Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47323 * 2 1 4 4 H 1.09002 * 110.01385 * 304.32971 * 3 2 1 5 5 C 1.54323 * 109.88741 * 65.44206 * 3 2 1 6 6 H 1.09005 * 110.70517 * 23.30408 * 5 3 2 7 7 C 1.50700 * 110.70707 * 260.07195 * 5 3 2 8 8 H 1.08001 * 119.99950 * 359.97438 * 7 5 3 9 9 C 1.37871 * 119.99974 * 179.97438 * 7 5 3 10 10 N 1.31512 * 120.00241 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 120.00115 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47000 * 60.00056 * 11 9 7 13 13 H 1.48498 * 109.47498 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46918 * 300.00244 * 11 9 7 15 15 C 1.55137 * 103.01663 * 141.68504 * 5 3 2 16 16 C 1.54904 * 101.65640 * 324.34918 * 15 5 3 17 17 N 1.47440 * 109.88867 * 183.20835 * 3 2 1 18 18 C 1.46903 * 110.99766 * 3.85547 * 17 3 2 19 19 C 1.53002 * 109.46914 * 160.58592 * 18 17 3 20 20 C 1.53001 * 109.46950 * 69.26756 * 19 18 17 21 21 C 1.53000 * 109.47093 * 189.26964 * 19 18 17 22 22 H 1.08997 * 109.47799 * 183.51770 * 1 2 3 23 23 H 1.09001 * 109.47217 * 303.51930 * 1 2 3 24 24 H 1.09008 * 109.47022 * 63.51665 * 1 2 3 25 25 H 1.09007 * 109.46778 * 239.99966 * 2 1 3 26 26 H 1.08995 * 109.46591 * 120.00188 * 2 1 3 27 27 H 0.97004 * 120.00642 * 179.97438 * 10 9 7 28 28 H 1.09005 * 110.98756 * 82.44571 * 15 5 3 29 29 H 1.09002 * 110.99040 * 206.21369 * 15 5 3 30 30 H 1.08998 * 110.37122 * 278.24042 * 16 15 5 31 31 H 1.08998 * 110.37158 * 155.89732 * 16 15 5 32 32 H 1.09003 * 109.46948 * 40.59044 * 18 17 3 33 33 H 1.08991 * 109.47329 * 280.58820 * 18 17 3 34 34 H 1.08996 * 109.47445 * 309.26868 * 19 18 17 35 35 H 1.08999 * 109.47031 * 47.89809 * 20 19 18 36 36 H 1.09000 * 109.46833 * 167.89714 * 20 19 18 37 37 H 1.09000 * 109.47011 * 287.89440 * 20 19 18 38 38 H 1.08999 * 109.47535 * 59.99654 * 21 19 18 39 39 H 1.09007 * 109.47056 * 180.02562 * 21 19 18 40 40 H 1.09008 * 109.47103 * 299.99846 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6199 1.9867 -0.8458 5 6 1.6464 2.1385 1.3199 6 1 1.4757 1.4039 2.1070 7 6 0.4284 3.0038 1.1234 8 1 -0.0385 3.0663 0.1515 9 6 -0.0898 3.7158 2.1842 10 7 0.4784 3.6393 3.3678 11 14 -1.5992 4.7890 1.9405 12 1 -2.7352 3.9490 1.4830 13 1 -1.9535 5.4443 3.2251 14 1 -1.3086 5.8273 0.9193 15 6 2.8908 3.0074 1.6413 16 6 4.0431 2.1012 1.1410 17 7 3.5124 1.4539 -0.0776 18 6 4.0424 0.0916 -0.2234 19 6 5.4678 0.1554 -0.7759 20 6 6.4007 0.7405 0.2862 21 6 5.9353 -1.2540 -1.1449 22 1 -0.3634 -1.0257 0.0630 23 1 -0.3634 0.5675 0.8568 24 1 -0.3633 0.4583 -0.9199 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 0.1140 4.1405 4.1141 28 1 2.8644 3.9466 1.0886 29 1 2.9736 3.1897 2.7128 30 1 4.2896 1.3511 1.8925 31 1 4.9206 2.7013 0.9004 32 1 3.4113 -0.4722 -0.9105 33 1 4.0513 -0.4009 0.7489 34 1 5.4855 0.7879 -1.6634 35 1 6.2251 0.2411 1.2390 36 1 7.4367 0.5899 -0.0175 37 1 6.2050 1.8074 0.3936 38 1 5.2706 -1.6709 -1.9015 39 1 6.9509 -1.2086 -1.5381 40 1 5.9176 -1.8866 -0.2574 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709991133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -28.272474 kcal Electronic energy + Delta-G solvation = -16757.057568 eV Core-core repulsion = 14377.406948 eV Total energy + Delta-G solvation = -2379.650620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63968 -36.77276 -34.68719 -33.97450 -31.67720 -29.12725 -27.85053 -26.86676 -25.60048 -23.65553 -21.72865 -21.13640 -19.82688 -18.55328 -16.87652 -16.43136 -16.16276 -16.07240 -15.24796 -14.66068 -14.48622 -14.18869 -13.90631 -13.68049 -13.20580 -13.11854 -12.89922 -12.84349 -12.71079 -12.52816 -12.35250 -12.23312 -12.04362 -11.87910 -11.62871 -11.36409 -11.25953 -11.11639 -10.86069 -10.72860 -10.41736 -9.02825 -8.10251 -6.17203 1.41908 1.42845 1.50005 2.44518 3.21052 3.21659 3.95468 4.05447 4.09917 4.20242 4.32502 4.39772 4.46405 4.55310 4.67663 4.72779 4.74612 4.81741 4.87867 4.98267 5.00799 5.04449 5.11015 5.13513 5.16886 5.20895 5.32681 5.39113 5.49622 5.56689 5.59751 5.61364 5.65292 5.76718 5.94428 6.26534 6.41535 6.47199 6.90578 7.48614 8.99198 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039712 B = 0.007595 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.915616 B = 3685.654795 C = 4155.462737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.061 0.939 5 C 0.044 3.956 6 H -0.001 1.001 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.923 5.923 11 Si 0.948 3.052 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.273 1.273 15 C -0.109 4.109 16 C 0.053 3.947 17 N -0.531 5.531 18 C 0.046 3.954 19 C -0.089 4.089 20 C -0.151 4.151 21 C -0.139 4.139 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.258 0.742 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.933 -8.134 -7.165 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.029 4.029 4 H 0.079 0.921 5 C 0.025 3.975 6 H 0.017 0.983 7 C -0.549 4.549 8 H 0.072 0.928 9 C -0.186 4.186 10 N -0.563 5.563 11 Si 0.774 3.226 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.147 4.147 16 C -0.074 4.074 17 N -0.254 5.254 18 C -0.082 4.082 19 C -0.108 4.108 20 C -0.208 4.208 21 C -0.197 4.197 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.083 -7.795 -7.430 13.465 hybrid contribution -1.221 0.466 1.197 1.772 sum 6.862 -7.329 -6.233 11.817 Atomic orbital electron populations 1.21675 0.95528 1.00996 1.01898 1.22011 0.96745 0.96222 1.00990 1.22470 0.86632 0.95451 0.98365 0.92096 1.19730 0.93143 0.93132 0.91542 0.98296 1.21311 1.11905 1.26401 0.95312 0.92841 1.25698 0.99695 0.98128 0.95072 1.70077 1.41958 1.43079 1.01142 0.85765 0.80416 0.79295 0.77126 1.19520 1.21328 1.19810 1.22522 0.95828 0.97801 0.98599 1.23202 0.97511 0.96579 0.90144 1.63686 1.06166 1.18520 1.37023 1.22649 0.96549 0.89473 0.99510 1.21085 0.93326 0.97682 0.98699 1.22058 0.99335 1.01097 0.98286 1.21771 1.01507 0.95071 1.01337 0.91942 0.93801 0.92963 0.90088 0.93507 0.93270 0.94347 0.93972 0.94808 0.90004 0.89593 0.95758 0.91205 0.93749 0.91765 0.92792 0.92224 0.91531 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.60 71.98 0.69 -4.41 16 2 C -0.12 -4.29 4.06 30.59 0.12 -4.17 16 3 C 0.08 3.26 3.08 45.26 0.14 3.40 16 4 H 0.06 2.71 7.63 -2.39 -0.02 2.69 16 5 C 0.04 2.20 1.65 -10.36 -0.02 2.18 16 6 H 0.00 -0.06 7.79 -2.38 -0.02 -0.08 16 7 C -0.51 -27.89 7.22 25.60 0.18 -27.71 16 8 H 0.05 2.88 7.53 -2.91 -0.02 2.86 16 9 C 0.01 0.69 5.36 84.65 0.45 1.14 16 10 N -0.92 -54.19 12.49 21.44 0.27 -53.92 16 11 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C -0.11 -5.26 5.94 31.98 0.19 -5.07 16 16 C 0.05 2.06 5.02 86.77 0.44 2.49 16 17 N -0.53 -19.65 5.10 -860.57 -4.39 -24.04 16 18 C 0.05 1.37 3.47 86.30 0.30 1.67 16 19 C -0.09 -2.19 3.10 -10.79 -0.03 -2.23 16 20 C -0.15 -3.66 8.03 71.98 0.58 -3.08 16 21 C -0.14 -2.66 9.15 71.98 0.66 -2.00 16 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.04 1.88 6.47 -2.39 -0.02 1.86 16 24 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.08 2.42 5.99 -2.38 -0.01 2.40 16 26 H 0.05 1.69 7.40 -2.39 -0.02 1.67 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.04 1.94 8.04 -2.38 -0.02 1.92 16 29 H 0.04 2.20 7.76 -2.39 -0.02 2.19 16 30 H 0.03 1.29 7.13 -2.39 -0.02 1.27 16 31 H 0.08 2.89 6.10 -2.39 -0.01 2.88 16 32 H 0.09 2.41 5.31 -2.39 -0.01 2.39 16 33 H 0.02 0.76 7.04 -2.39 -0.02 0.75 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.10 7.81 -2.39 -0.02 1.09 16 36 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 37 H 0.05 1.45 5.34 -2.39 -0.01 1.43 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -59.01 296.71 2.59 -56.42 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.98 Total: 13.27 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 3.70 Total: -37.77 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -4.12 Total: -77.96 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -59.01 2.59 -56.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709991133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.144 kcal (2) G-P(sol) polarization free energy of solvation -59.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds