Wall clock time and date at job start Mon Mar 30 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46893 * 2 1 4 4 C 1.52998 * 109.47362 * 120.01062 * 2 1 3 5 5 H 1.08996 * 109.47259 * 59.99429 * 4 2 1 6 6 N 1.46898 * 109.46733 * 299.99550 * 4 2 1 7 7 C 1.46906 * 110.99888 * 155.00124 * 6 4 2 8 8 C 1.52999 * 109.46897 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46953 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46691 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46740 * 119.99592 * 13 11 9 16 16 H 1.48497 * 109.47025 * 239.99950 * 13 11 9 17 17 C 1.52995 * 109.46959 * 179.97438 * 4 2 1 18 18 C 1.52996 * 109.47141 * 299.99734 * 17 4 2 19 19 C 1.52997 * 109.47347 * 60.00218 * 18 17 4 20 20 C 1.53004 * 109.46854 * 299.99842 * 19 18 17 21 21 H 1.08990 * 109.47208 * 300.00165 * 20 19 18 22 22 C 1.52998 * 109.46991 * 179.97438 * 20 19 18 23 23 H 1.09006 * 109.46757 * 299.98960 * 1 2 3 24 24 H 1.08997 * 109.47325 * 59.99070 * 1 2 3 25 25 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 26 26 H 1.00902 * 111.00533 * 31.04531 * 6 4 2 27 27 H 1.09000 * 109.47033 * 300.00113 * 7 6 4 28 28 H 1.09001 * 109.46544 * 60.00058 * 7 6 4 29 29 H 1.09000 * 109.47486 * 299.99976 * 8 7 6 30 30 H 1.09001 * 109.47362 * 60.00699 * 8 7 6 31 31 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47229 * 59.99993 * 17 4 2 33 33 H 1.09000 * 109.47371 * 179.97438 * 17 4 2 34 34 H 1.09007 * 109.47009 * 180.02562 * 18 17 4 35 35 H 1.09002 * 109.47270 * 300.00234 * 18 17 4 36 36 H 1.08996 * 109.47026 * 60.00239 * 19 18 17 37 37 H 1.09002 * 109.47093 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47166 * 60.00326 * 22 20 19 39 39 H 1.08997 * 109.47274 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.47662 * 300.00765 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7215 1.2491 5 1 1.6767 -1.7491 1.2490 6 7 1.5505 -0.0291 2.4486 7 6 1.4877 -0.9443 3.5960 8 6 0.9753 -0.1886 4.8236 9 6 0.9115 -1.1274 6.0009 10 1 1.2073 -2.1596 5.8850 11 6 0.4754 -0.6686 7.2257 12 7 0.1157 0.5885 7.3669 13 14 0.3957 -1.8324 8.6847 14 1 0.8519 -3.1822 8.2666 15 1 1.2752 -1.3271 9.7694 16 1 -1.0026 -1.9126 9.1780 17 6 3.5700 -0.7220 1.2487 18 6 4.0794 -1.4434 -0.0007 19 6 3.5694 -0.7220 -1.2498 20 6 2.0394 -0.7215 -1.2494 21 1 1.6758 -1.7490 -1.2493 22 6 1.5293 0.0004 -2.4982 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.6529 0.3990 2.2780 27 1 0.8113 -1.7679 3.3672 28 1 2.4832 -1.3380 3.8014 29 1 1.6520 0.6347 5.0522 30 1 -0.0201 0.2054 4.6184 31 1 -0.1907 0.9115 8.2287 32 1 3.9337 0.3056 1.2486 33 1 3.9335 -1.2355 2.1387 34 1 5.1695 -1.4441 -0.0007 35 1 3.7157 -2.4709 -0.0006 36 1 3.9332 0.3055 -1.2499 37 1 3.9320 -1.2363 -2.1399 38 1 1.8923 -0.5132 -3.3885 39 1 0.4394 0.0012 -2.4977 40 1 1.8931 1.0280 -2.4980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020055213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:04 Heat of formation + Delta-G solvation = -59.714492 kcal Electronic energy + Delta-G solvation = -16016.622002 eV Core-core repulsion = 13635.607953 eV Total energy + Delta-G solvation = -2381.014048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47483 -36.90494 -34.98742 -33.96873 -32.46860 -29.92694 -27.84015 -26.57054 -25.66620 -22.65691 -22.04559 -21.45591 -20.54743 -18.51331 -16.97785 -16.42581 -16.06873 -15.67158 -15.48949 -15.19697 -14.81173 -14.37116 -14.17501 -13.76653 -13.42528 -13.17774 -12.94902 -12.91037 -12.66886 -12.58657 -12.43847 -12.24560 -12.15477 -11.78108 -11.71584 -11.49489 -11.34357 -11.28494 -10.85452 -10.75599 -10.58398 -9.25682 -8.21709 -6.33582 1.39198 1.39980 1.53399 2.39544 3.11545 3.29102 3.74149 3.80550 3.94782 4.19281 4.26795 4.44262 4.47582 4.49817 4.56673 4.57268 4.63608 4.71534 4.79680 4.90116 4.99899 5.02265 5.04693 5.12446 5.15819 5.20809 5.27029 5.35365 5.37107 5.40983 5.45525 5.55873 5.63648 5.67462 5.78772 6.15478 6.32075 6.59078 6.83565 7.35865 8.90788 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048829 B = 0.005032 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.297555 B = 5563.566362 C = 5878.899367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.071 0.929 4 C 0.091 3.909 5 H 0.029 0.971 6 N -0.696 5.696 7 C 0.087 3.913 8 C 0.032 3.968 9 C -0.545 4.545 10 H 0.059 0.941 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.276 1.276 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.082 4.082 21 H 0.066 0.934 22 C -0.144 4.144 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.338 0.662 27 H 0.013 0.987 28 H 0.054 0.946 29 H -0.006 1.006 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -3.163 -19.361 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.019 4.019 5 H 0.047 0.953 6 N -0.329 5.329 7 C -0.042 4.042 8 C -0.005 4.005 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.101 4.101 21 H 0.084 0.916 22 C -0.201 4.201 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.158 0.842 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.905 -2.794 -19.073 19.890 hybrid contribution -0.976 -0.748 1.083 1.639 sum 3.930 -3.542 -17.989 18.751 Atomic orbital electron populations 1.21957 0.95276 1.01745 1.02124 1.21252 0.95489 0.99728 0.93475 0.91081 1.21609 0.95720 0.95232 0.89290 0.95296 1.60594 1.33641 1.33910 1.04748 1.21768 0.98717 0.93178 0.90530 1.18920 0.94276 0.95063 0.92243 1.21631 1.44087 0.96912 0.95738 0.92319 1.25982 0.94659 0.96883 1.02137 1.70115 1.45214 1.16414 1.25421 0.85353 0.77974 0.78997 0.78433 1.18639 1.20231 1.20155 1.21510 0.94385 1.00767 0.97807 1.21511 1.00687 0.99070 0.93923 1.21589 0.94668 1.00914 0.97560 1.21117 0.95680 0.99335 0.93942 0.91580 1.21851 1.01302 1.00420 0.96573 0.93694 0.90305 0.93059 0.84172 0.96850 0.92786 0.98802 0.99137 0.92687 0.92208 0.93970 0.90954 0.92233 0.91894 0.90447 0.91680 0.92182 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.60 71.98 0.62 -2.90 16 2 C -0.08 -1.92 1.91 -10.79 -0.02 -1.94 16 3 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.09 2.73 1.97 44.91 0.09 2.82 16 5 H 0.03 0.92 7.80 -2.39 -0.02 0.90 16 6 N -0.70 -26.27 6.31 -491.58 -3.10 -29.37 16 7 C 0.09 3.90 5.42 86.30 0.47 4.37 16 8 C 0.03 1.80 5.23 29.85 0.16 1.96 16 9 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 11 C 0.00 0.08 5.46 84.65 0.46 0.54 16 12 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 13 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C -0.11 -2.99 5.43 30.59 0.17 -2.82 16 18 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 19 C -0.11 -1.95 5.20 30.59 0.16 -1.79 16 20 C -0.08 -1.54 2.25 -10.79 -0.02 -1.56 16 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 22 C -0.14 -2.18 8.84 71.98 0.64 -1.54 16 23 H 0.04 1.16 6.21 -2.38 -0.01 1.15 16 24 H 0.08 1.48 6.43 -2.39 -0.02 1.46 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.34 12.48 6.17 -89.69 -0.55 11.92 16 27 H 0.01 0.59 8.06 -2.39 -0.02 0.57 16 28 H 0.05 2.43 7.44 -2.39 -0.02 2.42 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.33 7.45 -2.39 -0.02 1.31 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -64.44 305.53 2.76 -61.68 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.42 Total: 15.25 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.13 Total: -36.99 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.82 Total: -87.03 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.44 2.76 -61.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.966 kcal (2) G-P(sol) polarization free energy of solvation -64.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds