Wall clock time and date at job start Mon Mar 30 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47142 * 2 1 4 4 H 1.09002 * 108.95903 * 60.56357 * 3 2 1 5 5 C 1.54073 * 108.98102 * 301.84110 * 3 2 1 6 6 H 1.08997 * 108.91900 * 77.54292 * 5 3 2 7 7 C 1.50702 * 108.91601 * 318.98732 * 5 3 2 8 8 H 1.08003 * 120.00110 * 354.20006 * 7 5 3 9 9 C 1.37878 * 119.99459 * 174.19322 * 7 5 3 10 10 N 1.31506 * 120.00432 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99399 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46835 * 120.00413 * 11 9 7 14 14 H 1.48495 * 109.47142 * 240.00282 * 11 9 7 15 15 C 1.54294 * 112.28586 * 198.26920 * 5 3 2 16 16 C 1.50467 * 113.03352 * 318.29823 * 15 5 3 17 17 C 1.54303 * 108.79138 * 92.13868 * 16 15 5 18 18 C 1.45859 * 111.71077 * 282.73253 * 17 16 15 19 19 N 1.44269 * 108.98005 * 179.36784 * 3 2 1 20 20 C 1.46898 * 110.99945 * 339.95315 * 19 3 2 21 21 C 1.53001 * 109.47220 * 167.66474 * 20 19 3 22 22 H 1.09003 * 109.47282 * 305.05472 * 1 2 3 23 23 H 1.09004 * 109.47577 * 65.05118 * 1 2 3 24 24 H 1.08993 * 109.47347 * 185.05580 * 1 2 3 25 25 H 1.09005 * 109.47186 * 240.00909 * 2 1 3 26 26 H 1.08988 * 109.47445 * 120.00048 * 2 1 3 27 27 H 0.97000 * 120.00042 * 179.97438 * 10 9 7 28 28 H 1.08994 * 108.77325 * 79.21628 * 15 5 3 29 29 H 1.09001 * 108.76942 * 197.38243 * 15 5 3 30 30 H 1.09000 * 109.57086 * 211.96469 * 16 15 5 31 31 H 1.08993 * 109.57531 * 332.22304 * 16 15 5 32 32 H 1.09008 * 108.90860 * 162.21189 * 17 16 15 33 33 H 1.08996 * 109.08692 * 43.37142 * 17 16 15 34 34 H 1.08998 * 108.79597 * 300.55510 * 18 17 16 35 35 H 1.08998 * 108.79421 * 182.21397 * 18 17 16 36 36 H 1.08992 * 109.47737 * 287.67124 * 20 19 3 37 37 H 1.09008 * 109.46638 * 47.66711 * 20 19 3 38 38 H 1.09005 * 109.47057 * 300.00958 * 21 20 19 39 39 H 1.09004 * 109.46816 * 60.00134 * 21 20 19 40 40 H 1.08992 * 109.47606 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6804 1.9453 0.8978 5 6 1.4823 2.1712 -1.2377 6 1 0.4420 2.4379 -1.0519 7 6 1.5417 1.2398 -2.4210 8 1 2.0183 0.2753 -2.3256 9 6 0.9875 1.6190 -3.6251 10 7 0.4075 2.7936 -3.7413 11 14 1.0604 0.4642 -5.0917 12 1 1.7606 -0.7863 -4.7027 13 1 -0.3191 0.1409 -5.5361 14 1 1.7973 1.1198 -6.2018 15 6 2.2757 3.4523 -1.5693 16 6 2.6378 4.2532 -0.3480 17 6 4.0327 3.8106 0.1411 18 6 3.9759 2.5408 0.8564 19 7 3.4825 1.4302 0.0151 20 6 3.9929 0.1391 0.4952 21 6 5.4936 0.0467 0.2118 22 1 -0.3634 0.5903 0.8413 23 1 -0.3634 0.4335 -0.9318 24 1 -0.3634 -1.0236 0.0906 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 0.0180 3.0605 -4.5886 28 1 3.1917 3.1729 -2.0897 29 1 1.6748 4.0754 -2.2318 30 1 2.6576 5.3136 -0.5994 31 1 1.9010 4.0773 0.4357 32 1 4.4333 4.5760 0.8059 33 1 4.6949 3.7056 -0.7183 34 1 3.3142 2.6510 1.7156 35 1 4.9757 2.2937 1.2133 36 1 3.8201 0.0563 1.5682 37 1 3.4754 -0.6703 -0.0197 38 1 5.6665 0.1295 -0.8613 39 1 6.0111 0.8562 0.7266 40 1 5.8723 -0.9114 0.5676 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709988218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:20 Heat of formation + Delta-G solvation = 0.548553 kcal Electronic energy + Delta-G solvation = -17352.435424 eV Core-core repulsion = 14974.034577 eV Total energy + Delta-G solvation = -2378.400847 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18096 -34.43842 -34.24593 -31.87498 -29.79175 -29.27842 -26.26480 -24.15903 -23.83698 -21.67778 -20.66437 -19.53806 -18.07392 -15.98959 -15.48623 -14.97648 -14.77162 -13.96737 -13.58352 -13.06768 -12.99885 -12.67245 -12.51097 -12.25952 -11.91234 -11.36512 -11.18652 -10.94747 -10.89047 -10.77815 -10.71163 -10.53723 -10.38457 -10.09415 -9.85519 -9.58757 -9.37657 -9.26811 -8.95210 -8.35100 -8.17120 -7.34580 -5.83443 -3.82392 3.37761 3.46373 3.49677 4.57012 4.58739 5.34155 5.49524 5.50081 5.62164 5.71061 5.84549 5.92504 5.93988 5.99790 6.07826 6.15748 6.22242 6.36032 6.37381 6.43150 6.51687 6.58240 6.60761 6.64641 6.74508 6.88113 6.93004 7.09739 7.19042 7.28717 7.47343 7.62582 7.86749 7.93963 8.04322 8.24625 8.31005 8.69768 9.19004 9.78232 11.24920 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.011322 C = 0.010047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.539545 B = 2472.563326 C = 2786.368247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.096 3.904 4 H 0.017 0.983 5 C 0.066 3.934 6 H 0.025 0.975 7 C -0.485 4.485 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.881 3.119 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.288 1.288 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.111 4.111 18 C 0.060 3.940 19 N -0.507 5.507 20 C 0.043 3.957 21 C -0.146 4.146 22 H 0.035 0.965 23 H 0.082 0.918 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.255 0.745 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -2.173 8.392 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.012 4.012 4 H 0.035 0.965 5 C 0.047 3.953 6 H 0.043 0.957 7 C -0.523 4.523 8 H 0.078 0.922 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.710 3.290 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.214 1.214 15 C -0.135 4.135 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.068 4.068 19 N -0.231 5.231 20 C -0.085 4.085 21 C -0.204 4.204 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.458 -2.006 7.769 9.704 hybrid contribution -0.256 -0.619 -0.058 0.673 sum 5.202 -2.625 7.711 9.665 Atomic orbital electron populations 1.21751 0.96205 0.99530 1.02839 1.21968 0.96163 0.97311 1.00354 1.21701 0.85380 0.95515 0.98609 0.96527 1.19090 0.93634 0.91809 0.90740 0.95678 1.21277 1.34506 1.01763 0.94745 0.92207 1.24948 0.95968 0.94977 0.98427 1.69946 1.39019 1.19667 1.24901 0.86713 0.77308 0.81398 0.83602 1.19979 1.21515 1.21430 1.21221 1.00319 0.97331 0.94596 1.21442 0.95115 0.98616 1.00096 1.20539 0.98817 0.95416 1.00153 1.20977 0.98937 0.92823 0.94030 1.61755 1.09836 1.01155 1.50388 1.22297 0.95549 0.93841 0.96765 1.21819 0.96018 1.00020 1.02533 0.94614 0.89949 0.94606 0.89851 0.94776 0.93541 0.93480 0.91675 0.94042 0.93627 0.93562 0.91650 0.95966 0.92589 0.96362 0.89663 0.91819 0.93382 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.35 37.16 0.35 -2.39 16 2 C -0.12 -2.31 3.52 -26.73 -0.09 -2.40 16 3 C 0.10 1.98 1.66 -68.56 -0.11 1.86 16 4 H 0.02 0.35 6.51 -51.93 -0.34 0.01 16 5 C 0.07 1.60 1.41 -90.53 -0.13 1.47 16 6 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 7 C -0.48 -12.72 6.58 -34.44 -0.23 -12.94 16 8 H 0.06 1.58 5.62 -52.48 -0.29 1.29 16 9 C 0.06 1.55 5.31 -17.82 -0.09 1.45 16 10 N -0.90 -25.59 11.75 55.43 0.65 -24.94 16 11 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 C -0.10 -2.28 4.35 -27.32 -0.12 -2.40 16 16 C -0.12 -2.25 5.59 -27.31 -0.15 -2.40 16 17 C -0.11 -1.91 5.51 -29.43 -0.16 -2.08 16 18 C 0.06 1.01 4.78 -6.70 -0.03 0.98 16 19 N -0.51 -9.61 4.19 -231.43 -0.97 -10.58 16 20 C 0.04 0.71 4.37 -3.82 -0.02 0.69 16 21 C -0.15 -2.08 9.96 37.16 0.37 -1.71 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.79 6.28 -51.93 -0.33 1.47 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.73 5.04 -51.93 -0.26 1.47 16 26 H 0.03 0.58 6.50 -51.94 -0.34 0.24 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 28 H 0.05 1.19 7.20 -51.93 -0.37 0.81 16 29 H 0.06 1.72 6.82 -51.93 -0.35 1.37 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.89 7.16 -51.93 -0.37 0.52 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 1.18 7.58 -51.93 -0.39 0.79 16 34 H 0.02 0.38 7.24 -51.93 -0.38 0.00 16 35 H 0.06 0.85 6.05 -51.93 -0.31 0.53 16 36 H 0.02 0.28 7.88 -51.93 -0.41 -0.13 16 37 H 0.09 1.44 5.35 -51.92 -0.28 1.17 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.65 6.46 -51.93 -0.34 0.31 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 285.54 15.07 4.30 4.30 Total: -1.00 -27.37 285.54 -8.28 -35.66 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.83 Total: -1.02 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.42 Total: -19.87 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.32 Total: -35.52 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.37 -8.28 -35.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.206 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds