Wall clock time and date at job start Mon Mar 30 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 H 1.08993 * 109.47033 * 304.70487 * 3 2 1 5 5 C 1.52995 * 109.47065 * 184.70353 * 3 2 1 6 6 C 1.52998 * 109.47254 * 175.00166 * 5 3 2 7 7 C 1.53004 * 117.50280 * 243.62550 * 6 5 3 8 8 C 1.53001 * 60.00055 * 252.50781 * 7 6 5 9 9 N 1.46903 * 109.46750 * 64.70744 * 3 2 1 10 10 C 1.46903 * 110.99884 * 259.77873 * 9 3 2 11 11 H 1.09000 * 109.46654 * 45.22807 * 10 9 3 12 12 C 1.52995 * 109.47166 * 285.23078 * 10 9 3 13 13 C 1.52995 * 109.46926 * 165.22488 * 10 9 3 14 14 C 1.50698 * 109.47343 * 295.00353 * 13 10 9 15 15 H 1.08000 * 120.00407 * 359.97438 * 14 13 10 16 16 C 1.37889 * 119.99868 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99933 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99571 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47321 * 59.99979 * 18 16 14 20 20 H 1.48506 * 109.46731 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47162 * 299.99371 * 18 16 14 22 22 H 1.09003 * 109.47678 * 66.21104 * 1 2 3 23 23 H 1.09000 * 109.47057 * 186.21370 * 1 2 3 24 24 H 1.08998 * 109.47428 * 306.21166 * 1 2 3 25 25 H 1.09002 * 109.46861 * 240.00526 * 2 1 3 26 26 H 1.09002 * 109.47381 * 120.00539 * 2 1 3 27 27 H 1.09002 * 109.47351 * 295.00107 * 5 3 2 28 28 H 1.09009 * 109.47334 * 55.00258 * 5 3 2 29 29 H 1.09003 * 115.54922 * 29.32996 * 6 5 3 30 30 H 1.09001 * 117.49280 * 359.97438 * 7 6 5 31 31 H 1.08996 * 117.49714 * 145.01981 * 7 6 5 32 32 H 1.08996 * 117.49886 * 252.51200 * 8 7 6 33 33 H 1.08999 * 117.51869 * 107.47800 * 8 7 6 34 34 H 1.00899 * 110.99979 * 135.82791 * 9 3 2 35 35 H 1.08999 * 109.47505 * 60.00144 * 12 10 9 36 36 H 1.09000 * 109.46908 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47112 * 299.99448 * 12 10 9 38 38 H 1.09006 * 109.47229 * 175.00003 * 13 10 9 39 39 H 1.09003 * 109.47385 * 55.00366 * 13 10 9 40 40 H 0.97000 * 120.00144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6094 1.9800 -0.8448 5 6 3.5653 1.4441 -0.1183 6 6 4.0656 2.8845 -0.2437 7 6 4.7707 3.2769 -1.5436 8 6 5.5792 3.1083 -0.2556 9 7 1.6452 2.1013 1.2523 10 6 0.4624 2.9490 1.0510 11 1 -0.2778 2.4061 0.4634 12 6 0.8686 4.2232 0.3080 13 6 -0.1366 3.3194 2.4093 14 6 -0.6484 2.0754 3.0887 15 1 -0.5561 1.1165 2.6004 16 6 -1.2355 2.1616 4.3334 17 7 -1.3483 3.3293 4.9278 18 14 -1.8692 0.6195 5.1758 19 1 -0.7474 -0.3332 5.3734 20 1 -2.4507 0.9791 6.4941 21 1 -2.9130 -0.0133 4.3299 22 1 -0.3634 0.4145 -0.9403 23 1 -0.3633 -1.0216 0.1112 24 1 -0.3634 0.6071 0.8291 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9991 0.9849 0.7700 28 1 3.8619 0.8783 -1.0015 29 1 3.4489 3.6404 0.2427 30 1 4.8786 2.5087 -2.3093 31 1 4.6179 4.2910 -1.9127 32 1 5.9581 4.0114 0.2226 33 1 6.2185 2.2293 -0.1737 34 1 2.4106 2.6342 1.6374 35 1 1.2952 3.9593 -0.6596 36 1 -0.0090 4.8524 0.1592 37 1 1.6088 4.7662 0.8957 38 1 -0.9596 4.0193 2.2648 39 1 0.6300 3.7832 3.0301 40 1 -1.7616 3.3900 5.8032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695857844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:09 Heat of formation + Delta-G solvation = -1.662372 kcal Electronic energy + Delta-G solvation = -16355.830559 eV Core-core repulsion = 13977.333840 eV Total energy + Delta-G solvation = -2378.496719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.60181 -36.50090 -33.73061 -32.12888 -30.15836 -27.67426 -27.18052 -23.78543 -22.96714 -22.39586 -20.42751 -19.80901 -19.57581 -16.24010 -15.73882 -15.51655 -14.45328 -14.40912 -13.86441 -13.30061 -13.26082 -12.87124 -12.47041 -12.23102 -11.83279 -11.73547 -11.53421 -11.39342 -11.30652 -10.94726 -10.77301 -10.74501 -10.51426 -10.29839 -10.27374 -10.01063 -9.93109 -9.72443 -9.07988 -8.80720 -8.20414 -7.44714 -5.83110 -3.80343 3.44160 3.47755 3.51454 3.80374 4.60789 4.65048 4.83040 4.91449 5.02826 5.32926 5.44374 5.54261 5.56385 5.60232 5.71900 5.82655 5.86121 5.90081 5.94407 5.97670 6.06462 6.08961 6.18036 6.29479 6.36617 6.42110 6.50768 6.53723 6.71180 6.79154 7.07123 7.11493 7.67087 7.79252 8.11951 8.15941 8.30489 8.65974 9.26010 9.80912 11.29081 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030018 B = 0.007122 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.559830 B = 3930.812196 C = 4292.526555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.105 4.105 3 C 0.087 3.913 4 H 0.045 0.955 5 C -0.096 4.096 6 C -0.153 4.153 7 C -0.183 4.183 8 C -0.182 4.182 9 N -0.658 5.658 10 C 0.085 3.915 11 H 0.072 0.928 12 C -0.183 4.183 13 C 0.032 3.968 14 C -0.488 4.488 15 H 0.064 0.936 16 C 0.049 3.951 17 N -0.905 5.905 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.280 1.280 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.333 0.667 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 -1.926 -11.799 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.143 4.143 3 C -0.023 4.023 4 H 0.063 0.937 5 C -0.134 4.134 6 C -0.172 4.172 7 C -0.220 4.220 8 C -0.219 4.219 9 N -0.289 5.289 10 C -0.025 4.025 11 H 0.090 0.910 12 C -0.243 4.243 13 C -0.005 4.005 14 C -0.526 4.526 15 H 0.082 0.918 16 C -0.150 4.150 17 N -0.546 5.546 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.205 1.205 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.152 0.848 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.430 -2.394 -11.406 14.992 hybrid contribution 0.064 0.039 0.049 0.089 sum 9.494 -2.355 -11.357 14.989 Atomic orbital electron populations 1.21982 0.95818 1.01497 1.02678 1.21478 0.96520 0.95891 1.00441 1.21531 0.92453 0.95682 0.92667 0.93665 1.21500 0.96316 0.93588 1.02029 1.22498 0.94581 0.98972 1.01106 1.22994 1.05324 1.02292 0.91390 1.22929 0.94348 1.03061 1.01572 1.60603 1.07916 1.35770 1.24589 1.21943 0.91808 0.89575 0.99154 0.90985 1.22642 1.01285 1.00665 0.99663 1.19113 0.95145 0.96745 0.89546 1.21197 1.35784 0.94055 1.01586 0.91808 1.25012 0.96787 0.95512 0.97663 1.69956 1.45764 1.23314 1.15593 0.86728 0.79053 0.83992 0.78579 1.20403 1.21743 1.20544 0.94318 0.94012 0.88842 0.93654 0.91663 0.90853 0.91898 0.87457 0.89095 0.89256 0.89067 0.89002 0.84805 0.94107 0.92776 0.93432 0.96599 0.96772 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.04 37.15 0.34 -2.37 16 2 C -0.10 -1.60 5.61 -26.73 -0.15 -1.75 16 3 C 0.09 1.31 1.94 -67.71 -0.13 1.18 16 4 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 5 C -0.10 -1.23 4.96 -26.74 -0.13 -1.36 16 6 C -0.15 -1.87 5.29 -90.62 -0.48 -2.35 16 7 C -0.18 -1.94 10.18 -26.73 -0.27 -2.22 16 8 C -0.18 -1.94 10.25 -26.73 -0.27 -2.22 16 9 N -0.66 -11.99 5.41 -99.75 -0.54 -12.53 16 10 C 0.08 1.68 1.75 -67.72 -0.12 1.57 16 11 H 0.07 1.48 5.86 -51.93 -0.30 1.17 16 12 C -0.18 -3.11 8.18 37.15 0.30 -2.81 16 13 C 0.03 0.81 4.65 -27.89 -0.13 0.68 16 14 C -0.49 -13.58 8.82 -34.44 -0.30 -13.88 16 15 H 0.06 1.74 5.74 -52.49 -0.30 1.44 16 16 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 17 N -0.91 -27.55 13.29 55.43 0.74 -26.82 16 18 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.09 1.87 3.85 -51.93 -0.20 1.67 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.73 7.88 -51.92 -0.41 0.32 16 29 H 0.11 1.45 5.66 -51.93 -0.29 1.16 16 30 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.33 5.95 6.76 -39.29 -0.27 5.68 16 35 H 0.04 0.62 6.89 -51.93 -0.36 0.26 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -29.10 308.54 -8.70 -37.81 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.08 Total: 3.88 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -1.45 Total: -24.20 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.20 Total: -39.34 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.10 -8.70 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.143 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds