Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47088 * 2 1 4 4 H 1.09002 * 108.98014 * 56.05709 * 3 2 1 5 5 C 1.53872 * 109.12686 * 297.13073 * 3 2 1 6 6 C 1.54164 * 112.00245 * 198.52950 * 5 3 2 7 7 C 1.50752 * 112.61095 * 318.45119 * 6 5 3 8 8 C 1.54430 * 109.02053 * 93.01786 * 7 6 5 9 9 N 1.39776 * 111.77649 * 282.59901 * 8 7 6 10 10 C 1.46898 * 111.00091 * 189.13229 * 9 8 7 11 11 H 1.09002 * 109.47142 * 181.09846 * 10 9 8 12 12 C 1.53003 * 109.46871 * 301.09655 * 10 9 8 13 13 C 1.50701 * 109.47391 * 61.10050 * 10 9 8 14 14 H 1.07999 * 119.99668 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00022 * 180.02562 * 13 10 9 16 16 N 1.31509 * 119.99925 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00060 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47170 * 60.00043 * 17 15 13 19 19 H 1.48497 * 109.47116 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47097 * 299.99814 * 17 15 13 21 21 C 1.47630 * 114.76279 * 62.27139 * 9 8 7 22 22 H 1.08991 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47373 * 300.00336 * 1 2 3 24 24 H 1.09003 * 109.46879 * 60.00205 * 1 2 3 25 25 H 1.08992 * 109.47201 * 240.00124 * 2 1 3 26 26 H 1.09003 * 109.46879 * 119.99795 * 2 1 3 27 27 H 1.09005 * 108.98277 * 77.85911 * 5 3 2 28 28 H 1.08994 * 108.87250 * 319.12177 * 5 3 2 29 29 H 1.09006 * 108.85202 * 197.64681 * 6 5 3 30 30 H 1.08998 * 108.77308 * 79.20899 * 6 5 3 31 31 H 1.08996 * 109.54624 * 333.15706 * 7 6 5 32 32 H 1.08999 * 109.54952 * 212.88450 * 7 6 5 33 33 H 1.09001 * 109.01805 * 162.00148 * 8 7 6 34 34 H 1.09000 * 109.01984 * 43.18743 * 8 7 6 35 35 H 1.08995 * 109.47015 * 300.00458 * 12 10 9 36 36 H 1.09000 * 109.46818 * 60.00879 * 12 10 9 37 37 H 1.09005 * 109.46922 * 180.02562 * 12 10 9 38 38 H 0.97005 * 120.00169 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.74695 * 36.84432 * 21 9 8 40 40 H 1.09000 * 109.74623 * 157.51759 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9686 0.8551 5 6 1.5830 2.1389 -1.2938 6 6 2.4104 3.4052 -1.5914 7 6 2.6803 4.2250 -0.3553 8 6 4.0388 3.8001 0.2436 9 7 3.9423 2.5943 0.9440 10 6 5.1799 2.3153 1.6846 11 1 5.0849 1.3621 2.2048 12 6 6.3550 2.2479 0.7071 13 6 5.4233 3.4130 2.6880 14 1 4.7284 4.2359 2.7673 15 6 6.5337 3.3673 3.5041 16 7 7.3801 2.3655 3.4071 17 14 6.8358 4.7283 4.7473 18 1 5.6955 4.7938 5.6964 19 1 8.0868 4.4461 5.4960 20 1 6.9649 6.0267 4.0383 21 6 3.5430 1.4333 0.1243 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5334 2.4160 -1.1956 28 1 1.6892 1.4424 -2.1255 29 1 1.8678 4.0196 -2.3100 30 1 3.3621 3.1071 -2.0312 31 1 1.8900 4.0538 0.3755 32 1 2.7124 5.2822 -0.6187 33 1 4.3866 4.5786 0.9227 34 1 4.7625 3.6852 -0.5633 35 1 6.1789 1.4540 -0.0186 36 1 6.4500 3.2011 0.1870 37 1 7.2733 2.0404 1.2566 38 1 8.1616 2.3335 3.9810 39 1 3.9948 1.5080 -0.8649 40 1 3.8669 0.5119 0.6083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703240282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = -16.793782 kcal Electronic energy + Delta-G solvation = -16799.379493 eV Core-core repulsion = 14420.226626 eV Total energy + Delta-G solvation = -2379.152867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.13268 -35.67885 -33.55670 -32.24628 -29.65778 -28.78283 -25.47847 -25.18061 -24.26877 -22.12349 -21.05042 -19.03747 -18.63242 -16.13133 -15.44468 -14.99861 -14.41614 -14.33196 -13.96156 -13.46336 -13.34008 -12.87474 -12.38841 -12.27215 -11.93372 -11.61914 -11.26705 -11.24196 -11.06790 -10.85723 -10.72386 -10.51335 -10.40548 -10.23562 -10.21901 -10.00851 -9.75792 -9.62373 -9.42736 -8.78916 -8.34231 -6.90886 -5.97119 -4.00684 3.34747 3.38881 3.41932 4.44307 4.92660 5.10669 5.13254 5.34238 5.35710 5.41786 5.50270 5.59626 5.76472 5.83957 6.00396 6.04759 6.10788 6.16435 6.19602 6.25819 6.31868 6.41692 6.45001 6.51159 6.62653 6.71713 6.76301 6.90217 6.91726 6.94782 7.03268 7.23076 7.62638 7.83060 7.90536 8.32114 8.57533 8.79099 9.07036 9.64369 11.09854 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.007454 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.946686 B = 3755.390711 C = 3983.394661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.085 4.085 4 H 0.082 0.918 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.121 4.121 8 C 0.083 3.917 9 N -0.548 5.548 10 C 0.217 3.783 11 H 0.037 0.963 12 C -0.170 4.170 13 C -0.501 4.501 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.072 3.928 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.007 0.993 35 H 0.005 0.995 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.260 0.740 39 H 0.026 0.974 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -1.396 -8.107 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.160 4.160 8 C -0.047 4.047 9 N -0.271 5.271 10 C 0.111 3.889 11 H 0.055 0.945 12 C -0.229 4.229 13 C -0.539 4.539 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.056 4.056 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.907 -1.389 -7.714 12.632 hybrid contribution 0.923 0.580 0.029 1.091 sum -8.984 -0.809 -7.686 11.850 Atomic orbital electron populations 1.21793 0.96472 1.00813 1.01664 1.21664 0.95357 0.97106 1.01568 1.21109 0.96487 0.94735 0.98089 0.89979 1.21958 0.98799 0.96288 0.97362 1.21414 0.99799 0.96262 0.98041 1.21559 0.99464 0.97969 0.96966 1.20846 0.93623 0.93987 0.96281 1.59054 1.37594 1.01185 1.29290 1.19271 0.81866 0.97352 0.90387 0.94477 1.22388 1.04994 0.97013 0.98520 1.21142 1.07370 1.07615 1.17822 0.91982 1.24924 0.96058 0.95962 0.97320 1.69879 1.13333 1.30761 1.39479 0.86608 0.77385 0.82252 0.81425 1.20267 1.21436 1.20399 1.21709 0.93910 0.94451 0.95485 0.93470 0.92793 0.92950 0.92688 0.91916 0.92840 0.93077 0.93350 0.92729 0.91283 0.92706 0.90086 0.97535 0.97614 0.95271 0.89507 0.93014 0.95549 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.66 37.16 0.36 -1.35 16 2 C -0.12 -1.58 5.15 -26.73 -0.14 -1.71 16 3 C -0.09 -1.31 1.77 -91.26 -0.16 -1.47 16 4 H 0.08 1.40 7.27 -51.93 -0.38 1.03 16 5 C -0.11 -1.44 4.50 -25.67 -0.12 -1.56 16 6 C -0.12 -1.70 5.32 -27.25 -0.14 -1.84 16 7 C -0.12 -1.98 5.65 -27.11 -0.15 -2.13 16 8 C 0.08 1.66 4.18 -6.75 -0.03 1.63 16 9 N -0.55 -11.76 3.91 -233.38 -0.91 -12.67 16 10 C 0.22 5.48 2.24 -68.86 -0.15 5.33 16 11 H 0.04 1.03 7.80 -51.93 -0.41 0.63 16 12 C -0.17 -4.18 8.37 37.16 0.31 -3.87 16 13 C -0.50 -13.74 7.77 -34.44 -0.27 -14.00 16 14 H 0.06 1.70 6.75 -52.49 -0.35 1.35 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 16 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.07 1.33 4.01 -4.52 -0.02 1.31 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.56 6.90 -51.93 -0.36 0.20 16 25 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 26 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 27 H 0.05 0.67 7.46 -51.93 -0.39 0.28 16 28 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.84 6.57 -51.93 -0.34 0.50 16 31 H 0.07 1.16 7.11 -51.93 -0.37 0.79 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.80 6.05 -51.93 -0.31 1.49 16 34 H 0.01 0.14 6.02 -51.93 -0.31 -0.17 16 35 H 0.00 0.11 7.46 -51.93 -0.39 -0.28 16 36 H 0.03 0.70 6.59 -51.93 -0.34 0.35 16 37 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.03 0.49 6.58 -51.93 -0.34 0.15 16 40 H 0.06 1.22 7.07 -51.93 -0.37 0.85 16 LS Contribution 290.54 15.07 4.38 4.38 Total: -1.00 -27.51 290.54 -8.58 -36.09 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.04 Total: -1.07 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.61 Total: -18.14 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.28 Total: -37.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.51 -8.58 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703240282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.296 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds