Wall clock time and date at job start Mon Mar 30 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 H 1.08993 * 109.47033 * 304.70487 * 3 2 1 5 5 C 1.52995 * 109.47065 * 184.70353 * 3 2 1 6 6 C 1.52998 * 109.47254 * 175.00166 * 5 3 2 7 7 C 1.53004 * 117.50280 * 243.62550 * 6 5 3 8 8 C 1.53001 * 60.00055 * 252.50781 * 7 6 5 9 9 N 1.46903 * 109.46750 * 64.70744 * 3 2 1 10 10 C 1.46903 * 110.99884 * 259.77873 * 9 3 2 11 11 H 1.09000 * 109.46654 * 45.22807 * 10 9 3 12 12 C 1.52995 * 109.47166 * 285.23078 * 10 9 3 13 13 C 1.52995 * 109.46926 * 165.22488 * 10 9 3 14 14 C 1.50698 * 109.47343 * 295.00353 * 13 10 9 15 15 H 1.08000 * 120.00407 * 359.97438 * 14 13 10 16 16 C 1.37889 * 119.99868 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99933 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99571 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47321 * 59.99979 * 18 16 14 20 20 H 1.48506 * 109.46731 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47162 * 299.99371 * 18 16 14 22 22 H 1.09003 * 109.47678 * 66.21104 * 1 2 3 23 23 H 1.09000 * 109.47057 * 186.21370 * 1 2 3 24 24 H 1.08998 * 109.47428 * 306.21166 * 1 2 3 25 25 H 1.09002 * 109.46861 * 240.00526 * 2 1 3 26 26 H 1.09002 * 109.47381 * 120.00539 * 2 1 3 27 27 H 1.09002 * 109.47351 * 295.00107 * 5 3 2 28 28 H 1.09009 * 109.47334 * 55.00258 * 5 3 2 29 29 H 1.09003 * 115.54922 * 29.32996 * 6 5 3 30 30 H 1.09001 * 117.49280 * 359.97438 * 7 6 5 31 31 H 1.08996 * 117.49714 * 145.01981 * 7 6 5 32 32 H 1.08996 * 117.49886 * 252.51200 * 8 7 6 33 33 H 1.08999 * 117.51869 * 107.47800 * 8 7 6 34 34 H 1.00899 * 110.99979 * 135.82791 * 9 3 2 35 35 H 1.08999 * 109.47505 * 60.00144 * 12 10 9 36 36 H 1.09000 * 109.46908 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47112 * 299.99448 * 12 10 9 38 38 H 1.09006 * 109.47229 * 175.00003 * 13 10 9 39 39 H 1.09003 * 109.47385 * 55.00366 * 13 10 9 40 40 H 0.97000 * 120.00144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6094 1.9800 -0.8448 5 6 3.5653 1.4441 -0.1183 6 6 4.0656 2.8845 -0.2437 7 6 4.7707 3.2769 -1.5436 8 6 5.5792 3.1083 -0.2556 9 7 1.6452 2.1013 1.2523 10 6 0.4624 2.9490 1.0510 11 1 -0.2778 2.4061 0.4634 12 6 0.8686 4.2232 0.3080 13 6 -0.1366 3.3194 2.4093 14 6 -0.6484 2.0754 3.0887 15 1 -0.5561 1.1165 2.6004 16 6 -1.2355 2.1616 4.3334 17 7 -1.3483 3.3293 4.9278 18 14 -1.8692 0.6195 5.1758 19 1 -0.7474 -0.3332 5.3734 20 1 -2.4507 0.9791 6.4941 21 1 -2.9130 -0.0133 4.3299 22 1 -0.3634 0.4145 -0.9403 23 1 -0.3633 -1.0216 0.1112 24 1 -0.3634 0.6071 0.8291 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9991 0.9849 0.7700 28 1 3.8619 0.8783 -1.0015 29 1 3.4489 3.6404 0.2427 30 1 4.8786 2.5087 -2.3093 31 1 4.6179 4.2910 -1.9127 32 1 5.9581 4.0114 0.2226 33 1 6.2185 2.2293 -0.1737 34 1 2.4106 2.6342 1.6374 35 1 1.2952 3.9593 -0.6596 36 1 -0.0090 4.8524 0.1592 37 1 1.6088 4.7662 0.8957 38 1 -0.9596 4.0193 2.2648 39 1 0.6300 3.7832 3.0301 40 1 -1.7616 3.3900 5.8032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695857844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:09 Heat of formation + Delta-G solvation = -17.937270 kcal Electronic energy + Delta-G solvation = -16356.536292 eV Core-core repulsion = 13977.333840 eV Total energy + Delta-G solvation = -2379.202452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79808 -37.65390 -35.39147 -34.03025 -31.49854 -29.30056 -28.76821 -25.12250 -24.84264 -23.20092 -21.62725 -21.16943 -20.91693 -18.35930 -16.90083 -16.82837 -16.39560 -15.47097 -15.22163 -14.77705 -14.52834 -14.36064 -13.93701 -13.64777 -13.44509 -13.21377 -13.12256 -12.70703 -12.51673 -12.39049 -12.33360 -12.22513 -12.07162 -11.85696 -11.65401 -11.54179 -11.05453 -10.94905 -10.71425 -10.66581 -10.44363 -8.87823 -8.05794 -6.09439 1.42662 1.45531 1.52524 2.49919 2.94627 3.26932 3.53689 3.70924 4.00157 4.14112 4.26000 4.28419 4.37089 4.46725 4.53146 4.55935 4.64993 4.73874 4.80962 4.90017 4.94655 4.99573 5.07496 5.16831 5.18156 5.22581 5.25420 5.30078 5.34957 5.43768 5.49731 5.57493 5.72705 5.77799 5.99283 6.42559 6.64022 6.84555 7.06330 7.56037 9.06501 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030018 B = 0.007122 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.559830 B = 3930.812196 C = 4292.526555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C 0.091 3.909 4 H 0.047 0.953 5 C -0.086 4.086 6 C -0.172 4.172 7 C -0.173 4.173 8 C -0.178 4.178 9 N -0.672 5.672 10 C 0.098 3.902 11 H 0.067 0.933 12 C -0.172 4.172 13 C 0.037 3.963 14 C -0.493 4.493 15 H 0.067 0.933 16 C -0.009 4.009 17 N -0.944 5.944 18 Si 0.953 3.047 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.270 1.270 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.333 0.667 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.047 0.953 38 H -0.012 1.012 39 H -0.014 1.014 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.953 -3.248 -13.422 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.142 4.142 3 C -0.019 4.019 4 H 0.065 0.935 5 C -0.124 4.124 6 C -0.190 4.190 7 C -0.210 4.210 8 C -0.215 4.215 9 N -0.303 5.303 10 C -0.012 4.012 11 H 0.086 0.914 12 C -0.231 4.231 13 C 0.000 4.000 14 C -0.532 4.532 15 H 0.086 0.914 16 C -0.204 4.204 17 N -0.586 5.586 18 Si 0.780 3.220 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.195 1.195 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.529 -3.727 -13.047 17.176 hybrid contribution -0.262 0.461 0.529 0.749 sum 10.267 -3.267 -12.519 16.517 Atomic orbital electron populations 1.21925 0.96994 1.01246 1.01674 1.21491 0.95412 0.96033 1.01215 1.21555 0.94288 0.95127 0.90943 0.93503 1.21387 0.94166 0.94270 1.02571 1.22399 0.95519 0.98189 1.02880 1.23074 1.03896 1.02903 0.91103 1.23001 0.93319 1.03574 1.01576 1.60476 1.07412 1.35520 1.26911 1.21568 0.92447 0.91214 0.95926 0.91449 1.22492 1.01247 0.99001 1.00379 1.18994 0.93593 0.95186 0.92256 1.21582 1.34943 0.94965 1.01665 0.91446 1.25868 0.97359 0.98521 0.98665 1.70098 1.47029 1.25514 1.15986 0.85678 0.78678 0.80231 0.77461 1.19785 1.21563 1.19477 0.93156 0.93275 0.92521 0.90731 0.92933 0.91581 0.89927 0.89117 0.87893 0.88818 0.88814 0.88095 0.84798 0.91659 0.93039 0.93413 0.99404 0.99528 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.04 71.98 0.65 -4.49 16 2 C -0.10 -2.92 5.61 30.59 0.17 -2.75 16 3 C 0.09 2.57 1.94 44.91 0.09 2.66 16 4 H 0.05 1.34 6.51 -2.39 -0.02 1.32 16 5 C -0.09 -1.99 4.96 30.59 0.15 -1.84 16 6 C -0.17 -3.83 5.29 -10.79 -0.06 -3.89 16 7 C -0.17 -3.16 10.18 30.60 0.31 -2.84 16 8 C -0.18 -3.36 10.25 30.60 0.31 -3.05 16 9 N -0.67 -24.28 5.41 -469.49 -2.54 -26.82 16 10 C 0.10 3.94 1.75 44.91 0.08 4.02 16 11 H 0.07 2.77 5.86 -2.39 -0.01 2.76 16 12 C -0.17 -5.74 8.18 71.98 0.59 -5.15 16 13 C 0.04 1.95 4.65 29.85 0.14 2.09 16 14 C -0.49 -28.02 8.82 25.60 0.23 -27.79 16 15 H 0.07 3.73 5.74 -2.91 -0.02 3.71 16 16 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 17 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 18 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 2.24 3.85 -2.39 -0.01 2.23 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.60 7.88 -2.38 -0.02 1.58 16 29 H 0.09 2.35 5.66 -2.39 -0.01 2.33 16 30 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.33 11.90 6.76 -89.69 -0.61 11.30 16 35 H 0.06 1.86 6.89 -2.39 -0.02 1.84 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.57 7.82 -2.39 -0.02 1.56 16 38 H -0.01 -0.71 8.14 -2.38 -0.02 -0.72 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -63.10 308.54 3.28 -59.82 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.39 Total: 20.60 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 3.12 Total: -43.09 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.25 Total: -85.44 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -63.10 3.28 -59.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.879 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds