Wall clock time and date at job start Mon Mar 30 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47166 * 2 1 4 4 H 1.09002 * 109.62116 * 305.22780 * 3 2 1 5 5 C 1.50761 * 109.54435 * 65.45130 * 3 2 1 6 6 C 1.54120 * 112.64255 * 212.82094 * 5 3 2 7 7 C 1.53818 * 112.00323 * 318.59483 * 6 5 3 8 8 C 1.50817 * 111.56579 * 318.93934 * 7 6 5 9 9 N 1.47631 * 108.03825 * 95.09102 * 8 7 6 10 10 C 1.46902 * 110.99790 * 150.33040 * 9 8 7 11 11 H 1.09002 * 109.47227 * 178.95584 * 10 9 8 12 12 C 1.52999 * 109.46985 * 58.95549 * 10 9 8 13 13 C 1.50702 * 109.47002 * 298.95694 * 10 9 8 14 14 H 1.07998 * 120.00056 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99743 * 180.02562 * 13 10 9 16 16 N 1.31511 * 119.99868 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99878 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47138 * 89.99576 * 17 15 13 19 19 H 1.48500 * 109.47271 * 209.99689 * 17 15 13 20 20 H 1.48498 * 109.46878 * 330.00025 * 17 15 13 21 21 C 1.39778 * 114.77260 * 277.19032 * 9 8 7 22 22 H 1.08990 * 109.47011 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47127 * 300.00237 * 1 2 3 24 24 H 1.09008 * 109.46960 * 59.99719 * 1 2 3 25 25 H 1.08995 * 109.46954 * 240.00530 * 2 1 3 26 26 H 1.08995 * 109.47026 * 119.99954 * 2 1 3 27 27 H 1.08995 * 108.85360 * 333.68064 * 5 3 2 28 28 H 1.08999 * 108.85433 * 92.17355 * 5 3 2 29 29 H 1.09001 * 109.01622 * 197.91313 * 6 5 3 30 30 H 1.08997 * 108.91373 * 79.21102 * 6 5 3 31 31 H 1.09002 * 109.05153 * 198.42245 * 7 6 5 32 32 H 1.09000 * 109.04747 * 79.45213 * 7 6 5 33 33 H 1.08994 * 109.74689 * 214.73036 * 8 7 6 34 34 H 1.09000 * 109.74408 * 335.41063 * 8 7 6 35 35 H 1.08999 * 109.47365 * 299.99579 * 12 10 9 36 36 H 1.09000 * 109.46854 * 60.00663 * 12 10 9 37 37 H 1.09006 * 109.46656 * 179.97438 * 12 10 9 38 38 H 0.97009 * 119.99657 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.02439 * 182.86557 * 21 9 8 40 40 H 1.08999 * 109.01832 * 301.77145 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9850 -0.8387 5 6 1.6516 2.1148 1.2923 6 6 1.3697 3.6198 1.1169 7 6 2.3887 4.2917 0.1807 8 6 3.7888 3.7921 0.4353 9 7 4.0639 2.6980 -0.5169 10 6 5.4950 2.6303 -0.8418 11 1 5.6726 1.8043 -1.5304 12 6 6.2990 2.4070 0.4406 13 6 5.9255 3.9229 -1.4860 14 1 5.2079 4.7155 -1.6384 15 6 7.2355 4.0935 -1.8807 16 7 8.1094 3.1285 -1.6946 17 14 7.7691 5.6955 -2.6799 18 1 8.2217 6.6450 -1.6316 19 1 8.8851 5.4305 -3.6230 20 1 6.6245 6.2845 -3.4203 21 6 3.5791 1.4464 -0.1269 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.7571 1.6319 1.6856 28 1 2.4623 1.9923 2.0106 29 1 1.4108 4.1049 2.0921 30 1 0.3699 3.7459 0.7016 31 1 2.3611 5.3696 0.3398 32 1 2.1170 4.0777 -0.8530 33 1 4.5022 4.6018 0.2821 34 1 3.8671 3.4206 1.4570 35 1 6.1215 3.2331 1.1293 36 1 5.9876 1.4721 0.9065 37 1 7.3609 2.3564 0.1995 38 1 9.0311 3.2487 -1.9720 39 1 3.8764 0.7037 -0.8672 40 1 4.0145 1.1813 0.8366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703240279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:05 Heat of formation + Delta-G solvation = -16.390985 kcal Electronic energy + Delta-G solvation = -16810.748145 eV Core-core repulsion = 14431.612745 eV Total energy + Delta-G solvation = -2379.135400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.16980 -35.59714 -33.50253 -32.39232 -29.68191 -28.73109 -25.45417 -25.23587 -24.35134 -22.23245 -20.63007 -19.30410 -18.57819 -16.10423 -15.51394 -14.87708 -14.56036 -14.22280 -14.05544 -13.76748 -13.28615 -12.77673 -12.44412 -12.09127 -11.96800 -11.51226 -11.43131 -11.28668 -11.00552 -10.82094 -10.72167 -10.46315 -10.37249 -10.27717 -10.13818 -10.04294 -9.81115 -9.62934 -9.40044 -8.81462 -8.33960 -6.92623 -5.96631 -3.99641 3.33135 3.39853 3.44105 4.45146 4.87502 5.06873 5.19698 5.29334 5.35137 5.39565 5.52695 5.57219 5.74777 5.85548 5.92977 6.01681 6.07264 6.16061 6.23797 6.26261 6.35174 6.38447 6.43457 6.54815 6.63530 6.73509 6.78019 6.84382 6.91720 6.98254 7.05348 7.24123 7.63364 7.79765 7.94391 8.30682 8.48688 8.87010 9.07144 9.65239 11.10460 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038959 B = 0.007377 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.530711 B = 3794.592862 C = 4105.609156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.117 4.117 8 C 0.074 3.926 9 N -0.551 5.551 10 C 0.216 3.784 11 H 0.036 0.964 12 C -0.169 4.169 13 C -0.497 4.497 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.087 3.913 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.027 0.973 36 H 0.006 0.994 37 H 0.086 0.914 38 H 0.259 0.741 39 H 0.059 0.941 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 -2.700 4.935 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.107 4.107 4 H 0.096 0.904 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.053 4.053 9 N -0.274 5.274 10 C 0.110 3.890 11 H 0.054 0.946 12 C -0.228 4.228 13 C -0.535 4.535 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.043 4.043 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -11.837 -2.637 4.503 12.936 hybrid contribution 0.845 0.577 0.365 1.086 sum -10.992 -2.060 4.868 12.197 Atomic orbital electron populations 1.21823 0.96376 1.00866 1.01745 1.21534 0.95274 0.97006 1.01661 1.21126 0.96507 0.94798 0.98225 0.90371 1.21501 1.00644 0.95224 0.97828 1.21888 0.98742 0.95263 0.99254 1.21477 0.95383 0.98337 1.00336 1.21613 0.95746 0.95344 0.92589 1.59042 1.19697 1.03960 1.44694 1.19267 0.79719 0.97668 0.92322 0.94601 1.22385 1.05434 0.96089 0.98912 1.21157 0.94082 1.00273 1.38025 0.91907 1.24936 0.96695 0.96642 0.96109 1.69894 1.03479 1.32144 1.48003 0.86553 0.78217 0.83745 0.79214 1.20882 1.21370 1.19876 1.20859 0.92890 0.92667 0.97905 0.93338 0.92705 0.92837 0.92018 0.92523 0.92611 0.92822 0.93167 0.93106 0.93068 0.90933 0.89709 0.96022 0.95384 0.97539 0.89496 0.93100 0.92306 0.97517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.71 37.16 0.36 -1.29 16 2 C -0.12 -1.51 5.31 -26.73 -0.14 -1.65 16 3 C -0.09 -1.34 1.91 -90.99 -0.17 -1.51 16 4 H 0.08 1.28 7.11 -51.93 -0.37 0.91 16 5 C -0.11 -1.63 4.76 -27.27 -0.13 -1.76 16 6 C -0.11 -1.60 5.91 -25.72 -0.15 -1.75 16 7 C -0.12 -1.95 5.41 -27.40 -0.15 -2.10 16 8 C 0.07 1.47 3.71 -4.52 -0.02 1.45 16 9 N -0.55 -11.85 3.89 -233.39 -0.91 -12.75 16 10 C 0.22 5.47 2.27 -68.86 -0.16 5.31 16 11 H 0.04 1.00 7.83 -51.93 -0.41 0.60 16 12 C -0.17 -4.16 8.48 37.16 0.32 -3.84 16 13 C -0.50 -13.57 7.54 -34.44 -0.26 -13.83 16 14 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 15 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 16 N -0.90 -25.66 11.32 55.43 0.63 -25.03 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.09 1.65 3.99 -6.74 -0.03 1.62 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.58 6.27 -51.93 -0.33 0.25 16 24 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.80 8.05 -51.93 -0.42 0.39 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.69 5.79 -51.93 -0.30 0.39 16 28 H 0.05 0.82 6.57 -51.93 -0.34 0.48 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.29 7.26 -51.93 -0.38 0.92 16 33 H 0.08 1.87 6.18 -51.93 -0.32 1.55 16 34 H 0.02 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.03 0.66 7.02 -51.93 -0.36 0.30 16 36 H 0.01 0.13 6.84 -51.93 -0.36 -0.23 16 37 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.06 1.14 7.61 -51.93 -0.40 0.75 16 40 H 0.01 0.14 6.24 -51.93 -0.32 -0.19 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -27.54 290.07 -8.55 -36.09 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.00 Total: -1.20 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.62 Total: -17.87 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.28 Total: -37.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.54 -8.55 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703240279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.699 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds