Wall clock time and date at job start Mon Mar 30 2020 03:15:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53005 * 109.47088 * 2 1
4 4 H 1.09002 * 108.98014 * 56.05709 * 3 2 1
5 5 C 1.53872 * 109.12686 * 297.13073 * 3 2 1
6 6 C 1.54164 * 112.00245 * 198.52950 * 5 3 2
7 7 C 1.50752 * 112.61095 * 318.45119 * 6 5 3
8 8 C 1.54430 * 109.02053 * 93.01786 * 7 6 5
9 9 N 1.39776 * 111.77649 * 282.59901 * 8 7 6
10 10 C 1.46898 * 111.00091 * 189.13229 * 9 8 7
11 11 H 1.09002 * 109.47142 * 181.09846 * 10 9 8
12 12 C 1.53003 * 109.46871 * 301.09655 * 10 9 8
13 13 C 1.50701 * 109.47391 * 61.10050 * 10 9 8
14 14 H 1.07999 * 119.99668 * 359.97438 * 13 10 9
15 15 C 1.37876 * 120.00022 * 180.02562 * 13 10 9
16 16 N 1.31509 * 119.99925 * 359.97438 * 15 13 10
17 17 Si 1.86799 * 120.00060 * 179.97438 * 15 13 10
18 18 H 1.48504 * 109.47170 * 60.00043 * 17 15 13
19 19 H 1.48497 * 109.47116 * 179.97438 * 17 15 13
20 20 H 1.48501 * 109.47097 * 299.99814 * 17 15 13
21 21 C 1.47630 * 114.76279 * 62.27139 * 9 8 7
22 22 H 1.08991 * 109.47105 * 179.97438 * 1 2 3
23 23 H 1.08997 * 109.47373 * 300.00336 * 1 2 3
24 24 H 1.09003 * 109.46879 * 60.00205 * 1 2 3
25 25 H 1.08992 * 109.47201 * 240.00124 * 2 1 3
26 26 H 1.09003 * 109.46879 * 119.99795 * 2 1 3
27 27 H 1.09005 * 108.98277 * 77.85911 * 5 3 2
28 28 H 1.08994 * 108.87250 * 319.12177 * 5 3 2
29 29 H 1.09006 * 108.85202 * 197.64681 * 6 5 3
30 30 H 1.08998 * 108.77308 * 79.20899 * 6 5 3
31 31 H 1.08996 * 109.54624 * 333.15706 * 7 6 5
32 32 H 1.08999 * 109.54952 * 212.88450 * 7 6 5
33 33 H 1.09001 * 109.01805 * 162.00148 * 8 7 6
34 34 H 1.09000 * 109.01984 * 43.18743 * 8 7 6
35 35 H 1.08995 * 109.47015 * 300.00458 * 12 10 9
36 36 H 1.09000 * 109.46818 * 60.00879 * 12 10 9
37 37 H 1.09005 * 109.46922 * 180.02562 * 12 10 9
38 38 H 0.97005 * 120.00169 * 179.97438 * 16 15 13
39 39 H 1.09002 * 109.74695 * 36.84432 * 21 9 8
40 40 H 1.09000 * 109.74623 * 157.51759 * 21 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6156 1.9686 0.8551
5 6 1.5830 2.1389 -1.2938
6 6 2.4104 3.4052 -1.5914
7 6 2.6803 4.2250 -0.3553
8 6 4.0388 3.8001 0.2436
9 7 3.9423 2.5943 0.9440
10 6 5.1799 2.3153 1.6846
11 1 5.0849 1.3621 2.2048
12 6 6.3550 2.2479 0.7071
13 6 5.4233 3.4130 2.6880
14 1 4.7284 4.2359 2.7673
15 6 6.5337 3.3673 3.5041
16 7 7.3801 2.3655 3.4071
17 14 6.8358 4.7283 4.7473
18 1 5.6955 4.7938 5.6964
19 1 8.0868 4.4461 5.4960
20 1 6.9649 6.0267 4.0383
21 6 3.5430 1.4333 0.1243
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3634 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 1.8933 -0.5138 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 0.5334 2.4160 -1.1956
28 1 1.6892 1.4424 -2.1255
29 1 1.8678 4.0196 -2.3100
30 1 3.3621 3.1071 -2.0312
31 1 1.8900 4.0538 0.3755
32 1 2.7124 5.2822 -0.6187
33 1 4.3866 4.5786 0.9227
34 1 4.7625 3.6852 -0.5633
35 1 6.1789 1.4540 -0.0186
36 1 6.4500 3.2011 0.1870
37 1 7.2733 2.0404 1.2566
38 1 8.1616 2.3335 3.9810
39 1 3.9948 1.5080 -0.8649
40 1 3.8669 0.5119 0.6083
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000703240282.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:07
Heat of formation + Delta-G solvation = -31.837381 kcal
Electronic energy + Delta-G solvation = -16800.031832 eV
Core-core repulsion = 14420.226626 eV
Total energy + Delta-G solvation = -2379.805206 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.64845 -37.19782 -35.03806 -34.05144 -30.91503 -30.59871 -27.39607 -26.73786
-25.69553 -23.57652 -22.43096 -20.80685 -19.88166 -18.15515 -17.16008 -16.36234
-16.05334 -15.95625 -15.43035 -14.83608 -14.55351 -14.48287 -13.95382 -13.70287
-13.48395 -13.02731 -12.96558 -12.85734 -12.66869 -12.41282 -12.27016 -12.18162
-12.09189 -11.96185 -11.50500 -11.38565 -11.22250 -11.00978 -10.88852 -10.77771
-10.48215 -8.66065 -8.10264 -6.21222 1.42215 1.43932 1.51481 2.43024
3.18468 3.39980 3.91838 3.97092 4.14592 4.21073 4.31810 4.46604
4.51534 4.66554 4.67866 4.73772 4.76230 4.84220 4.92227 4.94719
5.02246 5.03622 5.13262 5.17296 5.24685 5.29651 5.31451 5.35373
5.45986 5.52194 5.58532 5.61293 5.70736 5.75265 5.84125 6.26632
6.64511 6.91068 7.08639 7.48422 8.95769
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.034605 B = 0.007454 C = 0.007027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 808.946686 B = 3755.390711 C = 3983.394661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.116 4.116
3 C -0.079 4.079
4 H 0.063 0.937
5 C -0.102 4.102
6 C -0.116 4.116
7 C -0.111 4.111
8 C 0.084 3.916
9 N -0.553 5.553
10 C 0.220 3.780
11 H 0.003 0.997
12 C -0.154 4.154
13 C -0.517 4.517
14 H 0.057 0.943
15 C 0.011 3.989
16 N -0.922 5.922
17 Si 0.959 3.041
18 H -0.273 1.273
19 H -0.284 1.284
20 H -0.271 1.271
21 C 0.075 3.925
22 H 0.060 0.940
23 H 0.048 0.952
24 H 0.064 0.936
25 H 0.065 0.935
26 H 0.048 0.952
27 H 0.072 0.928
28 H 0.066 0.934
29 H 0.075 0.925
30 H 0.042 0.958
31 H 0.065 0.935
32 H 0.072 0.928
33 H 0.053 0.947
34 H -0.002 1.002
35 H 0.020 0.980
36 H 0.027 0.973
37 H 0.061 0.939
38 H 0.261 0.739
39 H 0.028 0.972
40 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.404 -0.815 -9.232 14.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.154 4.154
3 C -0.098 4.098
4 H 0.082 0.918
5 C -0.139 4.139
6 C -0.154 4.154
7 C -0.149 4.149
8 C -0.046 4.046
9 N -0.276 5.276
10 C 0.114 3.886
11 H 0.021 0.979
12 C -0.214 4.214
13 C -0.555 4.555
14 H 0.075 0.925
15 C -0.188 4.188
16 N -0.562 5.562
17 Si 0.784 3.216
18 H -0.198 1.198
19 H -0.210 1.210
20 H -0.197 1.197
21 C -0.053 4.053
22 H 0.079 0.921
23 H 0.067 0.933
24 H 0.083 0.917
25 H 0.084 0.916
26 H 0.067 0.933
27 H 0.091 0.909
28 H 0.085 0.915
29 H 0.094 0.906
30 H 0.061 0.939
31 H 0.084 0.916
32 H 0.091 0.909
33 H 0.071 0.929
34 H 0.016 0.984
35 H 0.039 0.961
36 H 0.046 0.954
37 H 0.079 0.921
38 H 0.070 0.930
39 H 0.047 0.953
40 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -11.598 -0.807 -8.854 14.614
hybrid contribution 1.455 0.368 0.368 1.546
sum -10.143 -0.439 -8.486 13.232
Atomic orbital electron populations
1.21750 0.94563 1.01891 1.02038 1.21625 0.96973 0.95414 1.01435
1.21011 0.93710 0.96382 0.98739 0.91840 1.21936 0.99554 0.95977
0.96440 1.21397 0.99843 0.96794 0.97360 1.21473 0.96489 0.99383
0.97570 1.20843 0.96038 0.92520 0.95177 1.59025 1.35414 1.02753
1.30433 1.19038 0.83847 0.95117 0.90645 0.97892 1.22174 1.03533
0.97350 0.98293 1.21405 1.07487 1.07986 1.18626 0.92505 1.25703
0.95817 0.98153 0.99105 1.70010 1.13661 1.32300 1.40232 0.85603
0.77320 0.79582 0.79072 1.19797 1.20961 1.19653 1.21784 0.96360
0.92503 0.94614 0.92115 0.93295 0.91663 0.91636 0.93344 0.90930
0.91534 0.90599 0.93893 0.91637 0.90949 0.92874 0.98446 0.96112
0.95358 0.92067 0.92989 0.95348 0.93294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.90 9.66 71.98 0.70 -2.21 16
2 C -0.12 -2.89 5.15 30.60 0.16 -2.73 16
3 C -0.08 -2.32 1.77 -11.21 -0.02 -2.34 16
4 H 0.06 2.11 7.27 -2.39 -0.02 2.10 16
5 C -0.10 -2.43 4.50 31.28 0.14 -2.29 16
6 C -0.12 -3.02 5.32 30.26 0.16 -2.86 16
7 C -0.11 -3.42 5.65 30.35 0.17 -3.25 16
8 C 0.08 3.39 4.18 88.07 0.37 3.76 16
9 N -0.55 -24.17 3.91 -892.29 -3.49 -27.65 16
10 C 0.22 11.53 2.24 44.17 0.10 11.63 16
11 H 0.00 0.18 7.80 -2.39 -0.02 0.16 16
12 C -0.15 -7.80 8.37 71.98 0.60 -7.20 16
13 C -0.52 -29.07 7.77 25.60 0.20 -28.87 16
14 H 0.06 3.19 6.75 -2.91 -0.02 3.17 16
15 C 0.01 0.59 5.30 84.66 0.45 1.04 16
16 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16
17 Si 0.96 44.41 29.54 68.60 2.03 46.44 16
18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
21 C 0.07 2.75 4.01 85.45 0.34 3.09 16
22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
24 H 0.06 1.15 6.90 -2.39 -0.02 1.13 16
25 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16
26 H 0.05 1.32 7.97 -2.39 -0.02 1.30 16
27 H 0.07 1.51 7.46 -2.38 -0.02 1.49 16
28 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16
29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16
30 H 0.04 1.22 6.57 -2.39 -0.02 1.21 16
31 H 0.06 2.08 7.11 -2.39 -0.02 2.06 16
32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
33 H 0.05 2.41 6.05 -2.39 -0.01 2.40 16
34 H 0.00 -0.10 6.02 -2.39 -0.01 -0.11 16
35 H 0.02 0.93 7.46 -2.39 -0.02 0.91 16
36 H 0.03 1.38 6.59 -2.39 -0.02 1.37 16
37 H 0.06 3.42 6.07 -2.38 -0.01 3.40 16
38 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16
39 H 0.03 1.03 6.58 -2.39 -0.02 1.01 16
40 H 0.05 1.92 7.07 -2.39 -0.02 1.90 16
Total: -1.00 -59.93 290.54 3.13 -56.80
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: 0.98 Total: 10.45 kcal
Atomic # 6 Polarization: -35.59 SS G_CDS: 3.37 Total: -32.23 kcal
Atomic # 7 Polarization: -78.21 SS G_CDS: -3.25 Total: -81.46 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal
Total: -59.93 3.13 -56.80 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703240282.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal
(2) G-P(sol) polarization free energy of solvation -59.928 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.798 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds