912 * 19 18 3 37 37 H 1.09005 * 113.60966 * 270.88330 * 20 19 18 38 38 H 1.08993 * 113.69448 * 139.99151 * 20 19 18 39 39 H 1.09005 * 113.61691 * 220.02430 * 21 20 19 40 40 H 1.09003 * 113.61468 * 89.11932 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4434 0.0772 5 7 1.6371 2.1043 -1.2481 6 6 2.6131 1.8518 -2.3166 7 1 3.0061 0.8399 -2.2182 8 6 3.7610 2.8576 -2.2069 9 6 1.9303 2.0037 -3.6774 10 6 0.8810 0.9335 -3.8349 11 1 0.7172 0.2172 -3.0436 12 6 0.1293 0.8697 -4.9891 13 7 -0.7867 -0.0638 -5.1264 14 14 0.4122 2.1093 -6.3576 15 1 1.4400 1.5872 -7.2937 16 1 -0.8585 2.3338 -7.0927 17 1 0.8800 3.3925 -5.7744 18 6 1.4435 2.1944 1.1915 19 6 2.2629 3.4242 1.6167 20 6 1.9715 3.0177 3.0709 21 6 1.8074 1.5791 2.5530 22 1 -0.3633 0.5639 -0.8592 23 1 -0.3633 -1.0260 -0.0588 24 1 -0.3634 0.4621 0.9178 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.7118 1.8156 -1.5280 28 1 4.4854 2.6699 -2.9995 29 1 3.3680 3.8694 -2.3054 30 1 4.2474 2.7494 -1.2375 31 1 2.6725 1.9041 -4.4694 32 1 1.4607 2.9852 -3.7407 33 1 -1.3153 -0.1089 -5.9386 34 1 0.3788 2.3967 1.0743 35 1 3.3174 3.3602 1.3485 36 1 1.8087 4.3723 1.3290 37 1 1.0514 3.4464 3.4681 38 1 2.8219 3.1463 3.7405 39 1 0.9853 1.0376 3.0211 40 1 2.7374 1.0106 2.5407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:59 Heat of formation + Delta-G solvation = -6.914344 kcal Electronic energy + Delta-G solvation = -16513.180668 eV Core-core repulsion = 14134.456206 eV Total energy + Delta-G solvation = -2378.724462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.27116 -36.55888 -33.56407 -32.18313 -29.28800 -27.78026 -26.34945 -25.32891 -23.69508 -22.64957 -20.30530 -19.09036 -18.76484 -16.78639 -15.55718 -15.26461 -14.94251 -14.20468 -14.08183 -13.30989 -13.23368 -12.70733 -12.40869 -12.26501 -12.05987 -11.86853 -11.71688 -11.55870 -11.23106 -10.99574 -10.92807 -10.57028 -10.41349 -10.38409 -10.10454 -9.91108 -9.84772 -9.67289 -9.34709 -9.16285 -8.53969 -7.53778 -6.04966 -4.02814 3.31645 3.39538 3.44739 4.46120 4.68444 4.84678 4.93937 5.04276 5.25760 5.37521 5.52789 5.57445 5.64313 5.78752 5.86717 5.91511 5.93721 5.98960 6.02985 6.13012 6.17831 6.19112 6.24421 6.31398 6.46599 6.50258 6.54834 6.68838 6.75742 6.77168 6.82122 6.86784 7.23569 7.36806 7.78875 8.02889 8.36853 8.51777 8.98195 9.58316 11.07796 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.007359 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.999304 B = 3803.834641 C = 4263.615803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.150 4.150 3 C 0.098 3.902 4 H 0.066 0.934 5 N -0.678 5.678 6 C 0.096 3.904 7 H 0.033 0.967 8 C -0.137 4.137 9 C -0.017 4.017 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.902 5.902 14 Si 0.879 3.121 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.264 1.264 18 C -0.090 4.090 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.136 4.136 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.358 0.642 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 4.228 12.786 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.189 4.189 3 C -0.013 4.013 4 H 0.084 0.916 5 N -0.313 5.313 6 C -0.013 4.013 7 H 0.051 0.949 8 C -0.195 4.195 9 C -0.055 4.055 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.706 3.294 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.189 1.189 18 C -0.108 4.108 19 C -0.163 4.163 20 C -0.184 4.184 21 C -0.174 4.174 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.181 0.819 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.773 4.773 12.810 14.839 hybrid contribution -0.145 -0.491 -1.083 1.197 sum 5.628 4.282 11.727 13.694 Atomic orbital electron populations 1.21760 0.95638 1.01523 1.01832 1.22122 0.96973 0.98326 1.01453 1.21549 0.98261 0.90739 0.90760 0.91588 1.60693 1.07185 1.60753 1.02669 1.21361 0.91987 0.95566 0.92431 0.94904 1.21839 0.97788 1.00329 0.99556 1.19766 0.95936 0.97929 0.91875 1.21123 1.17590 1.13701 1.03538 0.90956 1.25002 0.94715 0.95256 0.98275 1.69917 1.22996 1.33568 1.27591 0.86791 0.77466 0.82771 0.82323 1.20491 1.21530 1.18890 1.22450 1.00012 0.95652 0.92736 1.22800 1.00187 0.98538 0.94725 1.22846 1.01157 0.97288 0.97098 1.22924 1.01318 0.96089 0.97109 0.91426 0.93361 0.93206 0.91822 0.92753 0.81877 0.93557 0.92728 0.94213 0.96723 0.95744 0.92815 0.89304 0.90704 0.91789 0.90696 0.92187 0.92019 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.28 37.16 0.34 -2.10 16 2 C -0.15 -2.39 5.51 -26.73 -0.15 -2.54 16 3 C 0.10 1.53 1.97 -67.71 -0.13 1.40 16 4 H 0.07 1.04 6.85 -51.93 -0.36 0.68 16 5 N -0.68 -12.68 6.06 -99.73 -0.60 -13.29 16 6 C 0.10 1.93 2.40 -67.71 -0.16 1.76 16 7 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 8 C -0.14 -2.35 9.39 37.16 0.35 -2.00 16 9 C -0.02 -0.41 3.65 -27.88 -0.10 -0.52 16 10 C -0.52 -14.32 8.68 -34.44 -0.30 -14.61 16 11 H 0.07 2.11 7.72 -52.49 -0.41 1.70 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 14 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 18 C -0.09 -1.22 2.50 -89.81 -0.22 -1.45 16 19 C -0.13 -1.58 7.63 -25.92 -0.20 -1.77 16 20 C -0.15 -1.58 8.08 -25.92 -0.21 -1.79 16 21 C -0.14 -1.58 6.76 -25.92 -0.18 -1.75 16 22 H 0.07 1.28 6.28 -51.93 -0.33 0.95 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.71 6.83 -51.93 -0.35 0.36 16 25 H 0.06 1.17 7.46 -51.93 -0.39 0.78 16 26 H 0.05 0.76 7.61 -51.93 -0.39 0.37 16 27 H 0.36 7.47 4.93 -39.29 -0.19 7.27 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.61 7.38 -51.93 -0.38 0.23 16 31 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 32 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.09 1.29 7.29 -51.92 -0.38 0.91 16 35 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -28.29 305.22 -8.23 -36.52 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.28 Total: 5.13 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -1.05 Total: -23.49 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.17 Total: -39.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.29 -8.23 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.608 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds