Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47323 * 2 1 4 4 H 1.09002 * 110.01385 * 304.32971 * 3 2 1 5 5 C 1.54323 * 109.88741 * 65.44206 * 3 2 1 6 6 H 1.09005 * 110.70517 * 23.30408 * 5 3 2 7 7 C 1.50700 * 110.70707 * 260.07195 * 5 3 2 8 8 H 1.08001 * 119.99950 * 359.97438 * 7 5 3 9 9 C 1.37871 * 119.99974 * 179.97438 * 7 5 3 10 10 N 1.31512 * 120.00241 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 120.00115 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47000 * 60.00056 * 11 9 7 13 13 H 1.48498 * 109.47498 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46918 * 300.00244 * 11 9 7 15 15 C 1.55137 * 103.01663 * 141.68504 * 5 3 2 16 16 C 1.54904 * 101.65640 * 324.34918 * 15 5 3 17 17 N 1.47440 * 109.88867 * 183.20835 * 3 2 1 18 18 C 1.46903 * 110.99766 * 3.85547 * 17 3 2 19 19 C 1.53002 * 109.46914 * 160.58592 * 18 17 3 20 20 C 1.53001 * 109.46950 * 69.26756 * 19 18 17 21 21 C 1.53000 * 109.47093 * 189.26964 * 19 18 17 22 22 H 1.08997 * 109.47799 * 183.51770 * 1 2 3 23 23 H 1.09001 * 109.47217 * 303.51930 * 1 2 3 24 24 H 1.09008 * 109.47022 * 63.51665 * 1 2 3 25 25 H 1.09007 * 109.46778 * 239.99966 * 2 1 3 26 26 H 1.08995 * 109.46591 * 120.00188 * 2 1 3 27 27 H 0.97004 * 120.00642 * 179.97438 * 10 9 7 28 28 H 1.09005 * 110.98756 * 82.44571 * 15 5 3 29 29 H 1.09002 * 110.99040 * 206.21369 * 15 5 3 30 30 H 1.08998 * 110.37122 * 278.24042 * 16 15 5 31 31 H 1.08998 * 110.37158 * 155.89732 * 16 15 5 32 32 H 1.09003 * 109.46948 * 40.59044 * 18 17 3 33 33 H 1.08991 * 109.47329 * 280.58820 * 18 17 3 34 34 H 1.08996 * 109.47445 * 309.26868 * 19 18 17 35 35 H 1.08999 * 109.47031 * 47.89809 * 20 19 18 36 36 H 1.09000 * 109.46833 * 167.89714 * 20 19 18 37 37 H 1.09000 * 109.47011 * 287.89440 * 20 19 18 38 38 H 1.08999 * 109.47535 * 59.99654 * 21 19 18 39 39 H 1.09007 * 109.47056 * 180.02562 * 21 19 18 40 40 H 1.09008 * 109.47103 * 299.99846 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6199 1.9867 -0.8458 5 6 1.6464 2.1385 1.3199 6 1 1.4757 1.4039 2.1070 7 6 0.4284 3.0038 1.1234 8 1 -0.0385 3.0663 0.1515 9 6 -0.0898 3.7158 2.1842 10 7 0.4784 3.6393 3.3678 11 14 -1.5992 4.7890 1.9405 12 1 -2.7352 3.9490 1.4830 13 1 -1.9535 5.4443 3.2251 14 1 -1.3086 5.8273 0.9193 15 6 2.8908 3.0074 1.6413 16 6 4.0431 2.1012 1.1410 17 7 3.5124 1.4539 -0.0776 18 6 4.0424 0.0916 -0.2234 19 6 5.4678 0.1554 -0.7759 20 6 6.4007 0.7405 0.2862 21 6 5.9353 -1.2540 -1.1449 22 1 -0.3634 -1.0257 0.0630 23 1 -0.3634 0.5675 0.8568 24 1 -0.3633 0.4583 -0.9199 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 0.1140 4.1405 4.1141 28 1 2.8644 3.9466 1.0886 29 1 2.9736 3.1897 2.7128 30 1 4.2896 1.3511 1.8925 31 1 4.9206 2.7013 0.9004 32 1 3.4113 -0.4722 -0.9105 33 1 4.0513 -0.4009 0.7489 34 1 5.4855 0.7879 -1.6634 35 1 6.2251 0.2411 1.2390 36 1 7.4367 0.5899 -0.0175 37 1 6.2050 1.8074 0.3936 38 1 5.2706 -1.6709 -1.9015 39 1 6.9509 -1.2086 -1.5381 40 1 5.9176 -1.8866 -0.2574 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709991133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -12.919761 kcal Electronic energy + Delta-G solvation = -16756.391825 eV Core-core repulsion = 14377.406948 eV Total energy + Delta-G solvation = -2378.984877 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.05648 -35.45564 -32.77525 -32.39058 -29.97121 -27.60025 -26.59990 -25.25273 -23.96213 -22.02487 -20.02138 -19.78166 -18.28396 -16.56367 -15.32114 -14.71804 -14.61162 -14.48712 -13.70407 -13.33586 -12.97470 -12.84118 -12.43108 -12.17698 -11.94624 -11.56397 -11.46494 -11.08509 -11.00627 -10.83341 -10.78384 -10.61495 -10.46472 -10.41644 -10.26746 -9.89926 -9.76767 -9.48059 -9.00260 -8.81524 -8.34395 -7.45905 -5.99366 -4.00657 3.33444 3.38220 3.40988 4.45343 4.68580 5.14675 5.19586 5.31625 5.38115 5.66136 5.71036 5.76305 5.82045 5.91868 5.97462 6.00237 6.02752 6.16427 6.19076 6.21774 6.31826 6.37903 6.45964 6.53572 6.57056 6.65599 6.70630 6.82486 6.93756 7.16708 7.26419 7.31624 7.65390 7.70599 7.94106 7.96851 8.06533 8.46786 9.00479 9.62305 11.10632 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039712 B = 0.007595 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.915616 B = 3685.654795 C = 4155.462737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.073 3.927 4 H 0.076 0.924 5 C 0.046 3.954 6 H 0.031 0.969 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.111 4.111 16 C 0.037 3.963 17 N -0.529 5.529 18 C 0.046 3.954 19 C -0.092 4.092 20 C -0.152 4.152 21 C -0.144 4.144 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -7.013 -5.629 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.035 4.035 4 H 0.094 0.906 5 C 0.026 3.974 6 H 0.049 0.951 7 C -0.542 4.542 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.149 4.149 16 C -0.090 4.090 17 N -0.252 5.252 18 C -0.082 4.082 19 C -0.111 4.111 20 C -0.209 4.209 21 C -0.202 4.202 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.424 -6.665 -5.879 11.580 hybrid contribution -1.038 0.134 0.720 1.270 sum 6.386 -6.531 -5.158 10.490 Atomic orbital electron populations 1.21743 0.95507 0.99876 1.03398 1.22074 0.96828 0.97922 0.99883 1.22686 0.85227 0.94259 1.01297 0.90640 1.19828 0.93338 0.93708 0.90488 0.95093 1.21015 1.11188 1.26437 0.95522 0.92572 1.24959 0.96931 0.96742 0.95272 1.69948 1.40522 1.42050 1.00477 0.86728 0.83554 0.80898 0.77238 1.20322 1.21456 1.20297 1.22685 0.94056 0.97838 1.00351 1.23336 0.98626 0.97138 0.89899 1.63671 1.07409 1.16352 1.37741 1.22532 0.94845 0.91423 0.99402 1.21108 0.94965 0.95985 0.99065 1.22087 0.98133 1.02197 0.98474 1.21817 1.00522 0.96932 1.00940 0.94660 0.90118 0.93444 0.92977 0.93089 0.93086 0.92644 0.91451 0.95092 0.91859 0.90548 0.95217 0.90752 0.93341 0.93764 0.91383 0.92959 0.93048 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.60 37.16 0.36 -2.34 16 2 C -0.13 -2.36 4.06 -26.73 -0.11 -2.47 16 3 C 0.07 1.52 3.08 -66.72 -0.21 1.31 16 4 H 0.08 1.69 7.63 -51.93 -0.40 1.29 16 5 C 0.05 1.11 1.65 -89.95 -0.15 0.96 16 6 H 0.03 0.83 7.79 -51.93 -0.40 0.43 16 7 C -0.50 -13.41 7.22 -34.44 -0.25 -13.66 16 8 H 0.06 1.49 7.53 -52.49 -0.40 1.09 16 9 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 10 N -0.89 -25.40 12.49 55.43 0.69 -24.71 16 11 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 C -0.11 -2.59 5.94 -24.60 -0.15 -2.74 16 16 C 0.04 0.73 5.02 -2.30 -0.01 0.72 16 17 N -0.53 -10.07 5.10 -223.36 -1.14 -11.21 16 18 C 0.05 0.74 3.47 -3.82 -0.01 0.73 16 19 C -0.09 -1.26 3.10 -90.62 -0.28 -1.55 16 20 C -0.15 -2.02 8.03 37.16 0.30 -1.73 16 21 C -0.14 -1.63 9.15 37.16 0.34 -1.29 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.72 6.47 -51.93 -0.34 1.38 16 24 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 25 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 26 H 0.05 0.95 7.40 -51.93 -0.38 0.57 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 1.36 8.04 -51.93 -0.42 0.94 16 29 H 0.07 1.69 7.76 -51.93 -0.40 1.29 16 30 H 0.03 0.60 7.13 -51.93 -0.37 0.23 16 31 H 0.06 1.15 6.10 -51.93 -0.32 0.83 16 32 H 0.08 1.19 5.31 -51.93 -0.28 0.91 16 33 H 0.03 0.50 7.04 -51.93 -0.37 0.13 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.65 7.81 -51.93 -0.41 0.25 16 36 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.07 0.98 5.34 -51.93 -0.28 0.70 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -27.10 296.71 -8.41 -35.51 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.15 Total: 0.22 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.26 Total: -20.44 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.45 Total: -35.92 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.10 -8.41 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709991133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.587 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds