Wall clock time and date at job start Mon Mar 30 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.46935 * 2 1 4 4 H 1.09004 * 109.47668 * 304.99885 * 3 2 1 5 5 C 1.53006 * 109.47289 * 65.00195 * 3 2 1 6 6 C 1.52997 * 109.47012 * 184.99866 * 3 2 1 7 7 C 1.53007 * 109.47217 * 175.00094 * 6 3 2 8 8 N 1.46908 * 109.46960 * 185.28425 * 7 6 3 9 9 C 1.46902 * 110.99377 * 184.29390 * 8 7 6 10 10 C 1.53000 * 109.46622 * 185.66223 * 9 8 7 11 11 C 1.50704 * 115.55422 * 304.98814 * 10 9 8 12 12 H 1.07996 * 119.99470 * 274.71828 * 11 10 9 13 13 C 1.37872 * 119.99960 * 94.43578 * 11 10 9 14 14 N 1.31520 * 119.99718 * 180.30491 * 13 11 10 15 15 Si 1.86799 * 120.00176 * 0.30478 * 13 11 10 16 16 H 1.48504 * 109.46793 * 94.24179 * 15 13 11 17 17 H 1.48499 * 109.47082 * 214.23865 * 15 13 11 18 18 H 1.48501 * 109.47220 * 334.24375 * 15 13 11 19 19 C 1.52999 * 117.49888 * 90.65994 * 10 9 8 20 20 C 1.53000 * 117.49707 * 159.31747 * 10 9 8 21 21 H 1.09002 * 109.47604 * 299.99690 * 1 2 3 22 22 H 1.08999 * 109.47593 * 59.99840 * 1 2 3 23 23 H 1.09002 * 109.47591 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46996 * 239.99698 * 2 1 3 25 25 H 1.08998 * 109.46877 * 119.99954 * 2 1 3 26 26 H 1.08998 * 109.46967 * 179.97438 * 5 3 2 27 27 H 1.09001 * 109.46574 * 299.99695 * 5 3 2 28 28 H 1.08994 * 109.46791 * 59.99736 * 5 3 2 29 29 H 1.08998 * 109.47119 * 55.00359 * 6 3 2 30 30 H 1.08997 * 109.47758 * 295.00189 * 6 3 2 31 31 H 1.08991 * 109.47169 * 65.28052 * 7 6 3 32 32 H 1.08997 * 109.47000 * 305.28106 * 7 6 3 33 33 H 1.00897 * 110.99662 * 308.24646 * 8 7 6 34 34 H 1.09003 * 109.47100 * 65.66892 * 9 8 7 35 35 H 1.08994 * 109.47423 * 305.66222 * 9 8 7 36 36 H 0.96997 * 119.99721 * 180.02562 * 14 13 11 37 37 H 1.09001 * 117.50034 * 215.00325 * 19 10 9 38 38 H 1.09002 * 117.49927 * 0.02562 * 19 10 9 39 39 H 1.08999 * 117.50407 * 359.97438 * 20 10 9 40 40 H 1.08998 * 117.49881 * 144.97964 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4443 -0.1257 7 6 4.0644 2.8850 -0.2511 8 7 5.5125 2.8813 -0.4983 9 6 6.0457 4.2499 -0.5232 10 6 7.5226 4.2145 -0.9215 11 6 8.4029 3.3305 -0.0760 12 1 8.8285 3.7107 0.8408 13 6 8.6600 2.0345 -0.4701 14 7 9.4233 1.2612 0.2709 15 14 7.9241 1.3771 -2.0562 16 1 8.8997 1.5483 -3.1626 17 1 7.6071 -0.0646 -1.8945 18 1 6.6808 2.1250 -2.3723 19 6 7.8556 4.3262 -2.4106 20 6 8.1366 5.5029 -1.4728 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.9989 3.1540 1.3075 27 1 0.5488 2.1252 1.3969 28 1 2.0698 1.5875 2.1491 29 1 3.8569 0.8800 -1.0113 30 1 4.0029 0.9835 0.7596 31 1 3.8549 3.4239 0.6728 32 1 3.5554 3.3751 -1.0810 33 1 5.9946 2.3177 0.1858 34 1 5.9469 4.6964 0.4662 35 1 5.4883 4.8439 -1.2473 36 1 9.6045 0.3495 -0.0065 37 1 8.7113 3.7602 -2.7788 38 1 7.0225 4.4253 -3.1065 39 1 7.4884 6.3756 -1.5522 40 1 9.1771 5.7113 -1.2237 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696162500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:54 Heat of formation + Delta-G solvation = 1.417221 kcal Electronic energy + Delta-G solvation = -16023.331978 eV Core-core repulsion = 13644.968800 eV Total energy + Delta-G solvation = -2378.363178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.77778 -36.94575 -34.26382 -31.97353 -30.76077 -27.96373 -25.88217 -25.01211 -23.43805 -21.56684 -21.13286 -19.85470 -18.71169 -16.19633 -15.44446 -15.19756 -14.82714 -14.52894 -14.16104 -13.60324 -13.38458 -13.00561 -12.73104 -12.43516 -12.11659 -11.94507 -11.85141 -11.60443 -11.25829 -11.00118 -10.82895 -10.57838 -10.45318 -10.34498 -10.33328 -10.18165 -9.78848 -9.35091 -8.92297 -8.50366 -8.37577 -7.34277 -5.99661 -4.06268 3.50140 3.61104 3.91234 4.60521 4.67804 4.86875 4.93894 5.00198 5.26931 5.31429 5.36172 5.45451 5.51466 5.56971 5.78648 5.79875 5.88145 5.89947 5.95006 6.00949 6.05949 6.15904 6.17157 6.24162 6.28141 6.32111 6.46080 6.52233 6.57761 6.59148 6.63364 6.82793 7.14704 7.21252 7.84706 7.95796 8.26890 8.58236 8.99857 9.64506 11.10168 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.006934 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.395133 B = 4036.861681 C = 4437.773527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.089 4.089 4 H 0.068 0.932 5 C -0.149 4.149 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.679 5.679 9 C 0.103 3.897 10 C 0.009 3.991 11 C -0.495 4.495 12 H 0.071 0.929 13 C 0.080 3.920 14 N -0.904 5.904 15 Si 0.873 3.127 16 H -0.299 1.299 17 H -0.305 1.305 18 H -0.207 1.207 19 C -0.194 4.194 20 C -0.188 4.188 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.354 0.646 34 H 0.021 0.979 35 H 0.045 0.955 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.574 0.621 -1.168 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.108 4.108 4 H 0.086 0.914 5 C -0.207 4.207 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.312 5.312 9 C -0.026 4.026 10 C 0.008 3.992 11 C -0.532 4.532 12 H 0.090 0.910 13 C -0.122 4.122 14 N -0.540 5.540 15 Si 0.701 3.299 16 H -0.227 1.227 17 H -0.233 1.233 18 H -0.128 1.128 19 C -0.231 4.231 20 C -0.226 4.226 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.174 0.826 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.579 0.410 -1.811 15.689 hybrid contribution -0.110 -0.274 0.117 0.318 sum -15.689 0.136 -1.694 15.781 Atomic orbital electron populations 1.21820 0.96246 1.01203 1.01698 1.21579 0.95476 0.96696 1.02075 1.21133 0.95735 0.95800 0.98175 0.91390 1.21930 1.00644 1.00754 0.97325 1.21655 0.93969 0.97340 1.02494 1.21972 0.90587 0.95917 0.98619 1.60595 1.01575 1.13088 1.55958 1.21440 0.95072 0.88566 0.97558 1.19391 0.92048 0.95944 0.91863 1.20247 1.28911 0.95835 1.08213 0.91047 1.25020 0.93695 0.96328 0.97161 1.69938 1.37374 1.07930 1.38802 0.86995 0.82636 0.77340 0.82930 1.22651 1.23347 1.12841 1.22859 1.02115 1.03099 0.94992 1.22893 1.01040 0.91807 1.06885 0.92634 0.92941 0.93132 0.92011 0.92051 0.92516 0.92966 0.92809 0.91224 0.92082 0.96040 0.92190 0.82570 0.96128 0.93648 0.92816 0.90013 0.90896 0.91311 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.16 0.36 -1.03 16 2 C -0.12 -1.29 5.40 -26.74 -0.14 -1.44 16 3 C -0.09 -1.05 2.39 -90.62 -0.22 -1.26 16 4 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.63 8.71 37.16 0.32 -1.30 16 6 C -0.12 -1.69 4.90 -26.73 -0.13 -1.82 16 7 C 0.06 0.94 5.31 -3.82 -0.02 0.92 16 8 N -0.68 -13.69 3.86 -113.77 -0.44 -14.13 16 9 C 0.10 2.12 5.61 -3.82 -0.02 2.10 16 10 C 0.01 0.20 1.37 -155.66 -0.21 -0.01 16 11 C -0.49 -13.75 8.73 -34.44 -0.30 -14.05 16 12 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 13 C 0.08 2.30 5.13 -17.82 -0.09 2.21 16 14 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 15 Si 0.87 22.11 23.18 -169.99 -3.94 18.17 16 16 H -0.30 -7.73 7.08 56.52 0.40 -7.33 16 17 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 18 H -0.21 -4.93 5.17 56.52 0.29 -4.64 16 19 C -0.19 -4.28 7.06 -26.70 -0.19 -4.47 16 20 C -0.19 -3.94 9.96 -26.69 -0.27 -4.21 16 21 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.64 6.68 -51.93 -0.35 0.29 16 27 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.02 0.33 6.82 -51.93 -0.35 -0.02 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.35 7.83 7.24 -39.29 -0.28 7.54 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 37 H 0.08 1.93 6.31 -51.93 -0.33 1.61 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -29.35 305.06 -7.50 -36.85 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.58 Total: 5.69 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -0.91 Total: -24.36 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.33 Total: -40.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -3.94 Total: 18.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.35 -7.50 -36.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696162500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.265 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds