Wall clock time and date at job start Mon Mar 30 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46893 * 2 1 4 4 C 1.52998 * 109.47362 * 120.01062 * 2 1 3 5 5 H 1.08996 * 109.47259 * 59.99429 * 4 2 1 6 6 N 1.46898 * 109.46733 * 299.99550 * 4 2 1 7 7 C 1.46906 * 110.99888 * 155.00124 * 6 4 2 8 8 C 1.52999 * 109.46897 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46953 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46691 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46740 * 119.99592 * 13 11 9 16 16 H 1.48497 * 109.47025 * 239.99950 * 13 11 9 17 17 C 1.52995 * 109.46959 * 179.97438 * 4 2 1 18 18 C 1.52996 * 109.47141 * 299.99734 * 17 4 2 19 19 C 1.52997 * 109.47347 * 60.00218 * 18 17 4 20 20 C 1.53004 * 109.46854 * 299.99842 * 19 18 17 21 21 H 1.08990 * 109.47208 * 300.00165 * 20 19 18 22 22 C 1.52998 * 109.46991 * 179.97438 * 20 19 18 23 23 H 1.09006 * 109.46757 * 299.98960 * 1 2 3 24 24 H 1.08997 * 109.47325 * 59.99070 * 1 2 3 25 25 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 26 26 H 1.00902 * 111.00533 * 31.04531 * 6 4 2 27 27 H 1.09000 * 109.47033 * 300.00113 * 7 6 4 28 28 H 1.09001 * 109.46544 * 60.00058 * 7 6 4 29 29 H 1.09000 * 109.47486 * 299.99976 * 8 7 6 30 30 H 1.09001 * 109.47362 * 60.00699 * 8 7 6 31 31 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47229 * 59.99993 * 17 4 2 33 33 H 1.09000 * 109.47371 * 179.97438 * 17 4 2 34 34 H 1.09007 * 109.47009 * 180.02562 * 18 17 4 35 35 H 1.09002 * 109.47270 * 300.00234 * 18 17 4 36 36 H 1.08996 * 109.47026 * 60.00239 * 19 18 17 37 37 H 1.09002 * 109.47093 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47166 * 60.00326 * 22 20 19 39 39 H 1.08997 * 109.47274 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.47662 * 300.00765 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7215 1.2491 5 1 1.6767 -1.7491 1.2490 6 7 1.5505 -0.0291 2.4486 7 6 1.4877 -0.9443 3.5960 8 6 0.9753 -0.1886 4.8236 9 6 0.9115 -1.1274 6.0009 10 1 1.2073 -2.1596 5.8850 11 6 0.4754 -0.6686 7.2257 12 7 0.1157 0.5885 7.3669 13 14 0.3957 -1.8324 8.6847 14 1 0.8519 -3.1822 8.2666 15 1 1.2752 -1.3271 9.7694 16 1 -1.0026 -1.9126 9.1780 17 6 3.5700 -0.7220 1.2487 18 6 4.0794 -1.4434 -0.0007 19 6 3.5694 -0.7220 -1.2498 20 6 2.0394 -0.7215 -1.2494 21 1 1.6758 -1.7490 -1.2493 22 6 1.5293 0.0004 -2.4982 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.6529 0.3990 2.2780 27 1 0.8113 -1.7679 3.3672 28 1 2.4832 -1.3380 3.8014 29 1 1.6520 0.6347 5.0522 30 1 -0.0201 0.2054 4.6184 31 1 -0.1907 0.9115 8.2287 32 1 3.9337 0.3056 1.2486 33 1 3.9335 -1.2355 2.1387 34 1 5.1695 -1.4441 -0.0007 35 1 3.7157 -2.4709 -0.0006 36 1 3.9332 0.3055 -1.2499 37 1 3.9320 -1.2363 -2.1399 38 1 1.8923 -0.5132 -3.3885 39 1 0.4394 0.0012 -2.4977 40 1 1.8931 1.0280 -2.4980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020055213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:04 Heat of formation + Delta-G solvation = -42.226694 kcal Electronic energy + Delta-G solvation = -16015.863674 eV Core-core repulsion = 13635.607953 eV Total energy + Delta-G solvation = -2380.255721 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40061 -35.36836 -33.02445 -32.96767 -30.90616 -28.33598 -26.75226 -25.42757 -23.86417 -21.07888 -20.88633 -20.17974 -19.49890 -16.28854 -15.50487 -14.95860 -14.63814 -14.48797 -14.33797 -13.95872 -13.50495 -12.84869 -12.67886 -12.50812 -12.11976 -11.93135 -11.77090 -11.66627 -11.32857 -11.11508 -10.92726 -10.89129 -10.73439 -10.54829 -10.40312 -10.12762 -9.88957 -9.75845 -9.26537 -9.07554 -8.32827 -7.71018 -5.97165 -3.99452 3.32739 3.39939 3.44229 4.44018 4.57735 4.72082 4.75577 4.98392 5.14267 5.26335 5.38828 5.43275 5.47471 5.50079 5.56629 5.60184 5.75532 5.79427 5.84459 5.94714 5.98535 6.03712 6.12473 6.21386 6.26005 6.38234 6.41515 6.43153 6.48225 6.51526 6.68257 7.05457 7.58466 7.78767 7.88872 8.05395 8.14356 8.47793 9.08193 9.64231 11.14370 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048829 B = 0.005032 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.297555 B = 5563.566362 C = 5878.899367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 H 0.076 0.924 4 C 0.092 3.908 5 H 0.036 0.964 6 N -0.690 5.690 7 C 0.067 3.933 8 C 0.025 3.975 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.085 4.085 21 H 0.066 0.934 22 C -0.148 4.148 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.336 0.664 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -2.045 -18.146 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.018 4.018 5 H 0.053 0.947 6 N -0.323 5.323 7 C -0.061 4.061 8 C -0.013 4.013 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.104 4.104 21 H 0.085 0.915 22 C -0.205 4.205 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.156 0.844 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.566 -1.673 -17.834 18.485 hybrid contribution -0.875 -1.144 0.723 1.612 sum 3.691 -2.817 -17.111 17.730 Atomic orbital electron populations 1.21965 0.95637 1.01736 1.01902 1.21296 0.95203 1.00186 0.93852 0.90548 1.21483 0.95097 0.95605 0.89590 0.94653 1.60647 1.33374 1.34185 1.04093 1.22170 0.99404 0.93496 0.91037 1.19074 0.96160 0.95811 0.90229 1.21229 1.43666 0.96382 0.94591 0.92762 1.25001 0.95454 0.95081 0.98831 1.69984 1.44661 1.14350 1.24314 0.86543 0.77606 0.81160 0.82734 1.19782 1.20980 1.21045 1.21517 0.95141 1.00978 0.96885 1.21543 0.99940 0.99330 0.94916 1.21590 0.95084 1.00774 0.97573 1.21134 0.95335 0.99515 0.94413 0.91508 1.21883 1.01134 1.00412 0.97070 0.92117 0.92345 0.92976 0.84385 0.96906 0.92481 0.95686 0.96929 0.93083 0.91525 0.91983 0.92193 0.92401 0.91981 0.92473 0.93085 0.92437 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.60 37.16 0.32 -1.53 16 2 C -0.09 -1.08 1.91 -90.62 -0.17 -1.25 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.09 1.39 1.97 -67.72 -0.13 1.26 16 5 H 0.04 0.57 7.80 -51.93 -0.40 0.16 16 6 N -0.69 -12.73 6.31 -106.73 -0.67 -13.40 16 7 C 0.07 1.47 5.42 -3.82 -0.02 1.45 16 8 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 9 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 13 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C -0.11 -1.52 5.43 -26.74 -0.15 -1.66 16 18 C -0.12 -1.36 5.92 -26.73 -0.16 -1.51 16 19 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 20 C -0.08 -0.90 2.25 -90.62 -0.20 -1.10 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 23 H 0.06 0.79 6.21 -51.93 -0.32 0.46 16 24 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.34 6.03 6.17 -39.29 -0.24 5.78 16 27 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 28 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.97 7.45 -51.93 -0.39 0.58 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -29.85 305.53 -8.68 -38.53 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.44 Total: -0.15 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.88 Total: -19.93 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.06 Total: -39.99 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.85 -8.68 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.698 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds