Wall clock time and date at job start Mon Mar 30 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47142 * 2 1 4 4 H 1.09002 * 108.95903 * 60.56357 * 3 2 1 5 5 C 1.54073 * 108.98102 * 301.84110 * 3 2 1 6 6 H 1.08997 * 108.91900 * 77.54292 * 5 3 2 7 7 C 1.50702 * 108.91601 * 318.98732 * 5 3 2 8 8 H 1.08003 * 120.00110 * 354.20006 * 7 5 3 9 9 C 1.37878 * 119.99459 * 174.19322 * 7 5 3 10 10 N 1.31506 * 120.00432 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99399 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46835 * 120.00413 * 11 9 7 14 14 H 1.48495 * 109.47142 * 240.00282 * 11 9 7 15 15 C 1.54294 * 112.28586 * 198.26920 * 5 3 2 16 16 C 1.50467 * 113.03352 * 318.29823 * 15 5 3 17 17 C 1.54303 * 108.79138 * 92.13868 * 16 15 5 18 18 C 1.45859 * 111.71077 * 282.73253 * 17 16 15 19 19 N 1.44269 * 108.98005 * 179.36784 * 3 2 1 20 20 C 1.46898 * 110.99945 * 339.95315 * 19 3 2 21 21 C 1.53001 * 109.47220 * 167.66474 * 20 19 3 22 22 H 1.09003 * 109.47282 * 305.05472 * 1 2 3 23 23 H 1.09004 * 109.47577 * 65.05118 * 1 2 3 24 24 H 1.08993 * 109.47347 * 185.05580 * 1 2 3 25 25 H 1.09005 * 109.47186 * 240.00909 * 2 1 3 26 26 H 1.08988 * 109.47445 * 120.00048 * 2 1 3 27 27 H 0.97000 * 120.00042 * 179.97438 * 10 9 7 28 28 H 1.08994 * 108.77325 * 79.21628 * 15 5 3 29 29 H 1.09001 * 108.76942 * 197.38243 * 15 5 3 30 30 H 1.09000 * 109.57086 * 211.96469 * 16 15 5 31 31 H 1.08993 * 109.57531 * 332.22304 * 16 15 5 32 32 H 1.09008 * 108.90860 * 162.21189 * 17 16 15 33 33 H 1.08996 * 109.08692 * 43.37142 * 17 16 15 34 34 H 1.08998 * 108.79597 * 300.55510 * 18 17 16 35 35 H 1.08998 * 108.79421 * 182.21397 * 18 17 16 36 36 H 1.08992 * 109.47737 * 287.67124 * 20 19 3 37 37 H 1.09008 * 109.46638 * 47.66711 * 20 19 3 38 38 H 1.09005 * 109.47057 * 300.00958 * 21 20 19 39 39 H 1.09004 * 109.46816 * 60.00134 * 21 20 19 40 40 H 1.08992 * 109.47606 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6804 1.9453 0.8978 5 6 1.4823 2.1712 -1.2377 6 1 0.4420 2.4379 -1.0519 7 6 1.5417 1.2398 -2.4210 8 1 2.0183 0.2753 -2.3256 9 6 0.9875 1.6190 -3.6251 10 7 0.4075 2.7936 -3.7413 11 14 1.0604 0.4642 -5.0917 12 1 1.7606 -0.7863 -4.7027 13 1 -0.3191 0.1409 -5.5361 14 1 1.7973 1.1198 -6.2018 15 6 2.2757 3.4523 -1.5693 16 6 2.6378 4.2532 -0.3480 17 6 4.0327 3.8106 0.1411 18 6 3.9759 2.5408 0.8564 19 7 3.4825 1.4302 0.0151 20 6 3.9929 0.1391 0.4952 21 6 5.4936 0.0467 0.2118 22 1 -0.3634 0.5903 0.8413 23 1 -0.3634 0.4335 -0.9318 24 1 -0.3634 -1.0236 0.0906 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 0.0180 3.0605 -4.5886 28 1 3.1917 3.1729 -2.0897 29 1 1.6748 4.0754 -2.2318 30 1 2.6576 5.3136 -0.5994 31 1 1.9010 4.0773 0.4357 32 1 4.4333 4.5760 0.8059 33 1 4.6949 3.7056 -0.7183 34 1 3.3142 2.6510 1.7156 35 1 4.9757 2.2937 1.2133 36 1 3.8201 0.0563 1.5682 37 1 3.4754 -0.6703 -0.0197 38 1 5.6665 0.1295 -0.8613 39 1 6.0111 0.8562 0.7266 40 1 5.8723 -0.9114 0.5676 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709988218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:19 Heat of formation + Delta-G solvation = -14.977263 kcal Electronic energy + Delta-G solvation = -17353.108674 eV Core-core repulsion = 14974.034577 eV Total energy + Delta-G solvation = -2379.074096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71384 -36.06659 -35.85605 -33.72178 -31.33533 -30.76629 -28.06452 -25.72699 -25.56524 -23.21430 -22.21457 -21.04217 -19.84184 -17.86765 -17.01719 -16.72410 -16.30009 -15.65487 -15.11057 -14.60691 -14.55529 -14.35620 -13.98650 -13.75577 -13.59778 -12.88901 -12.72333 -12.63909 -12.54179 -12.51222 -12.29498 -12.19968 -11.85879 -11.64914 -11.51397 -11.14611 -11.12689 -11.00689 -10.71263 -10.29777 -10.24944 -8.81155 -7.94446 -5.98118 1.40760 1.44254 1.53383 2.52114 3.19611 3.37979 3.99882 4.12755 4.25045 4.34397 4.41300 4.48707 4.55341 4.64941 4.70748 4.76800 4.79405 4.86098 4.97626 5.04437 5.10407 5.12354 5.17018 5.23652 5.26127 5.39048 5.46402 5.48259 5.52638 5.56564 5.73979 5.79572 5.87368 6.09402 6.25611 6.49588 6.61677 6.73669 7.11444 7.64687 9.12925 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.011322 C = 0.010047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.539545 B = 2472.563326 C = 2786.368247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.105 3.895 4 H 0.018 0.982 5 C 0.066 3.934 6 H -0.011 1.011 7 C -0.479 4.479 8 H 0.058 0.942 9 C 0.005 3.995 10 N -0.927 5.927 11 Si 0.936 3.064 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.291 1.291 15 C -0.082 4.082 16 C -0.111 4.111 17 C -0.105 4.105 18 C 0.058 3.942 19 N -0.530 5.530 20 C 0.042 3.958 21 C -0.140 4.140 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.252 0.748 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -3.220 10.203 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.003 4.003 4 H 0.036 0.964 5 C 0.047 3.953 6 H 0.007 0.993 7 C -0.517 4.517 8 H 0.076 0.924 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.764 3.236 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.217 1.217 15 C -0.121 4.121 16 C -0.149 4.149 17 C -0.143 4.143 18 C -0.069 4.069 19 N -0.255 5.255 20 C -0.086 4.086 21 C -0.197 4.197 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.012 -3.070 9.590 12.270 hybrid contribution -0.737 -0.288 -0.601 0.994 sum 6.275 -3.358 8.988 11.465 Atomic orbital electron populations 1.21676 0.96236 1.00815 1.01166 1.21903 0.96076 0.96459 1.00782 1.21419 0.86866 0.95748 0.96311 0.96399 1.19015 0.92062 0.92121 0.92120 0.99253 1.21537 1.33065 1.01773 0.95352 0.92391 1.25626 0.96309 0.96242 1.00983 1.70091 1.40381 1.21237 1.25177 0.85830 0.77149 0.79950 0.80664 1.19076 1.21417 1.21736 1.21008 0.98224 0.97109 0.95747 1.21360 0.97030 0.98485 0.98025 1.20499 0.96536 0.96804 1.00424 1.21042 1.00359 0.91848 0.93694 1.61636 1.08555 1.03166 1.52139 1.22349 0.96658 0.92043 0.97503 1.21765 0.94596 1.01830 1.01518 0.93621 0.93798 0.92273 0.91747 0.91793 0.93938 0.95705 0.95519 0.93070 0.93605 0.90143 0.92842 0.95359 0.90007 0.94650 0.90612 0.93668 0.92375 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.35 71.98 0.67 -4.54 16 2 C -0.11 -4.24 3.52 30.59 0.11 -4.13 16 3 C 0.11 4.24 1.66 45.77 0.08 4.31 16 4 H 0.02 0.72 6.51 -2.39 -0.02 0.71 16 5 C 0.07 3.26 1.41 -10.74 -0.02 3.25 16 6 H -0.01 -0.59 7.51 -2.39 -0.02 -0.61 16 7 C -0.48 -25.74 6.58 25.60 0.17 -25.57 16 8 H 0.06 3.10 5.62 -2.91 -0.02 3.08 16 9 C 0.00 0.26 5.31 84.66 0.45 0.71 16 10 N -0.93 -55.17 11.75 21.45 0.25 -54.92 16 11 Si 0.94 44.97 29.54 68.60 2.03 47.00 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 C -0.08 -4.02 4.35 30.21 0.13 -3.89 16 16 C -0.11 -4.29 5.59 30.22 0.17 -4.12 16 17 C -0.10 -3.35 5.51 28.85 0.16 -3.19 16 18 C 0.06 1.77 4.78 83.94 0.40 2.17 16 19 N -0.53 -19.08 4.19 -886.10 -3.71 -22.80 16 20 C 0.04 1.24 4.37 86.30 0.38 1.62 16 21 C -0.14 -3.52 9.96 71.98 0.72 -2.80 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.95 6.28 -2.38 -0.01 1.93 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 2.63 5.04 -2.38 -0.01 2.62 16 26 H 0.06 1.99 6.50 -2.39 -0.02 1.98 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.02 1.27 7.20 -2.39 -0.02 1.25 16 29 H 0.03 1.46 6.82 -2.39 -0.02 1.45 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.75 7.16 -2.39 -0.02 1.73 16 32 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.05 1.84 7.58 -2.39 -0.02 1.82 16 34 H 0.03 0.85 7.24 -2.39 -0.02 0.84 16 35 H 0.08 2.12 6.05 -2.39 -0.01 2.10 16 36 H 0.04 0.94 7.88 -2.39 -0.02 0.92 16 37 H 0.08 2.38 5.35 -2.38 -0.01 2.37 16 38 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.06 1.34 6.46 -2.39 -0.02 1.32 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -60.56 285.54 2.97 -57.59 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.99 Total: 9.30 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 3.41 Total: -36.17 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -3.46 Total: -77.72 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -60.56 2.97 -57.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds