Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47177 * 2 1 4 4 H 1.09004 * 109.47074 * 175.69337 * 3 2 1 5 5 N 1.46904 * 109.47100 * 295.69041 * 3 2 1 6 6 C 1.46896 * 111.00008 * 273.90838 * 5 3 2 7 7 H 1.09006 * 109.47465 * 35.86372 * 6 5 3 8 8 C 1.53008 * 109.47106 * 275.86594 * 6 5 3 9 9 C 1.53006 * 109.47335 * 155.86643 * 6 5 3 10 10 C 1.50696 * 109.46588 * 294.99738 * 9 6 5 11 11 H 1.07994 * 120.00510 * 0.02562 * 10 9 6 12 12 C 1.37882 * 119.99829 * 179.97438 * 10 9 6 13 13 N 1.31510 * 120.00075 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99645 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47080 * 90.00008 * 14 12 10 16 16 H 1.48506 * 109.47020 * 209.99756 * 14 12 10 17 17 H 1.48503 * 109.47308 * 329.99643 * 14 12 10 18 18 C 1.53000 * 109.47536 * 55.69202 * 3 2 1 19 19 C 1.53779 * 113.61753 * 157.50041 * 18 3 2 20 20 C 1.53784 * 87.07965 * 220.02003 * 19 18 3 21 21 C 1.53774 * 87.08187 * 25.42976 * 20 19 18 22 22 H 1.09006 * 109.46786 * 56.72447 * 1 2 3 23 23 H 1.09004 * 109.46915 * 176.71866 * 1 2 3 24 24 H 1.08992 * 109.47464 * 296.72480 * 1 2 3 25 25 H 1.08997 * 109.47572 * 239.99313 * 2 1 3 26 26 H 1.09007 * 109.46888 * 119.99415 * 2 1 3 27 27 H 1.00895 * 110.99728 * 37.86005 * 5 3 2 28 28 H 1.09005 * 109.46806 * 179.97438 * 8 6 5 29 29 H 1.08994 * 109.46919 * 299.99834 * 8 6 5 30 30 H 1.08997 * 109.46961 * 60.00185 * 8 6 5 31 31 H 1.09001 * 109.46972 * 175.00159 * 9 6 5 32 32 H 1.08996 * 109.46614 * 54.99780 * 9 6 5 33 33 H 0.97006 * 119.99746 * 180.02562 * 13 12 10 34 34 H 1.09011 * 112.84649 * 288.80493 * 18 3 2 35 35 H 1.08996 * 113.61089 * 334.56076 * 19 18 3 36 36 H 1.08991 * 113.61596 * 105.46912 * 19 18 3 37 37 H 1.09005 * 113.60966 * 270.88330 * 20 19 18 38 38 H 1.08993 * 113.69448 * 139.99151 * 20 19 18 39 39 H 1.09005 * 113.61691 * 220.02430 * 21 20 19 40 40 H 1.09003 * 113.61468 * 89.11932 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4434 0.0772 5 7 1.6371 2.1043 -1.2481 6 6 2.6131 1.8518 -2.3166 7 1 3.0061 0.8399 -2.2182 8 6 3.7610 2.8576 -2.2069 9 6 1.9303 2.0037 -3.6774 10 6 0.8810 0.9335 -3.8349 11 1 0.7172 0.2172 -3.0436 12 6 0.1293 0.8697 -4.9891 13 7 -0.7867 -0.0638 -5.1264 14 14 0.4122 2.1093 -6.3576 15 1 1.4400 1.5872 -7.2937 16 1 -0.8585 2.3338 -7.0927 17 1 0.8800 3.3925 -5.7744 18 6 1.4435 2.1944 1.1915 19 6 2.2629 3.4242 1.6167 20 6 1.9715 3.0177 3.0709 21 6 1.8074 1.5791 2.5530 22 1 -0.3633 0.5639 -0.8592 23 1 -0.3633 -1.0260 -0.0588 24 1 -0.3634 0.4621 0.9178 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.7118 1.8156 -1.5280 28 1 4.4854 2.6699 -2.9995 29 1 3.3680 3.8694 -2.3054 30 1 4.2474 2.7494 -1.2375 31 1 2.6725 1.9041 -4.4694 32 1 1.4607 2.9852 -3.7407 33 1 -1.3153 -0.1089 -5.9386 34 1 0.3788 2.3967 1.0743 35 1 3.3174 3.3602 1.3485 36 1 1.8087 4.3723 1.3290 37 1 1.0514 3.4464 3.4681 38 1 2.8219 3.1463 3.7405 39 1 0.9853 1.0376 3.0211 40 1 2.7374 1.0106 2.5407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = -23.173231 kcal Electronic energy + Delta-G solvation = -16513.885706 eV Core-core repulsion = 14134.456206 eV Total energy + Delta-G solvation = -2379.429500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42206 -37.95976 -35.21633 -34.10475 -30.90379 -29.49748 -27.59867 -26.29121 -24.92764 -24.55020 -21.65529 -20.57614 -19.88306 -18.93333 -16.83357 -16.73882 -16.19469 -16.07497 -15.39820 -14.83647 -14.60329 -14.33642 -14.01588 -13.62809 -13.41898 -13.32871 -13.17954 -12.85017 -12.64313 -12.46864 -12.45289 -12.10786 -11.85041 -11.72999 -11.60622 -11.36444 -11.23081 -11.12114 -10.91983 -10.81028 -10.72775 -9.04039 -8.26175 -6.28243 1.35294 1.37884 1.49569 2.37658 3.07516 3.43573 3.81930 3.93254 4.05192 4.14029 4.22080 4.30318 4.32270 4.42263 4.57051 4.67651 4.72519 4.84167 4.87998 4.96170 4.99517 5.03074 5.06722 5.14487 5.16637 5.19441 5.23513 5.26093 5.32437 5.37772 5.45287 5.54827 5.57483 5.70914 5.77328 6.29251 6.52268 6.71558 6.79611 7.35780 8.89516 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.007359 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.999304 B = 3803.834641 C = 4263.615803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.100 3.900 4 H 0.071 0.929 5 N -0.679 5.679 6 C 0.098 3.902 7 H 0.018 0.982 8 C -0.128 4.128 9 C -0.014 4.014 10 C -0.519 4.519 11 H 0.040 0.960 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.944 3.056 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.250 1.250 18 C -0.095 4.095 19 C -0.126 4.126 20 C -0.135 4.135 21 C -0.130 4.130 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.080 0.920 27 H 0.342 0.658 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.053 5.655 13.996 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C -0.010 4.010 4 H 0.089 0.911 5 N -0.312 5.312 6 C -0.012 4.012 7 H 0.036 0.964 8 C -0.186 4.186 9 C -0.052 4.052 10 C -0.557 4.557 11 H 0.058 0.942 12 C -0.188 4.188 13 N -0.589 5.589 14 Si 0.769 3.231 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.174 1.174 18 C -0.114 4.114 19 C -0.164 4.164 20 C -0.172 4.172 21 C -0.168 4.168 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.201 6.210 14.039 16.957 hybrid contribution -0.600 -1.006 -1.399 1.824 sum 6.601 5.205 12.641 15.180 Atomic orbital electron populations 1.21692 0.96027 1.00975 1.01427 1.22062 0.96521 0.98686 1.01017 1.21643 0.98615 0.90508 0.90225 0.91066 1.60812 1.06055 1.61031 1.03307 1.21301 0.92894 0.95915 0.91063 0.96444 1.21738 0.96623 0.99066 1.01130 1.19719 0.95039 0.96055 0.94341 1.21379 1.18189 1.13711 1.02431 0.94185 1.25888 0.94560 0.97286 1.01085 1.70062 1.24480 1.35798 1.28544 0.85745 0.77541 0.80689 0.79143 1.19574 1.21333 1.17396 1.22443 0.99419 0.96723 0.92804 1.22810 0.99876 0.97548 0.96153 1.22793 1.02101 0.96219 0.96115 1.22914 1.01826 0.96812 0.95242 0.94794 0.93618 0.90858 0.95080 0.90176 0.83699 0.92500 0.92641 0.92289 0.96351 0.96081 0.92768 0.90442 0.90572 0.92447 0.90028 0.90639 0.91295 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.28 71.98 0.67 -4.11 16 2 C -0.14 -4.59 5.51 30.59 0.17 -4.43 16 3 C 0.10 3.07 1.97 44.91 0.09 3.16 16 4 H 0.07 2.12 6.85 -2.38 -0.02 2.10 16 5 N -0.68 -25.45 6.06 -469.44 -2.84 -28.29 16 6 C 0.10 3.90 2.40 44.92 0.11 4.01 16 7 H 0.02 0.74 7.18 -2.38 -0.02 0.73 16 8 C -0.13 -4.09 9.39 71.98 0.68 -3.42 16 9 C -0.01 -0.66 3.65 29.85 0.11 -0.55 16 10 C -0.52 -29.29 8.68 25.60 0.22 -29.06 16 11 H 0.04 2.46 7.72 -2.91 -0.02 2.44 16 12 C 0.01 0.51 5.47 84.66 0.46 0.97 16 13 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 14 Si 0.94 44.88 27.47 68.60 1.88 46.76 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.25 -11.23 6.54 99.48 0.65 -10.57 16 18 C -0.09 -2.43 2.50 -10.27 -0.03 -2.45 16 19 C -0.13 -2.89 7.63 31.12 0.24 -2.65 16 20 C -0.13 -2.49 8.08 31.12 0.25 -2.23 16 21 C -0.13 -2.63 6.76 31.12 0.21 -2.42 16 22 H 0.03 1.34 6.28 -2.38 -0.01 1.33 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 2.05 6.83 -2.39 -0.02 2.03 16 25 H 0.03 1.18 7.46 -2.39 -0.02 1.16 16 26 H 0.08 2.13 7.61 -2.38 -0.02 2.11 16 27 H 0.34 14.78 4.93 -89.70 -0.44 14.33 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.66 7.38 -2.39 -0.02 1.64 16 31 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 32 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 33 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 34 H 0.08 2.17 7.29 -2.38 -0.02 2.16 16 35 H 0.08 1.72 7.96 -2.39 -0.02 1.70 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -61.66 305.22 3.00 -58.65 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.48 Total: 24.88 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.18 Total: -43.18 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.54 Total: -87.11 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -61.66 3.00 -58.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.481 kcal (2) G-P(sol) polarization free energy of solvation -61.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds