Wall clock time and date at job start Mon Mar 30 2020 03:24:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53001 * 109.47109 * 2 1
4 4 H 1.08993 * 109.47033 * 304.70487 * 3 2 1
5 5 C 1.52995 * 109.47065 * 184.70353 * 3 2 1
6 6 C 1.52998 * 109.47254 * 175.00166 * 5 3 2
7 7 C 1.53004 * 117.50280 * 243.62550 * 6 5 3
8 8 C 1.53001 * 60.00055 * 252.50781 * 7 6 5
9 9 N 1.46903 * 109.46750 * 64.70744 * 3 2 1
10 10 C 1.46903 * 110.99884 * 259.77873 * 9 3 2
11 11 H 1.09000 * 109.46654 * 45.22807 * 10 9 3
12 12 C 1.52995 * 109.47166 * 285.23078 * 10 9 3
13 13 C 1.52995 * 109.46926 * 165.22488 * 10 9 3
14 14 C 1.50698 * 109.47343 * 295.00353 * 13 10 9
15 15 H 1.08000 * 120.00407 * 359.97438 * 14 13 10
16 16 C 1.37889 * 119.99868 * 180.02562 * 14 13 10
17 17 N 1.31512 * 119.99933 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 119.99571 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.47321 * 59.99979 * 18 16 14
20 20 H 1.48506 * 109.46731 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.47162 * 299.99371 * 18 16 14
22 22 H 1.09003 * 109.47678 * 66.21104 * 1 2 3
23 23 H 1.09000 * 109.47057 * 186.21370 * 1 2 3
24 24 H 1.08998 * 109.47428 * 306.21166 * 1 2 3
25 25 H 1.09002 * 109.46861 * 240.00526 * 2 1 3
26 26 H 1.09002 * 109.47381 * 120.00539 * 2 1 3
27 27 H 1.09002 * 109.47351 * 295.00107 * 5 3 2
28 28 H 1.09009 * 109.47334 * 55.00258 * 5 3 2
29 29 H 1.09003 * 115.54922 * 29.32996 * 6 5 3
30 30 H 1.09001 * 117.49280 * 359.97438 * 7 6 5
31 31 H 1.08996 * 117.49714 * 145.01981 * 7 6 5
32 32 H 1.08996 * 117.49886 * 252.51200 * 8 7 6
33 33 H 1.08999 * 117.51869 * 107.47800 * 8 7 6
34 34 H 1.00899 * 110.99979 * 135.82791 * 9 3 2
35 35 H 1.08999 * 109.47505 * 60.00144 * 12 10 9
36 36 H 1.09000 * 109.46908 * 180.02562 * 12 10 9
37 37 H 1.09000 * 109.47112 * 299.99448 * 12 10 9
38 38 H 1.09006 * 109.47229 * 175.00003 * 13 10 9
39 39 H 1.09003 * 109.47385 * 55.00366 * 13 10 9
40 40 H 0.97000 * 120.00144 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6094 1.9800 -0.8448
5 6 3.5653 1.4441 -0.1183
6 6 4.0656 2.8845 -0.2437
7 6 4.7707 3.2769 -1.5436
8 6 5.5792 3.1083 -0.2556
9 7 1.6452 2.1013 1.2523
10 6 0.4624 2.9490 1.0510
11 1 -0.2778 2.4061 0.4634
12 6 0.8686 4.2232 0.3080
13 6 -0.1366 3.3194 2.4093
14 6 -0.6484 2.0754 3.0887
15 1 -0.5561 1.1165 2.6004
16 6 -1.2355 2.1616 4.3334
17 7 -1.3483 3.3293 4.9278
18 14 -1.8692 0.6195 5.1758
19 1 -0.7474 -0.3332 5.3734
20 1 -2.4507 0.9791 6.4941
21 1 -2.9130 -0.0133 4.3299
22 1 -0.3634 0.4145 -0.9403
23 1 -0.3633 -1.0216 0.1112
24 1 -0.3634 0.6071 0.8291
25 1 1.8932 -0.5138 -0.8901
26 1 1.8933 -0.5139 0.8899
27 1 3.9991 0.9849 0.7700
28 1 3.8619 0.8783 -1.0015
29 1 3.4489 3.6404 0.2427
30 1 4.8786 2.5087 -2.3093
31 1 4.6179 4.2910 -1.9127
32 1 5.9581 4.0114 0.2226
33 1 6.2185 2.2293 -0.1737
34 1 2.4106 2.6342 1.6374
35 1 1.2952 3.9593 -0.6596
36 1 -0.0090 4.8524 0.1592
37 1 1.6088 4.7662 0.8957
38 1 -0.9596 4.0193 2.2648
39 1 0.6300 3.7832 3.0301
40 1 -1.7616 3.3900 5.8032
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695857844.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:09
Heat of formation + Delta-G solvation = -17.937270 kcal
Electronic energy + Delta-G solvation = -16356.536292 eV
Core-core repulsion = 13977.333840 eV
Total energy + Delta-G solvation = -2379.202452 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.79808 -37.65390 -35.39147 -34.03025 -31.49854 -29.30056 -28.76821 -25.12250
-24.84264 -23.20092 -21.62725 -21.16943 -20.91693 -18.35930 -16.90083 -16.82837
-16.39560 -15.47097 -15.22163 -14.77705 -14.52834 -14.36064 -13.93701 -13.64777
-13.44509 -13.21377 -13.12256 -12.70703 -12.51673 -12.39049 -12.33360 -12.22513
-12.07162 -11.85696 -11.65401 -11.54179 -11.05453 -10.94905 -10.71425 -10.66581
-10.44363 -8.87823 -8.05794 -6.09439 1.42662 1.45531 1.52524 2.49919
2.94627 3.26932 3.53689 3.70924 4.00157 4.14112 4.26000 4.28419
4.37089 4.46725 4.53146 4.55935 4.64993 4.73874 4.80962 4.90017
4.94655 4.99573 5.07496 5.16831 5.18156 5.22581 5.25420 5.30078
5.34957 5.43768 5.49731 5.57493 5.72705 5.77799 5.99283 6.42559
6.64022 6.84555 7.06330 7.56037 9.06501
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.030018 B = 0.007122 C = 0.006521
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 932.559830 B = 3930.812196 C = 4292.526555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.103 4.103
3 C 0.091 3.909
4 H 0.047 0.953
5 C -0.086 4.086
6 C -0.172 4.172
7 C -0.173 4.173
8 C -0.178 4.178
9 N -0.672 5.672
10 C 0.098 3.902
11 H 0.067 0.933
12 C -0.172 4.172
13 C 0.037 3.963
14 C -0.493 4.493
15 H 0.067 0.933
16 C -0.009 4.009
17 N -0.944 5.944
18 Si 0.953 3.047
19 H -0.273 1.273
20 H -0.290 1.290
21 H -0.270 1.270
22 H 0.049 0.951
23 H 0.048 0.952
24 H 0.056 0.944
25 H 0.074 0.926
26 H 0.052 0.948
27 H 0.066 0.934
28 H 0.082 0.918
29 H 0.091 0.909
30 H 0.103 0.897
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.101 0.899
34 H 0.333 0.667
35 H 0.065 0.935
36 H 0.050 0.950
37 H 0.047 0.953
38 H -0.012 1.012
39 H -0.014 1.014
40 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.953 -3.248 -13.422 17.626
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.142 4.142
3 C -0.019 4.019
4 H 0.065 0.935
5 C -0.124 4.124
6 C -0.190 4.190
7 C -0.210 4.210
8 C -0.215 4.215
9 N -0.303 5.303
10 C -0.012 4.012
11 H 0.086 0.914
12 C -0.231 4.231
13 C 0.000 4.000
14 C -0.532 4.532
15 H 0.086 0.914
16 C -0.204 4.204
17 N -0.586 5.586
18 Si 0.780 3.220
19 H -0.198 1.198
20 H -0.216 1.216
21 H -0.195 1.195
22 H 0.068 0.932
23 H 0.067 0.933
24 H 0.075 0.925
25 H 0.093 0.907
26 H 0.071 0.929
27 H 0.084 0.916
28 H 0.101 0.899
29 H 0.109 0.891
30 H 0.121 0.879
31 H 0.112 0.888
32 H 0.112 0.888
33 H 0.119 0.881
34 H 0.152 0.848
35 H 0.083 0.917
36 H 0.070 0.930
37 H 0.066 0.934
38 H 0.006 0.994
39 H 0.005 0.995
40 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 10.529 -3.727 -13.047 17.176
hybrid contribution -0.262 0.461 0.529 0.749
sum 10.267 -3.267 -12.519 16.517
Atomic orbital electron populations
1.21925 0.96994 1.01246 1.01674 1.21491 0.95412 0.96033 1.01215
1.21555 0.94288 0.95127 0.90943 0.93503 1.21387 0.94166 0.94270
1.02571 1.22399 0.95519 0.98189 1.02880 1.23074 1.03896 1.02903
0.91103 1.23001 0.93319 1.03574 1.01576 1.60476 1.07412 1.35520
1.26911 1.21568 0.92447 0.91214 0.95926 0.91449 1.22492 1.01247
0.99001 1.00379 1.18994 0.93593 0.95186 0.92256 1.21582 1.34943
0.94965 1.01665 0.91446 1.25868 0.97359 0.98521 0.98665 1.70098
1.47029 1.25514 1.15986 0.85678 0.78678 0.80231 0.77461 1.19785
1.21563 1.19477 0.93156 0.93275 0.92521 0.90731 0.92933 0.91581
0.89927 0.89117 0.87893 0.88818 0.88814 0.88095 0.84798 0.91659
0.93039 0.93413 0.99404 0.99528 0.93477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.14 9.04 71.98 0.65 -4.49 16
2 C -0.10 -2.92 5.61 30.59 0.17 -2.75 16
3 C 0.09 2.57 1.94 44.91 0.09 2.66 16
4 H 0.05 1.34 6.51 -2.39 -0.02 1.32 16
5 C -0.09 -1.99 4.96 30.59 0.15 -1.84 16
6 C -0.17 -3.83 5.29 -10.79 -0.06 -3.89 16
7 C -0.17 -3.16 10.18 30.60 0.31 -2.84 16
8 C -0.18 -3.36 10.25 30.60 0.31 -3.05 16
9 N -0.67 -24.28 5.41 -469.49 -2.54 -26.82 16
10 C 0.10 3.94 1.75 44.91 0.08 4.02 16
11 H 0.07 2.77 5.86 -2.39 -0.01 2.76 16
12 C -0.17 -5.74 8.18 71.98 0.59 -5.15 16
13 C 0.04 1.95 4.65 29.85 0.14 2.09 16
14 C -0.49 -28.02 8.82 25.60 0.23 -27.79 16
15 H 0.07 3.73 5.74 -2.91 -0.02 3.71 16
16 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16
17 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16
18 Si 0.95 46.08 29.54 68.60 2.03 48.11 16
19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16
20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
24 H 0.06 2.24 3.85 -2.39 -0.01 2.23 16
25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
28 H 0.08 1.60 7.88 -2.38 -0.02 1.58 16
29 H 0.09 2.35 5.66 -2.39 -0.01 2.33 16
30 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16
31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16
33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
34 H 0.33 11.90 6.76 -89.69 -0.61 11.30 16
35 H 0.06 1.86 6.89 -2.39 -0.02 1.84 16
36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
37 H 0.05 1.57 7.82 -2.39 -0.02 1.56 16
38 H -0.01 -0.71 8.14 -2.38 -0.02 -0.72 16
39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16
40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
Total: -1.00 -63.10 308.54 3.28 -59.82
By element:
Atomic # 1 Polarization: 20.21 SS G_CDS: 0.39 Total: 20.60 kcal
Atomic # 6 Polarization: -46.21 SS G_CDS: 3.12 Total: -43.09 kcal
Atomic # 7 Polarization: -83.19 SS G_CDS: -2.25 Total: -85.44 kcal
Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal
Total: -63.10 3.28 -59.82 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695857844.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.879 kcal
(2) G-P(sol) polarization free energy of solvation -63.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds