Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47088 * 2 1 4 4 H 1.09002 * 108.98014 * 56.05709 * 3 2 1 5 5 C 1.53872 * 109.12686 * 297.13073 * 3 2 1 6 6 C 1.54164 * 112.00245 * 198.52950 * 5 3 2 7 7 C 1.50752 * 112.61095 * 318.45119 * 6 5 3 8 8 C 1.54430 * 109.02053 * 93.01786 * 7 6 5 9 9 N 1.39776 * 111.77649 * 282.59901 * 8 7 6 10 10 C 1.46898 * 111.00091 * 189.13229 * 9 8 7 11 11 H 1.09002 * 109.47142 * 181.09846 * 10 9 8 12 12 C 1.53003 * 109.46871 * 301.09655 * 10 9 8 13 13 C 1.50701 * 109.47391 * 61.10050 * 10 9 8 14 14 H 1.07999 * 119.99668 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00022 * 180.02562 * 13 10 9 16 16 N 1.31509 * 119.99925 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00060 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47170 * 60.00043 * 17 15 13 19 19 H 1.48497 * 109.47116 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47097 * 299.99814 * 17 15 13 21 21 C 1.47630 * 114.76279 * 62.27139 * 9 8 7 22 22 H 1.08991 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47373 * 300.00336 * 1 2 3 24 24 H 1.09003 * 109.46879 * 60.00205 * 1 2 3 25 25 H 1.08992 * 109.47201 * 240.00124 * 2 1 3 26 26 H 1.09003 * 109.46879 * 119.99795 * 2 1 3 27 27 H 1.09005 * 108.98277 * 77.85911 * 5 3 2 28 28 H 1.08994 * 108.87250 * 319.12177 * 5 3 2 29 29 H 1.09006 * 108.85202 * 197.64681 * 6 5 3 30 30 H 1.08998 * 108.77308 * 79.20899 * 6 5 3 31 31 H 1.08996 * 109.54624 * 333.15706 * 7 6 5 32 32 H 1.08999 * 109.54952 * 212.88450 * 7 6 5 33 33 H 1.09001 * 109.01805 * 162.00148 * 8 7 6 34 34 H 1.09000 * 109.01984 * 43.18743 * 8 7 6 35 35 H 1.08995 * 109.47015 * 300.00458 * 12 10 9 36 36 H 1.09000 * 109.46818 * 60.00879 * 12 10 9 37 37 H 1.09005 * 109.46922 * 180.02562 * 12 10 9 38 38 H 0.97005 * 120.00169 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.74695 * 36.84432 * 21 9 8 40 40 H 1.09000 * 109.74623 * 157.51759 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9686 0.8551 5 6 1.5830 2.1389 -1.2938 6 6 2.4104 3.4052 -1.5914 7 6 2.6803 4.2250 -0.3553 8 6 4.0388 3.8001 0.2436 9 7 3.9423 2.5943 0.9440 10 6 5.1799 2.3153 1.6846 11 1 5.0849 1.3621 2.2048 12 6 6.3550 2.2479 0.7071 13 6 5.4233 3.4130 2.6880 14 1 4.7284 4.2359 2.7673 15 6 6.5337 3.3673 3.5041 16 7 7.3801 2.3655 3.4071 17 14 6.8358 4.7283 4.7473 18 1 5.6955 4.7938 5.6964 19 1 8.0868 4.4461 5.4960 20 1 6.9649 6.0267 4.0383 21 6 3.5430 1.4333 0.1243 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5334 2.4160 -1.1956 28 1 1.6892 1.4424 -2.1255 29 1 1.8678 4.0196 -2.3100 30 1 3.3621 3.1071 -2.0312 31 1 1.8900 4.0538 0.3755 32 1 2.7124 5.2822 -0.6187 33 1 4.3866 4.5786 0.9227 34 1 4.7625 3.6852 -0.5633 35 1 6.1789 1.4540 -0.0186 36 1 6.4500 3.2011 0.1870 37 1 7.2733 2.0404 1.2566 38 1 8.1616 2.3335 3.9810 39 1 3.9948 1.5080 -0.8649 40 1 3.8669 0.5119 0.6083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703240282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = -31.837381 kcal Electronic energy + Delta-G solvation = -16800.031832 eV Core-core repulsion = 14420.226626 eV Total energy + Delta-G solvation = -2379.805206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64845 -37.19782 -35.03806 -34.05144 -30.91503 -30.59871 -27.39607 -26.73786 -25.69553 -23.57652 -22.43096 -20.80685 -19.88166 -18.15515 -17.16008 -16.36234 -16.05334 -15.95625 -15.43035 -14.83608 -14.55351 -14.48287 -13.95382 -13.70287 -13.48395 -13.02731 -12.96558 -12.85734 -12.66869 -12.41282 -12.27016 -12.18162 -12.09189 -11.96185 -11.50500 -11.38565 -11.22250 -11.00978 -10.88852 -10.77771 -10.48215 -8.66065 -8.10264 -6.21222 1.42215 1.43932 1.51481 2.43024 3.18468 3.39980 3.91838 3.97092 4.14592 4.21073 4.31810 4.46604 4.51534 4.66554 4.67866 4.73772 4.76230 4.84220 4.92227 4.94719 5.02246 5.03622 5.13262 5.17296 5.24685 5.29651 5.31451 5.35373 5.45986 5.52194 5.58532 5.61293 5.70736 5.75265 5.84125 6.26632 6.64511 6.91068 7.08639 7.48422 8.95769 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.007454 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.946686 B = 3755.390711 C = 3983.394661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.079 4.079 4 H 0.063 0.937 5 C -0.102 4.102 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.084 3.916 9 N -0.553 5.553 10 C 0.220 3.780 11 H 0.003 0.997 12 C -0.154 4.154 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.075 3.925 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.053 0.947 34 H -0.002 1.002 35 H 0.020 0.980 36 H 0.027 0.973 37 H 0.061 0.939 38 H 0.261 0.739 39 H 0.028 0.972 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 -0.815 -9.232 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.098 4.098 4 H 0.082 0.918 5 C -0.139 4.139 6 C -0.154 4.154 7 C -0.149 4.149 8 C -0.046 4.046 9 N -0.276 5.276 10 C 0.114 3.886 11 H 0.021 0.979 12 C -0.214 4.214 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.784 3.216 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.053 4.053 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.598 -0.807 -8.854 14.614 hybrid contribution 1.455 0.368 0.368 1.546 sum -10.143 -0.439 -8.486 13.232 Atomic orbital electron populations 1.21750 0.94563 1.01891 1.02038 1.21625 0.96973 0.95414 1.01435 1.21011 0.93710 0.96382 0.98739 0.91840 1.21936 0.99554 0.95977 0.96440 1.21397 0.99843 0.96794 0.97360 1.21473 0.96489 0.99383 0.97570 1.20843 0.96038 0.92520 0.95177 1.59025 1.35414 1.02753 1.30433 1.19038 0.83847 0.95117 0.90645 0.97892 1.22174 1.03533 0.97350 0.98293 1.21405 1.07487 1.07986 1.18626 0.92505 1.25703 0.95817 0.98153 0.99105 1.70010 1.13661 1.32300 1.40232 0.85603 0.77320 0.79582 0.79072 1.19797 1.20961 1.19653 1.21784 0.96360 0.92503 0.94614 0.92115 0.93295 0.91663 0.91636 0.93344 0.90930 0.91534 0.90599 0.93893 0.91637 0.90949 0.92874 0.98446 0.96112 0.95358 0.92067 0.92989 0.95348 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.66 71.98 0.70 -2.21 16 2 C -0.12 -2.89 5.15 30.60 0.16 -2.73 16 3 C -0.08 -2.32 1.77 -11.21 -0.02 -2.34 16 4 H 0.06 2.11 7.27 -2.39 -0.02 2.10 16 5 C -0.10 -2.43 4.50 31.28 0.14 -2.29 16 6 C -0.12 -3.02 5.32 30.26 0.16 -2.86 16 7 C -0.11 -3.42 5.65 30.35 0.17 -3.25 16 8 C 0.08 3.39 4.18 88.07 0.37 3.76 16 9 N -0.55 -24.17 3.91 -892.29 -3.49 -27.65 16 10 C 0.22 11.53 2.24 44.17 0.10 11.63 16 11 H 0.00 0.18 7.80 -2.39 -0.02 0.16 16 12 C -0.15 -7.80 8.37 71.98 0.60 -7.20 16 13 C -0.52 -29.07 7.77 25.60 0.20 -28.87 16 14 H 0.06 3.19 6.75 -2.91 -0.02 3.17 16 15 C 0.01 0.59 5.30 84.66 0.45 1.04 16 16 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 17 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C 0.07 2.75 4.01 85.45 0.34 3.09 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.15 6.90 -2.39 -0.02 1.13 16 25 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 26 H 0.05 1.32 7.97 -2.39 -0.02 1.30 16 27 H 0.07 1.51 7.46 -2.38 -0.02 1.49 16 28 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.04 1.22 6.57 -2.39 -0.02 1.21 16 31 H 0.06 2.08 7.11 -2.39 -0.02 2.06 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 2.41 6.05 -2.39 -0.01 2.40 16 34 H 0.00 -0.10 6.02 -2.39 -0.01 -0.11 16 35 H 0.02 0.93 7.46 -2.39 -0.02 0.91 16 36 H 0.03 1.38 6.59 -2.39 -0.02 1.37 16 37 H 0.06 3.42 6.07 -2.38 -0.01 3.40 16 38 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 39 H 0.03 1.03 6.58 -2.39 -0.02 1.01 16 40 H 0.05 1.92 7.07 -2.39 -0.02 1.90 16 Total: -1.00 -59.93 290.54 3.13 -56.80 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.98 Total: 10.45 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.37 Total: -32.23 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -3.25 Total: -81.46 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -59.93 3.13 -56.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703240282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal (2) G-P(sol) polarization free energy of solvation -59.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds