Wall clock time and date at job start Mon Mar 30 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46637 * 2 1 4 4 C 1.53002 * 109.46553 * 180.02562 * 3 2 1 5 5 H 1.09001 * 108.75702 * 306.64681 * 4 3 2 6 6 C 1.50534 * 108.79243 * 65.00211 * 4 3 2 7 7 C 1.54523 * 108.86058 * 212.52834 * 6 4 3 8 8 C 1.45885 * 111.66995 * 282.75697 * 7 6 4 9 9 C 1.53980 * 112.66398 * 61.50004 * 8 7 6 10 10 N 1.44307 * 108.31741 * 278.60223 * 9 8 7 11 11 C 1.46899 * 110.99797 * 221.35016 * 10 9 8 12 12 C 1.50703 * 109.47107 * 66.04697 * 11 10 9 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48500 * 109.47049 * 210.00797 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.47939 * 113.65187 * 95.39347 * 10 9 8 21 21 H 1.09006 * 109.46914 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47180 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.47257 * 60.00136 * 1 2 3 24 24 H 1.09002 * 109.47180 * 240.00266 * 2 1 3 25 25 H 1.08993 * 109.47257 * 119.99864 * 2 1 3 26 26 H 1.08992 * 109.47192 * 60.00040 * 3 2 1 27 27 H 1.08999 * 109.46965 * 299.99555 * 3 2 1 28 28 H 1.08996 * 109.57349 * 92.71604 * 6 4 3 29 29 H 1.09002 * 109.67150 * 332.39947 * 6 4 3 30 30 H 1.08997 * 109.03854 * 162.19359 * 7 6 4 31 31 H 1.08997 * 109.04335 * 43.31626 * 7 6 4 32 32 H 1.09005 * 108.84035 * 300.68136 * 8 7 6 33 33 H 1.09001 * 108.75737 * 182.26450 * 8 7 6 34 34 H 1.09002 * 109.69523 * 158.89274 * 9 8 7 35 35 H 1.09005 * 109.69402 * 38.30900 * 9 8 7 36 36 H 1.09002 * 109.47043 * 186.04677 * 11 10 9 37 37 H 1.09001 * 109.47354 * 306.04739 * 11 10 9 38 38 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 39 39 H 1.09007 * 108.71443 * 79.13053 * 20 10 9 40 40 H 1.08997 * 108.71392 * 197.14702 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9208 0.8264 0.8272 6 6 4.0543 0.8406 -1.2925 7 6 5.3825 0.0959 -1.0296 8 6 6.5046 1.0207 -0.9126 9 6 6.3443 2.0026 0.2626 10 7 5.4821 3.0796 -0.1606 11 6 5.9804 4.3740 0.3233 12 6 7.2965 4.6859 -0.3415 13 1 7.7204 3.9918 -1.0520 14 6 7.9597 5.8569 -0.0418 15 7 9.1079 6.1293 -0.6223 16 14 7.2268 7.0571 1.1878 17 1 7.7105 6.7254 2.5520 18 1 7.6416 8.4394 0.8378 19 1 5.7453 6.9607 1.1508 20 6 4.0634 2.8851 0.2111 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9564 -0.8900 28 1 4.2177 1.6309 -2.0251 29 1 3.3112 0.1390 -1.6718 30 1 5.5732 -0.5924 -1.8529 31 1 5.2936 -0.4740 -0.1047 32 1 6.5893 1.5903 -1.8382 33 1 7.4193 0.4456 -0.7687 34 1 7.3190 2.4012 0.5439 35 1 5.8981 1.4875 1.1134 36 1 5.2581 5.1542 0.0832 37 1 6.1207 4.3286 1.4033 38 1 9.5747 6.9530 -0.4112 39 1 3.9381 3.1468 1.2619 40 1 3.4494 3.5564 -0.3893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703649934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:14 Heat of formation + Delta-G solvation = -23.283354 kcal Electronic energy + Delta-G solvation = -16349.397731 eV Core-core repulsion = 13969.963455 eV Total energy + Delta-G solvation = -2379.434276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.98228 -35.69727 -33.91568 -32.28291 -31.55223 -28.07519 -26.80498 -24.80577 -23.99463 -21.53207 -20.60070 -19.98731 -18.84078 -16.80399 -15.53048 -15.24087 -14.91518 -14.27988 -13.99940 -13.61421 -13.39142 -12.98052 -12.75685 -12.70113 -12.29888 -12.10778 -11.92430 -11.34967 -11.23167 -11.05614 -10.85573 -10.71102 -10.55745 -10.29685 -10.17757 -9.98511 -9.87689 -9.68701 -9.64438 -9.20755 -8.54774 -7.16157 -6.02201 -3.98654 3.29823 3.37536 3.40210 4.44654 4.63768 4.86933 4.94296 5.06917 5.23879 5.29756 5.33029 5.39470 5.54649 5.64278 5.73633 5.76260 5.82891 5.89264 5.99717 6.04097 6.06572 6.15892 6.22529 6.30009 6.34787 6.41998 6.49480 6.62552 6.65728 6.77754 6.84418 6.89352 7.01096 7.12351 7.69223 8.03257 8.31171 8.71916 9.08306 9.60349 11.11040 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036778 B = 0.006630 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.146868 B = 4221.937094 C = 4811.424039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.084 4.084 5 H 0.060 0.940 6 C -0.108 4.108 7 C -0.108 4.108 8 C -0.115 4.115 9 C 0.072 3.928 10 N -0.537 5.537 11 C 0.165 3.835 12 C -0.506 4.506 13 H 0.082 0.918 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.874 3.126 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.067 3.933 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.021 0.979 36 H 0.025 0.975 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.018 0.982 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 -11.555 1.745 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.103 4.103 5 H 0.079 0.921 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.056 4.056 10 N -0.261 5.261 11 C 0.039 3.961 12 C -0.544 4.544 13 H 0.100 0.900 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.061 4.061 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.043 0.957 37 H -0.001 1.001 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.140 -11.404 1.257 17.444 hybrid contribution -0.304 0.797 1.585 1.800 sum -13.443 -10.607 2.841 17.358 Atomic orbital electron populations 1.21780 0.96291 1.01192 1.01674 1.21609 0.95306 0.97317 1.02057 1.21680 0.95308 0.96388 1.01876 1.20986 0.94346 0.96424 0.98538 0.92110 1.21435 0.96097 0.99508 0.97541 1.20543 0.95849 0.97885 1.00310 1.20491 0.96757 0.97096 1.01014 1.21667 0.98017 0.91754 0.94205 1.60628 0.99702 1.03420 1.62338 1.20183 0.96538 0.86540 0.92803 1.21072 1.02628 1.05611 1.25098 0.90031 1.24895 0.94744 0.97680 0.96042 1.69896 1.15324 1.25450 1.43385 0.86878 0.80075 0.80929 0.81938 1.20425 1.21198 1.19254 1.22382 0.90932 0.95274 0.97520 0.93105 0.92971 0.92824 0.91580 0.92343 0.92383 0.91868 0.90781 0.92493 0.93158 0.93397 0.90964 0.93301 0.90007 0.96092 0.95691 1.00132 0.92737 0.96391 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.26 5.72 -26.73 -0.15 -1.41 16 3 C -0.11 -1.34 4.48 -26.73 -0.12 -1.46 16 4 C -0.08 -1.19 1.67 -91.37 -0.15 -1.34 16 5 H 0.06 0.87 6.65 -51.93 -0.35 0.53 16 6 C -0.11 -1.51 5.00 -27.16 -0.14 -1.65 16 7 C -0.11 -1.54 5.35 -29.30 -0.16 -1.70 16 8 C -0.12 -1.98 5.37 -29.59 -0.16 -2.13 16 9 C 0.07 1.42 5.00 -4.70 -0.02 1.40 16 10 N -0.54 -11.36 3.99 -236.07 -0.94 -12.30 16 11 C 0.17 4.09 3.65 -4.98 -0.02 4.07 16 12 C -0.51 -14.46 8.68 -34.44 -0.30 -14.76 16 13 H 0.08 2.53 7.86 -52.49 -0.41 2.12 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 16 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 C 0.07 1.17 4.72 -2.77 -0.01 1.16 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.66 6.20 -51.93 -0.32 0.34 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.19 7.78 -51.93 -0.40 0.78 16 29 H 0.06 0.69 5.74 -51.93 -0.30 0.39 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.64 7.59 -51.93 -0.39 0.25 16 32 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.83 6.73 -51.93 -0.35 1.48 16 35 H 0.02 0.38 6.79 -51.93 -0.35 0.03 16 36 H 0.03 0.63 7.09 -51.93 -0.37 0.26 16 37 H -0.02 -0.47 7.54 -51.93 -0.39 -0.86 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.02 0.32 8.02 -51.93 -0.42 -0.10 16 40 H 0.06 1.09 7.97 -51.93 -0.41 0.68 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -29.58 298.66 -8.73 -38.31 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.44 Total: -3.68 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.96 Total: -16.92 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.17 Total: -39.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.58 -8.73 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703649934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds