Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46866 * 2 1 4 4 C 1.50696 * 109.47496 * 119.99578 * 2 1 3 5 5 H 1.07998 * 119.99729 * 119.99384 * 4 2 1 6 6 C 1.37882 * 120.00242 * 300.00607 * 4 2 1 7 7 N 1.31506 * 120.00253 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99525 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47222 * 90.00283 * 8 6 4 10 10 H 1.48502 * 109.46902 * 210.00045 * 8 6 4 11 11 H 1.48497 * 109.47356 * 330.00019 * 8 6 4 12 12 N 1.46896 * 109.47270 * 240.00233 * 2 1 3 13 13 C 1.46902 * 111.00004 * 185.96102 * 12 2 1 14 14 C 1.46897 * 111.00486 * 62.00325 * 12 2 1 15 15 H 1.09002 * 109.46891 * 329.87595 * 14 12 2 16 16 C 1.53003 * 109.47224 * 89.87708 * 14 12 2 17 17 C 1.52998 * 109.47219 * 180.02562 * 16 14 12 18 18 C 1.53007 * 109.46917 * 299.99493 * 17 16 14 19 19 C 1.53003 * 109.46762 * 60.00227 * 18 17 16 20 20 C 1.52996 * 109.47663 * 209.87719 * 14 12 2 21 21 H 1.09003 * 109.47137 * 59.99403 * 20 14 12 22 22 C 1.53002 * 109.46958 * 300.00209 * 20 14 12 23 23 H 1.09001 * 109.46739 * 52.06480 * 1 2 3 24 24 H 1.08998 * 109.46793 * 172.06570 * 1 2 3 25 25 H 1.09000 * 109.46853 * 292.06926 * 1 2 3 26 26 H 0.96999 * 120.00557 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47406 * 68.62757 * 13 12 2 28 28 H 1.09005 * 109.46649 * 188.62530 * 13 12 2 29 29 H 1.09003 * 109.47040 * 308.62055 * 13 12 2 30 30 H 1.09011 * 109.46619 * 300.00264 * 16 14 12 31 31 H 1.08992 * 109.47250 * 60.00189 * 16 14 12 32 32 H 1.09007 * 109.47033 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.47400 * 59.99579 * 17 16 14 34 34 H 1.08992 * 109.47222 * 300.00229 * 18 17 16 35 35 H 1.08993 * 109.46909 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47108 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47279 * 60.00084 * 19 18 17 38 38 H 1.08998 * 109.47529 * 70.04287 * 22 20 14 39 39 H 1.08999 * 109.46836 * 190.04293 * 22 20 14 40 40 H 1.08997 * 109.46753 * 310.03582 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2392 2.4828 7 7 2.1373 -0.8594 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9954 3.9069 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6924 -1.1994 13 6 3.4812 -0.8366 -1.1643 14 6 1.5883 0.0008 -2.4206 15 1 0.6346 0.4965 -2.2393 16 6 2.6379 1.0423 -2.8137 17 6 2.1883 1.7647 -4.0852 18 6 2.0277 0.7496 -5.2188 19 6 0.9781 -0.2919 -4.8257 20 6 1.4280 -1.0145 -3.5539 21 1 0.6803 -1.7566 -3.2738 22 6 2.7666 -1.7104 -3.8083 23 1 -0.3633 0.6318 -0.8106 24 1 -0.3633 -1.0178 -0.1419 25 1 -0.3633 0.3861 0.9524 26 1 1.9033 -0.5278 4.4376 27 1 3.7583 -1.5381 -0.3774 28 1 3.8325 -1.2116 -2.1256 29 1 3.9372 0.1330 -0.9639 30 1 2.7521 1.7657 -2.0062 31 1 3.5915 0.5466 -2.9950 32 1 2.9359 2.5070 -4.3650 33 1 1.2347 2.2605 -3.9036 34 1 2.9812 0.2539 -5.4004 35 1 1.7069 1.2642 -6.1245 36 1 0.8633 -1.0148 -5.6333 37 1 0.0245 0.2039 -4.6441 38 1 2.9999 -2.3670 -2.9702 39 1 2.7021 -2.2986 -4.7237 40 1 3.5515 -0.9612 -3.9125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042607538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = -16.689368 kcal Electronic energy + Delta-G solvation = -17121.300482 eV Core-core repulsion = 14742.152143 eV Total energy + Delta-G solvation = -2379.148339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98984 -37.47508 -34.64769 -32.87862 -32.23284 -30.04104 -28.50445 -26.85876 -25.44862 -23.35138 -22.81983 -20.94910 -19.26212 -18.78223 -17.23956 -16.74304 -16.24062 -15.77474 -15.41530 -14.84977 -14.61538 -14.45618 -14.10529 -13.93677 -13.56946 -13.28481 -13.11433 -12.96786 -12.61356 -12.56464 -12.42895 -12.11086 -12.02559 -11.66597 -11.58999 -11.49007 -11.20199 -11.08325 -10.79788 -10.74417 -10.64191 -8.83901 -8.29254 -6.31916 1.26758 1.31917 1.42073 2.29690 3.04050 3.26513 3.81781 3.91345 4.11672 4.29820 4.37982 4.42445 4.46055 4.55599 4.57812 4.64784 4.66743 4.74767 4.76494 4.84921 4.89102 4.92780 5.07318 5.09299 5.18573 5.19915 5.27769 5.28354 5.30274 5.41819 5.45772 5.53020 5.58775 5.65655 5.73824 6.08556 6.45194 6.74884 6.80307 7.33161 8.87004 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040426 B = 0.008359 C = 0.007806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.463021 B = 3348.833731 C = 3586.306494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.186 3.814 3 H -0.016 1.016 4 C -0.507 4.507 5 H 0.043 0.957 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.297 1.297 11 H -0.255 1.255 12 N -0.530 5.530 13 C 0.031 3.969 14 C 0.078 3.922 15 H 0.067 0.933 16 C -0.146 4.146 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.075 4.075 21 H 0.060 0.940 22 C -0.146 4.146 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.265 0.735 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.007 0.993 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 4.427 -18.603 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.078 3.922 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.179 1.179 12 N -0.253 5.253 13 C -0.116 4.116 14 C -0.030 4.030 15 H 0.085 0.915 16 C -0.185 4.185 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.094 4.094 21 H 0.078 0.922 22 C -0.203 4.203 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.026 0.974 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.819 3.940 -18.410 18.915 hybrid contribution 0.071 1.211 1.220 1.720 sum -1.748 5.151 -17.190 18.030 Atomic orbital electron populations 1.22104 0.97141 1.01459 0.99042 1.19503 0.92454 0.91401 0.88887 0.99893 1.21297 1.30750 1.12345 0.90128 0.93925 1.25772 0.97458 0.99875 0.95443 1.70027 1.47896 1.42469 0.98493 0.85872 0.79426 0.80105 0.77093 1.19015 1.22527 1.17927 1.62034 1.11414 1.50443 1.01418 1.22563 0.88197 0.98832 1.02058 1.21918 0.97811 0.93363 0.89947 0.91508 1.22217 1.00230 0.98144 0.97867 1.21479 1.01224 0.97961 0.94289 1.21531 0.99668 0.96407 0.97543 1.21570 0.98569 0.98165 0.96358 1.21018 0.98085 0.96469 0.93798 0.92171 1.22051 0.96971 1.00166 1.01100 0.92389 0.92398 0.94815 0.92577 0.94432 0.88453 0.97422 0.94786 0.90850 0.91372 0.92402 0.91442 0.90615 0.90496 0.92210 0.93280 0.91722 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.11 8.40 71.98 0.60 -5.50 16 2 C 0.19 8.96 1.58 44.17 0.07 9.03 16 3 H -0.02 -0.82 6.84 -2.38 -0.02 -0.84 16 4 C -0.51 -29.60 8.58 25.60 0.22 -29.38 16 5 H 0.04 2.76 6.55 -2.91 -0.02 2.75 16 6 C 0.01 0.68 5.45 84.66 0.46 1.14 16 7 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 8 Si 0.95 46.13 24.43 68.60 1.68 47.81 16 9 H -0.26 -12.18 6.81 99.48 0.68 -11.50 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.25 -11.72 6.53 99.48 0.65 -11.07 16 12 N -0.53 -21.87 4.35 -876.19 -3.81 -25.68 16 13 C 0.03 1.24 7.06 127.69 0.90 2.15 16 14 C 0.08 2.52 1.93 44.92 0.09 2.61 16 15 H 0.07 2.25 5.68 -2.39 -0.01 2.24 16 16 C -0.15 -4.22 3.83 30.59 0.12 -4.11 16 17 C -0.11 -2.44 5.92 30.60 0.18 -2.26 16 18 C -0.11 -2.08 5.65 30.60 0.17 -1.91 16 19 C -0.11 -2.18 5.44 30.61 0.17 -2.01 16 20 C -0.07 -1.97 2.91 -10.78 -0.03 -2.00 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 C -0.15 -3.58 6.81 71.98 0.49 -3.09 16 23 H 0.06 2.14 6.38 -2.39 -0.02 2.12 16 24 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 25 H 0.03 1.52 3.23 -2.39 -0.01 1.51 16 26 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.04 1.71 6.49 -2.39 -0.02 1.70 16 28 H 0.10 3.15 3.58 -2.38 -0.01 3.14 16 29 H 0.01 0.30 7.16 -2.39 -0.02 0.28 16 30 H 0.03 1.13 7.70 -2.38 -0.02 1.11 16 31 H 0.07 2.06 4.72 -2.39 -0.01 2.04 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.19 6.67 -2.39 -0.02 1.18 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.41 6.39 -2.39 -0.02 1.39 16 39 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 40 H 0.06 1.42 4.36 -2.39 -0.01 1.41 16 Total: -1.00 -65.23 275.90 2.52 -62.70 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.92 Total: 10.49 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.44 Total: -35.33 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.52 Total: -85.67 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.68 Total: 47.81 kcal Total: -65.23 2.52 -62.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042607538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.015 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds