Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46788 * 2 1 4 4 C 1.53003 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50416 * 55.07868 * 4 3 2 6 6 C 1.53119 * 109.50200 * 294.99894 * 4 3 2 7 7 C 1.53126 * 109.16048 * 182.36460 * 6 4 3 8 8 C 1.53034 * 109.27454 * 57.65518 * 7 6 4 9 9 N 1.46845 * 109.52676 * 300.81918 * 8 7 6 10 10 C 1.46898 * 111.00565 * 185.84030 * 9 8 7 11 11 H 1.08999 * 109.47807 * 185.78920 * 10 9 8 12 12 C 1.53002 * 109.47271 * 305.79608 * 10 9 8 13 13 C 1.50704 * 109.47021 * 65.78958 * 10 9 8 14 14 H 1.08000 * 119.99637 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00301 * 180.02562 * 13 10 9 16 16 N 1.31507 * 119.99704 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00076 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47267 * 59.99475 * 17 15 13 19 19 H 1.48499 * 109.46868 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46938 * 299.99673 * 17 15 13 21 21 C 1.46850 * 111.19654 * 61.74248 * 9 8 7 22 22 H 1.08998 * 109.47368 * 59.99897 * 1 2 3 23 23 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47361 * 299.99970 * 1 2 3 25 25 H 1.08994 * 109.47010 * 239.99792 * 2 1 3 26 26 H 1.09003 * 109.46721 * 119.99796 * 2 1 3 27 27 H 1.09003 * 109.47413 * 60.00348 * 3 2 1 28 28 H 1.08995 * 109.47522 * 299.99733 * 3 2 1 29 29 H 1.08999 * 109.52185 * 62.46352 * 6 4 3 30 30 H 1.08993 * 109.52436 * 302.27002 * 6 4 3 31 31 H 1.08997 * 109.50129 * 177.59820 * 7 6 4 32 32 H 1.09006 * 109.50177 * 297.71578 * 7 6 4 33 33 H 1.08995 * 109.46502 * 60.83953 * 8 7 6 34 34 H 1.09005 * 109.46032 * 180.80589 * 8 7 6 35 35 H 1.09001 * 109.46559 * 299.99427 * 12 10 9 36 36 H 1.08999 * 109.47266 * 59.98981 * 12 10 9 37 37 H 1.08994 * 109.47187 * 179.97438 * 12 10 9 38 38 H 0.97001 * 119.99998 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46186 * 178.24176 * 21 9 8 40 40 H 1.09004 * 109.45360 * 58.27331 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9343 0.8542 -0.8416 6 6 4.0806 0.8328 1.3091 7 6 5.6107 0.8905 1.3270 8 6 6.0632 2.3437 1.1673 9 7 5.5501 2.8812 -0.0992 10 6 6.0788 4.2281 -0.3523 11 1 5.6049 4.6435 -1.2417 12 6 5.7827 5.1266 0.8502 13 6 7.5685 4.1509 -0.5667 14 1 8.0720 3.1966 -0.5201 15 6 8.2887 5.2985 -0.8224 16 7 7.6757 6.4606 -0.8787 17 14 10.1351 5.2027 -1.0889 18 1 10.4222 4.3313 -2.2566 19 1 10.6696 6.5643 -1.3446 20 1 10.7812 4.6361 0.1223 21 6 4.0818 2.8797 -0.1206 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.7545 -0.2049 1.3790 30 1 3.6849 1.3976 2.1530 31 1 5.9786 0.4968 2.2745 32 1 6.0070 0.2935 0.5056 33 1 5.6780 2.9373 1.9963 34 1 7.1524 2.3867 1.1653 35 1 4.7052 5.1825 1.0052 36 1 6.2566 4.7113 1.7395 37 1 6.1754 6.1259 0.6626 38 1 8.1822 7.2680 -1.0590 39 1 3.7317 3.3120 -1.0580 40 1 3.7059 3.4707 0.7146 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708561414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -27.871906 kcal Electronic energy + Delta-G solvation = -16394.764230 eV Core-core repulsion = 14015.130980 eV Total energy + Delta-G solvation = -2379.633250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.79734 -35.71118 -33.52062 -31.74627 -30.61754 -28.19112 -25.90110 -25.15735 -23.62682 -21.85519 -21.16755 -19.71822 -18.63396 -16.06101 -15.32547 -15.12569 -14.33312 -14.18518 -13.82059 -13.54240 -13.35403 -13.05220 -12.72462 -12.35924 -11.92318 -11.67407 -11.50622 -11.24825 -10.93529 -10.91496 -10.74138 -10.72804 -10.49416 -10.44594 -10.14859 -10.10442 -9.94612 -9.69675 -9.34543 -8.80443 -8.33357 -7.03183 -5.96241 -3.99643 3.35428 3.39429 3.42635 4.44719 4.80142 4.97560 5.11529 5.20246 5.32735 5.35780 5.42775 5.48945 5.68515 5.79165 5.85895 5.92248 6.03049 6.03902 6.12324 6.17797 6.24647 6.33930 6.37394 6.39409 6.44571 6.61195 6.69154 6.78296 6.89430 6.91696 6.93450 7.20776 7.56045 7.77639 7.90563 8.23019 8.46832 8.68824 9.06562 9.65190 11.10859 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048868 B = 0.006037 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.837418 B = 4637.256160 C = 4866.678922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.084 4.084 5 H 0.074 0.926 6 C -0.111 4.111 7 C -0.119 4.119 8 C 0.063 3.937 9 N -0.531 5.531 10 C 0.211 3.789 11 H 0.037 0.963 12 C -0.171 4.171 13 C -0.497 4.497 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.061 3.939 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.079 0.921 35 H 0.006 0.994 36 H 0.029 0.971 37 H 0.087 0.913 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -9.952 3.476 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.103 4.103 5 H 0.092 0.908 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.065 4.065 9 N -0.255 5.255 10 C 0.105 3.895 11 H 0.055 0.945 12 C -0.230 4.230 13 C -0.536 4.536 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.068 4.068 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.025 0.975 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.561 -10.052 3.056 14.205 hybrid contribution 0.694 0.677 0.541 1.110 sum -8.867 -9.375 3.598 13.396 Atomic orbital electron populations 1.21786 0.96409 1.01112 1.01634 1.21562 0.95211 0.97429 1.01962 1.21625 0.95593 0.96231 1.01708 1.21210 0.93576 0.97362 0.98150 0.90792 1.21626 0.96206 0.99719 0.97297 1.21647 0.95171 0.98145 1.00701 1.21923 1.00843 0.92812 0.90941 1.62213 1.04791 1.26639 1.31865 1.19278 0.95112 0.81672 0.93448 0.94509 1.22391 0.95860 1.05149 0.99586 1.21086 0.91779 0.93325 1.47365 0.92070 1.24928 0.98447 0.95386 0.95579 1.69878 1.35588 0.98092 1.49998 0.86594 0.85427 0.76878 0.78682 1.20266 1.21446 1.20405 1.22011 0.90377 0.94541 0.99831 0.92885 0.93169 0.92976 0.92154 0.91984 0.92421 0.92127 0.92661 0.92913 0.92781 0.91699 0.96000 0.90267 0.97532 0.95159 0.89459 0.93032 0.91911 0.95992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.33 5.69 -26.73 -0.15 -1.49 16 3 C -0.11 -1.43 4.69 -26.73 -0.13 -1.55 16 4 C -0.08 -1.28 2.35 -90.54 -0.21 -1.49 16 5 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 6 C -0.11 -1.60 4.98 -26.60 -0.13 -1.73 16 7 C -0.12 -1.91 6.09 -26.65 -0.16 -2.08 16 8 C 0.06 1.27 4.55 -3.84 -0.02 1.25 16 9 N -0.53 -11.66 4.59 -228.08 -1.05 -12.71 16 10 C 0.21 5.41 2.31 -68.86 -0.16 5.26 16 11 H 0.04 1.04 7.99 -51.93 -0.41 0.62 16 12 C -0.17 -4.23 8.23 37.16 0.31 -3.92 16 13 C -0.50 -13.77 7.88 -34.44 -0.27 -14.04 16 14 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 16 N -0.90 -25.80 11.32 55.43 0.63 -25.17 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.06 1.15 4.42 -3.83 -0.02 1.13 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.65 6.62 -51.93 -0.34 0.31 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.69 6.69 -51.93 -0.35 0.35 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.45 6.58 -51.93 -0.34 0.11 16 34 H 0.08 1.73 6.70 -51.93 -0.35 1.38 16 35 H 0.01 0.13 6.81 -51.93 -0.35 -0.22 16 36 H 0.03 0.72 6.46 -51.93 -0.34 0.39 16 37 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 40 H 0.02 0.42 6.87 -51.93 -0.36 0.07 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -28.00 298.82 -8.92 -36.92 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.31 Total: -1.87 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.67 Total: -18.21 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.42 Total: -37.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.00 -8.92 -36.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708561414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.047 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds