Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46788 * 2 1 4 4 C 1.53003 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50416 * 55.07868 * 4 3 2 6 6 C 1.53119 * 109.50200 * 294.99894 * 4 3 2 7 7 C 1.53126 * 109.16048 * 182.36460 * 6 4 3 8 8 C 1.53034 * 109.27454 * 57.65518 * 7 6 4 9 9 N 1.46845 * 109.52676 * 300.81918 * 8 7 6 10 10 C 1.46898 * 111.00565 * 185.84030 * 9 8 7 11 11 H 1.08999 * 109.47807 * 185.78920 * 10 9 8 12 12 C 1.53002 * 109.47271 * 305.79608 * 10 9 8 13 13 C 1.50704 * 109.47021 * 65.78958 * 10 9 8 14 14 H 1.08000 * 119.99637 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00301 * 180.02562 * 13 10 9 16 16 N 1.31507 * 119.99704 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00076 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47267 * 59.99475 * 17 15 13 19 19 H 1.48499 * 109.46868 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46938 * 299.99673 * 17 15 13 21 21 C 1.46850 * 111.19654 * 61.74248 * 9 8 7 22 22 H 1.08998 * 109.47368 * 59.99897 * 1 2 3 23 23 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47361 * 299.99970 * 1 2 3 25 25 H 1.08994 * 109.47010 * 239.99792 * 2 1 3 26 26 H 1.09003 * 109.46721 * 119.99796 * 2 1 3 27 27 H 1.09003 * 109.47413 * 60.00348 * 3 2 1 28 28 H 1.08995 * 109.47522 * 299.99733 * 3 2 1 29 29 H 1.08999 * 109.52185 * 62.46352 * 6 4 3 30 30 H 1.08993 * 109.52436 * 302.27002 * 6 4 3 31 31 H 1.08997 * 109.50129 * 177.59820 * 7 6 4 32 32 H 1.09006 * 109.50177 * 297.71578 * 7 6 4 33 33 H 1.08995 * 109.46502 * 60.83953 * 8 7 6 34 34 H 1.09005 * 109.46032 * 180.80589 * 8 7 6 35 35 H 1.09001 * 109.46559 * 299.99427 * 12 10 9 36 36 H 1.08999 * 109.47266 * 59.98981 * 12 10 9 37 37 H 1.08994 * 109.47187 * 179.97438 * 12 10 9 38 38 H 0.97001 * 119.99998 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46186 * 178.24176 * 21 9 8 40 40 H 1.09004 * 109.45360 * 58.27331 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9343 0.8542 -0.8416 6 6 4.0806 0.8328 1.3091 7 6 5.6107 0.8905 1.3270 8 6 6.0632 2.3437 1.1673 9 7 5.5501 2.8812 -0.0992 10 6 6.0788 4.2281 -0.3523 11 1 5.6049 4.6435 -1.2417 12 6 5.7827 5.1266 0.8502 13 6 7.5685 4.1509 -0.5667 14 1 8.0720 3.1966 -0.5201 15 6 8.2887 5.2985 -0.8224 16 7 7.6757 6.4606 -0.8787 17 14 10.1351 5.2027 -1.0889 18 1 10.4222 4.3313 -2.2566 19 1 10.6696 6.5643 -1.3446 20 1 10.7812 4.6361 0.1223 21 6 4.0818 2.8797 -0.1206 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.7545 -0.2049 1.3790 30 1 3.6849 1.3976 2.1530 31 1 5.9786 0.4968 2.2745 32 1 6.0070 0.2935 0.5056 33 1 5.6780 2.9373 1.9963 34 1 7.1524 2.3867 1.1653 35 1 4.7052 5.1825 1.0052 36 1 6.2566 4.7113 1.7395 37 1 6.1754 6.1259 0.6626 38 1 8.1822 7.2680 -1.0590 39 1 3.7317 3.3120 -1.0580 40 1 3.7059 3.4707 0.7146 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708561414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -43.442539 kcal Electronic energy + Delta-G solvation = -16395.439423 eV Core-core repulsion = 14015.130980 eV Total energy + Delta-G solvation = -2380.308443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29818 -37.12494 -35.08807 -33.48587 -31.86417 -30.01866 -27.41034 -26.91158 -25.18914 -23.17293 -22.46667 -21.10830 -20.20013 -18.15691 -17.08614 -16.16911 -16.04522 -15.66160 -15.27238 -14.96182 -14.80204 -14.37801 -14.12420 -13.63143 -13.58445 -13.20384 -12.91116 -12.72363 -12.67530 -12.51183 -12.32948 -12.25579 -11.94696 -11.84893 -11.75394 -11.46423 -11.38855 -11.13339 -10.90482 -10.68144 -10.48084 -8.80666 -8.10249 -6.21423 1.42495 1.44453 1.52078 2.43235 3.18292 3.36192 3.87235 4.00209 4.04299 4.24540 4.31851 4.41484 4.51335 4.61240 4.69460 4.73776 4.76646 4.82505 4.87490 4.91229 4.99493 5.05147 5.06810 5.13866 5.16429 5.21899 5.27260 5.32620 5.39975 5.46677 5.53527 5.58309 5.64063 5.71082 5.81593 6.23342 6.53937 6.80249 6.92462 7.47913 8.95823 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048868 B = 0.006037 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.837418 B = 4637.256160 C = 4866.678922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.077 4.077 5 H 0.067 0.933 6 C -0.106 4.106 7 C -0.112 4.112 8 C 0.064 3.936 9 N -0.542 5.542 10 C 0.214 3.786 11 H 0.001 0.999 12 C -0.155 4.155 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.960 3.040 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.061 3.939 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.016 0.984 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.261 0.739 39 H 0.050 0.950 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 -11.760 4.222 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.146 4.146 4 C -0.095 4.095 5 H 0.085 0.915 6 C -0.143 4.143 7 C -0.150 4.150 8 C -0.064 4.064 9 N -0.265 5.265 10 C 0.107 3.893 11 H 0.019 0.981 12 C -0.214 4.214 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.563 5.563 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.038 -11.878 3.808 16.010 hybrid contribution 0.806 1.256 0.295 1.521 sum -9.232 -10.621 4.104 14.659 Atomic orbital electron populations 1.21771 0.95310 1.01988 1.01758 1.21529 0.96159 0.95755 1.02332 1.21572 0.93412 0.97879 1.01724 1.21155 0.95385 0.94379 0.98629 0.91455 1.21615 0.94644 1.01441 0.96603 1.21609 0.96617 0.94883 1.01861 1.21935 0.99375 0.95463 0.89625 1.62140 1.06807 1.24298 1.33297 1.19048 0.94211 0.83802 0.92265 0.98079 1.22173 0.96588 1.03357 0.99273 1.21329 0.92985 0.93204 1.47661 0.92692 1.25716 1.02909 0.94994 0.95212 1.70010 1.37183 0.98615 1.50448 0.85577 0.80040 0.77010 0.78782 1.19816 1.20942 1.19599 1.22098 0.88369 0.97314 0.98972 0.92979 0.91941 0.92710 0.92131 0.91242 0.92167 0.92457 0.89729 0.92585 0.90361 0.92019 0.96561 0.92700 0.96071 0.95028 0.92046 0.92988 0.93130 0.96479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.23 5.69 30.60 0.17 -2.06 16 3 C -0.11 -2.49 4.69 30.60 0.14 -2.35 16 4 C -0.08 -2.20 2.35 -10.74 -0.03 -2.22 16 5 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.11 -2.73 4.98 30.68 0.15 -2.58 16 7 C -0.11 -3.37 6.09 30.65 0.19 -3.18 16 8 C 0.06 2.55 4.55 86.33 0.39 2.94 16 9 N -0.54 -24.09 4.59 -875.51 -4.02 -28.11 16 10 C 0.21 11.32 2.31 44.17 0.10 11.43 16 11 H 0.00 0.08 7.99 -2.39 -0.02 0.06 16 12 C -0.15 -7.84 8.23 71.98 0.59 -7.25 16 13 C -0.51 -29.07 7.88 25.60 0.20 -28.87 16 14 H 0.05 3.11 7.12 -2.91 -0.02 3.09 16 15 C 0.01 0.56 5.30 84.66 0.45 1.01 16 16 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 17 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.06 2.28 4.42 86.32 0.38 2.66 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.20 6.62 -2.39 -0.02 1.18 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.76 6.69 -2.39 -0.02 1.75 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.02 0.66 6.58 -2.39 -0.02 0.64 16 34 H 0.05 2.42 6.70 -2.38 -0.02 2.40 16 35 H 0.02 0.96 6.81 -2.39 -0.02 0.94 16 36 H 0.03 1.54 6.46 -2.39 -0.02 1.52 16 37 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.05 1.98 8.02 -2.38 -0.02 1.96 16 40 H 0.02 0.65 6.87 -2.39 -0.02 0.64 16 Total: -1.00 -60.64 298.82 2.68 -57.96 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.97 Total: 9.76 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.46 Total: -32.16 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.78 Total: -82.07 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.64 2.68 -57.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708561414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.513 kcal (2) G-P(sol) polarization free energy of solvation -60.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds