Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46866 * 2 1 4 4 C 1.50696 * 109.47496 * 119.99578 * 2 1 3 5 5 H 1.07998 * 119.99729 * 119.99384 * 4 2 1 6 6 C 1.37882 * 120.00242 * 300.00607 * 4 2 1 7 7 N 1.31506 * 120.00253 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99525 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47222 * 90.00283 * 8 6 4 10 10 H 1.48502 * 109.46902 * 210.00045 * 8 6 4 11 11 H 1.48497 * 109.47356 * 330.00019 * 8 6 4 12 12 N 1.46896 * 109.47270 * 240.00233 * 2 1 3 13 13 C 1.46902 * 111.00004 * 185.96102 * 12 2 1 14 14 C 1.46897 * 111.00486 * 62.00325 * 12 2 1 15 15 H 1.09002 * 109.46891 * 329.87595 * 14 12 2 16 16 C 1.53003 * 109.47224 * 89.87708 * 14 12 2 17 17 C 1.52998 * 109.47219 * 180.02562 * 16 14 12 18 18 C 1.53007 * 109.46917 * 299.99493 * 17 16 14 19 19 C 1.53003 * 109.46762 * 60.00227 * 18 17 16 20 20 C 1.52996 * 109.47663 * 209.87719 * 14 12 2 21 21 H 1.09003 * 109.47137 * 59.99403 * 20 14 12 22 22 C 1.53002 * 109.46958 * 300.00209 * 20 14 12 23 23 H 1.09001 * 109.46739 * 52.06480 * 1 2 3 24 24 H 1.08998 * 109.46793 * 172.06570 * 1 2 3 25 25 H 1.09000 * 109.46853 * 292.06926 * 1 2 3 26 26 H 0.96999 * 120.00557 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47406 * 68.62757 * 13 12 2 28 28 H 1.09005 * 109.46649 * 188.62530 * 13 12 2 29 29 H 1.09003 * 109.47040 * 308.62055 * 13 12 2 30 30 H 1.09011 * 109.46619 * 300.00264 * 16 14 12 31 31 H 1.08992 * 109.47250 * 60.00189 * 16 14 12 32 32 H 1.09007 * 109.47033 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.47400 * 59.99579 * 17 16 14 34 34 H 1.08992 * 109.47222 * 300.00229 * 18 17 16 35 35 H 1.08993 * 109.46909 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47108 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47279 * 60.00084 * 19 18 17 38 38 H 1.08998 * 109.47529 * 70.04287 * 22 20 14 39 39 H 1.08999 * 109.46836 * 190.04293 * 22 20 14 40 40 H 1.08997 * 109.46753 * 310.03582 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2392 2.4828 7 7 2.1373 -0.8594 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9954 3.9069 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6924 -1.1994 13 6 3.4812 -0.8366 -1.1643 14 6 1.5883 0.0008 -2.4206 15 1 0.6346 0.4965 -2.2393 16 6 2.6379 1.0423 -2.8137 17 6 2.1883 1.7647 -4.0852 18 6 2.0277 0.7496 -5.2188 19 6 0.9781 -0.2919 -4.8257 20 6 1.4280 -1.0145 -3.5539 21 1 0.6803 -1.7566 -3.2738 22 6 2.7666 -1.7104 -3.8083 23 1 -0.3633 0.6318 -0.8106 24 1 -0.3633 -1.0178 -0.1419 25 1 -0.3633 0.3861 0.9524 26 1 1.9033 -0.5278 4.4376 27 1 3.7583 -1.5381 -0.3774 28 1 3.8325 -1.2116 -2.1256 29 1 3.9372 0.1330 -0.9639 30 1 2.7521 1.7657 -2.0062 31 1 3.5915 0.5466 -2.9950 32 1 2.9359 2.5070 -4.3650 33 1 1.2347 2.2605 -3.9036 34 1 2.9812 0.2539 -5.4004 35 1 1.7069 1.2642 -6.1245 36 1 0.8633 -1.0148 -5.6333 37 1 0.0245 0.2039 -4.6441 38 1 2.9999 -2.3670 -2.9702 39 1 2.7021 -2.2986 -4.7237 40 1 3.5515 -0.9612 -3.9125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042607538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = 2.436254 kcal Electronic energy + Delta-G solvation = -17120.471133 eV Core-core repulsion = 14742.152143 eV Total energy + Delta-G solvation = -2378.318990 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.68437 -35.93400 -32.67770 -31.69358 -30.50822 -28.67114 -27.15842 -24.92796 -23.98902 -21.88045 -21.70980 -19.31923 -18.03900 -16.69516 -15.65516 -15.32181 -14.70125 -14.23326 -14.11508 -13.35234 -13.10751 -12.77884 -12.73617 -12.38384 -12.17221 -11.86612 -11.71518 -11.48362 -11.36650 -10.99120 -10.72681 -10.66701 -10.46196 -10.30920 -10.06314 -10.02216 -9.83179 -9.56141 -9.33878 -8.92344 -8.53890 -7.18316 -6.04051 -4.02002 3.27577 3.37888 3.39952 4.41908 4.72984 4.90096 4.98300 5.22249 5.28440 5.44013 5.47110 5.58151 5.61808 5.71669 5.83909 5.85958 6.03027 6.12436 6.16099 6.17857 6.20875 6.27425 6.29004 6.39779 6.44544 6.49524 6.53167 6.58603 6.68888 6.71006 6.84838 6.90473 7.00273 7.35215 7.64827 8.05378 8.20324 8.71564 9.03299 9.58535 11.08762 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040426 B = 0.008359 C = 0.007806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.463021 B = 3348.833731 C = 3586.306494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.182 3.818 3 H -0.004 1.004 4 C -0.504 4.504 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.520 5.520 13 C 0.023 3.977 14 C 0.081 3.919 15 H 0.074 0.926 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.077 4.077 21 H 0.073 0.927 22 C -0.148 4.148 23 H 0.026 0.974 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.263 0.737 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 3.089 -15.748 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.242 5.242 13 C -0.125 4.125 14 C -0.029 4.029 15 H 0.092 0.908 16 C -0.188 4.188 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.096 4.096 21 H 0.091 0.909 22 C -0.205 4.205 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.789 2.604 -15.522 15.759 hybrid contribution -0.323 1.715 0.369 1.784 sum -1.111 4.319 -15.153 15.796 Atomic orbital electron populations 1.22212 0.98794 1.00889 0.98349 1.19692 0.91242 0.92599 0.89054 0.98683 1.21036 1.31688 1.13490 0.87984 0.89951 1.24939 0.95893 0.96581 0.95867 1.69878 1.45925 1.40313 0.97835 0.86893 0.80761 0.83897 0.76814 1.20580 1.22575 1.19450 1.62082 1.11097 1.49991 1.01063 1.22619 0.88391 1.00082 1.01395 1.21783 0.97875 0.92307 0.90892 0.90811 1.22283 1.00573 0.98949 0.97014 1.21492 1.00898 0.97533 0.95405 1.21535 0.99611 0.96935 0.97459 1.21596 0.98355 0.97750 0.97479 1.21039 0.97818 0.97185 0.93522 0.90902 1.22105 0.97373 1.00195 1.00849 0.95541 0.92146 0.93895 0.92705 0.91097 0.91841 0.96604 0.92384 0.91123 0.92722 0.92439 0.91940 0.92805 0.92397 0.92381 0.91179 0.94024 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.40 37.16 0.31 -2.95 16 2 C 0.18 4.36 1.58 -68.87 -0.11 4.25 16 3 H 0.00 -0.11 6.84 -51.92 -0.35 -0.46 16 4 C -0.50 -14.21 8.58 -34.44 -0.30 -14.50 16 5 H 0.08 2.51 6.55 -52.49 -0.34 2.17 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 8 Si 0.89 22.30 24.43 -169.99 -4.15 18.15 16 9 H -0.28 -6.84 6.81 56.52 0.38 -6.46 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.27 -6.56 6.53 56.52 0.37 -6.20 16 12 N -0.52 -10.68 4.35 -228.29 -0.99 -11.68 16 13 C 0.02 0.45 7.06 60.07 0.42 0.87 16 14 C 0.08 1.37 1.93 -67.72 -0.13 1.24 16 15 H 0.07 1.32 5.68 -51.93 -0.29 1.02 16 16 C -0.15 -2.30 3.83 -26.73 -0.10 -2.40 16 17 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 18 C -0.12 -1.33 5.65 -26.73 -0.15 -1.48 16 19 C -0.11 -1.36 5.44 -26.71 -0.15 -1.51 16 20 C -0.08 -1.10 2.91 -90.60 -0.26 -1.37 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 22 C -0.15 -2.00 6.81 37.16 0.25 -1.75 16 23 H 0.03 0.51 6.38 -51.93 -0.33 0.18 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.04 1.01 3.23 -51.93 -0.17 0.84 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 27 H 0.07 1.53 6.49 -51.93 -0.34 1.20 16 28 H 0.06 1.04 3.58 -51.93 -0.19 0.85 16 29 H 0.02 0.31 7.16 -51.93 -0.37 -0.06 16 30 H 0.06 1.00 7.70 -51.92 -0.40 0.60 16 31 H 0.07 1.06 4.72 -51.93 -0.25 0.81 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.70 6.67 -51.93 -0.35 0.35 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.05 6.39 -51.93 -0.33 0.72 16 39 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 40 H 0.05 0.72 4.36 -51.93 -0.23 0.49 16 LS Contribution 275.90 15.07 4.16 4.16 Total: -1.00 -29.42 275.90 -7.18 -36.60 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.50 Total: -0.98 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -0.46 Total: -19.31 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.22 Total: -38.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.15 Total: 18.15 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.42 -7.18 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042607538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.034 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds