Wall clock time and date at job start Mon Mar 30 2020 03:46:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.46927 * 2 1
4 4 C 1.53039 * 109.46065 * 240.01851 * 2 1 3
5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1
6 6 H 1.08994 * 109.52349 * 177.58253 * 5 4 2
7 7 C 1.52997 * 109.52103 * 297.77359 * 5 4 2
8 8 C 1.53203 * 109.11533 * 57.63615 * 5 4 2
9 9 C 1.53030 * 109.30370 * 302.37368 * 8 5 4
10 10 N 1.46846 * 109.52435 * 59.17688 * 9 8 5
11 11 C 1.46902 * 111.00121 * 174.16395 * 10 9 8
12 12 C 1.53001 * 109.47122 * 314.21275 * 11 10 9
13 13 C 1.53000 * 109.47334 * 179.97438 * 12 11 10
14 14 C 1.50695 * 109.47141 * 179.97438 * 13 12 11
15 15 H 1.08001 * 120.00201 * 359.97438 * 14 13 12
16 16 C 1.37876 * 119.99909 * 180.02562 * 14 13 12
17 17 N 1.31508 * 120.00076 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 120.00090 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47268 * 89.99422 * 18 16 14
20 20 H 1.48495 * 109.47194 * 209.99566 * 18 16 14
21 21 H 1.48510 * 109.46911 * 329.99494 * 18 16 14
22 22 H 1.09000 * 109.47236 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46858 * 299.98030 * 1 2 3
24 24 H 1.08994 * 109.47405 * 59.97623 * 1 2 3
25 25 H 1.09002 * 109.50563 * 300.74995 * 4 2 1
26 26 H 1.09003 * 109.50107 * 60.82976 * 4 2 1
27 27 H 1.08996 * 109.47898 * 59.99840 * 7 5 4
28 28 H 1.09002 * 109.47178 * 180.02562 * 7 5 4
29 29 H 1.09005 * 109.47225 * 299.99680 * 7 5 4
30 30 H 1.08997 * 109.49417 * 182.41991 * 8 5 4
31 31 H 1.09005 * 109.49195 * 62.32110 * 8 5 4
32 32 H 1.09004 * 109.46094 * 299.16423 * 9 8 5
33 33 H 1.08994 * 109.46717 * 179.19390 * 9 8 5
34 34 H 1.09004 * 109.46870 * 74.20602 * 11 10 9
35 35 H 1.08996 * 109.46981 * 194.20767 * 11 10 9
36 36 H 1.09006 * 109.46719 * 299.99979 * 12 11 10
37 37 H 1.09000 * 109.47049 * 59.99402 * 12 11 10
38 38 H 1.08997 * 109.46964 * 300.00264 * 13 12 11
39 39 H 1.09001 * 109.46636 * 59.99831 * 13 12 11
40 40 H 0.97002 * 119.99938 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0398 -0.7211 -1.2499
5 6 3.5709 -0.7363 -1.2366
6 1 3.9372 -1.2864 -2.1032
7 6 4.0968 0.6997 -1.2810
8 6 4.0547 -1.4189 0.0468
9 6 3.4864 -0.6778 1.2591
10 7 2.0193 -0.6918 1.1995
11 6 1.4373 -0.1104 2.4166
12 6 2.1497 -0.6801 3.6449
13 6 1.5441 -0.0742 4.9126
14 6 2.2454 -0.6359 6.1224
15 1 3.0430 -1.3536 5.9995
16 6 1.8680 -0.2343 7.3862
17 7 0.8964 0.6392 7.5359
18 14 2.7378 -0.9299 8.8859
19 1 3.8983 -0.0691 9.2287
20 1 1.7943 -0.9683 10.0319
21 1 3.2124 -2.3055 8.5891
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3633 0.5136 0.8902
24 1 -0.3634 0.5142 -0.8897
25 1 1.6657 -1.7449 -1.2575
26 1 1.6888 -0.1988 -2.1399
27 1 3.7319 1.2475 -0.4123
28 1 5.1868 0.6879 -1.2720
29 1 3.7467 1.1869 -2.1911
30 1 5.1438 -1.3949 0.0833
31 1 3.7124 -2.4537 0.0597
32 1 3.8403 0.3532 1.2531
33 1 3.8174 -1.1698 2.1736
34 1 1.5589 0.9726 2.3959
35 1 0.3765 -0.3562 2.4652
36 1 2.0283 -1.7632 3.6655
37 1 3.2106 -0.4344 3.5961
38 1 1.6659 1.0087 4.8916
39 1 0.4832 -0.3197 4.9614
40 1 0.6312 0.9220 8.4251
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000051731939.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:36
Heat of formation + Delta-G solvation = -27.313927 kcal
Electronic energy + Delta-G solvation = -16170.395076 eV
Core-core repulsion = 13790.786022 eV
Total energy + Delta-G solvation = -2379.609054 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.60053 -35.30267 -33.40911 -32.42673 -30.76608 -28.02141 -26.67363 -25.99282
-23.88403 -22.27590 -20.86253 -19.67807 -18.49102 -16.34300 -15.67351 -15.20418
-14.54271 -14.51466 -14.32785 -14.23037 -13.46636 -13.29831 -12.55133 -12.26490
-12.00240 -11.79489 -11.68142 -11.53330 -11.39974 -11.38076 -10.90760 -10.84536
-10.63824 -10.53039 -10.50018 -10.02659 -9.96008 -9.54342 -9.27980 -8.99934
-8.31375 -7.86395 -5.96771 -3.98751 3.33953 3.40022 3.43826 4.18264
4.49340 4.77390 4.79074 4.92566 5.22052 5.34467 5.39036 5.43021
5.50298 5.54919 5.62935 5.68865 5.80584 5.85599 5.90350 5.95486
6.00554 6.02373 6.10826 6.15638 6.26557 6.29293 6.38688 6.41527
6.48004 6.76905 6.86256 7.15226 7.52800 7.53921 7.71616 7.87140
8.03808 8.47254 9.08443 9.65090 11.14719
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.043608 B = 0.005343 C = 0.004974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 641.935732 B = 5239.478840 C = 5628.235758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.079 3.921
3 H 0.038 0.962
4 C -0.105 4.105
5 C -0.094 4.094
6 H 0.066 0.934
7 C -0.151 4.151
8 C -0.111 4.111
9 C 0.048 3.952
10 N -0.533 5.533
11 C 0.056 3.944
12 C -0.112 4.112
13 C 0.022 3.978
14 C -0.518 4.518
15 H 0.054 0.946
16 C 0.056 3.944
17 N -0.897 5.897
18 Si 0.891 3.109
19 H -0.281 1.281
20 H -0.287 1.287
21 H -0.274 1.274
22 H 0.062 0.938
23 H 0.059 0.941
24 H 0.053 0.947
25 H 0.069 0.931
26 H 0.060 0.940
27 H 0.058 0.942
28 H 0.052 0.948
29 H 0.050 0.950
30 H 0.062 0.938
31 H 0.068 0.932
32 H 0.031 0.969
33 H 0.087 0.913
34 H 0.025 0.975
35 H 0.072 0.928
36 H 0.055 0.945
37 H 0.049 0.951
38 H 0.013 0.987
39 H 0.016 0.984
40 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.375 -1.266 -17.673 18.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.029 4.029
3 H 0.056 0.944
4 C -0.143 4.143
5 C -0.113 4.113
6 H 0.084 0.916
7 C -0.208 4.208
8 C -0.149 4.149
9 C -0.080 4.080
10 N -0.259 5.259
11 C -0.071 4.071
12 C -0.150 4.150
13 C -0.016 4.016
14 C -0.556 4.556
15 H 0.073 0.927
16 C -0.145 4.145
17 N -0.536 5.536
18 Si 0.719 3.281
19 H -0.207 1.207
20 H -0.212 1.212
21 H -0.199 1.199
22 H 0.081 0.919
23 H 0.078 0.922
24 H 0.072 0.928
25 H 0.088 0.912
26 H 0.079 0.921
27 H 0.077 0.923
28 H 0.071 0.929
29 H 0.069 0.931
30 H 0.080 0.920
31 H 0.087 0.913
32 H 0.049 0.951
33 H 0.105 0.895
34 H 0.044 0.956
35 H 0.091 0.909
36 H 0.074 0.926
37 H 0.068 0.932
38 H 0.031 0.969
39 H 0.034 0.966
40 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 3.117 -1.656 -17.572 17.923
hybrid contribution 0.663 0.600 0.985 1.331
sum 3.780 -1.056 -16.587 17.045
Atomic orbital electron populations
1.21896 0.94700 1.02450 1.01524 1.21619 0.95145 0.95385 0.90765
0.94431 1.21646 0.94827 1.01239 0.96554 1.21170 0.95718 0.96288
0.98075 0.91563 1.21942 1.00623 0.96616 1.01669 1.21642 0.99385
0.99998 0.93906 1.22215 0.87972 0.98852 0.98959 1.62056 1.06790
1.55008 1.02028 1.22296 0.99644 0.96125 0.89041 1.21797 0.98729
1.00281 0.94153 1.19068 0.96164 0.95826 0.90495 1.21253 1.18359
1.24901 0.91114 0.92735 1.25023 0.95169 0.95201 0.99095 1.69966
1.28801 1.32197 1.22651 0.86607 0.79393 0.79497 0.82585 1.20724
1.21239 1.19859 0.91897 0.92166 0.92797 0.91247 0.92119 0.92306
0.92915 0.93071 0.91969 0.91279 0.95110 0.89519 0.95646 0.90930
0.92614 0.93246 0.96880 0.96586 0.93063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 8.78 37.15 0.33 -1.52 16
2 C 0.08 1.05 2.16 -67.72 -0.15 0.91 16
3 H 0.04 0.52 6.52 -51.93 -0.34 0.18 16
4 C -0.10 -1.18 4.87 -26.65 -0.13 -1.31 16
5 C -0.09 -1.01 3.23 -90.45 -0.29 -1.30 16
6 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
7 C -0.15 -1.57 8.61 37.16 0.32 -1.25 16
8 C -0.11 -1.34 5.60 -26.61 -0.15 -1.49 16
9 C 0.05 0.70 4.60 -3.84 -0.02 0.68 16
10 N -0.53 -8.34 4.64 -226.69 -1.05 -9.39 16
11 C 0.06 1.01 4.36 -3.82 -0.02 1.00 16
12 C -0.11 -2.38 4.40 -26.73 -0.12 -2.50 16
13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16
14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16
15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16
16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
17 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16
18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16
19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16
24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.06 0.69 4.92 -51.93 -0.26 0.44 16
28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
32 H 0.03 0.46 6.51 -51.93 -0.34 0.12 16
33 H 0.09 1.39 5.81 -51.93 -0.30 1.08 16
34 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16
35 H 0.07 1.33 6.84 -51.93 -0.36 0.97 16
36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
37 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16
38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 300.13 15.07 4.52 4.52
Total: -1.00 -29.82 300.13 -8.87 -38.69
By element:
Atomic # 1 Polarization: 3.22 SS G_CDS: -7.29 Total: -4.07 kcal
Atomic # 6 Polarization: -19.30 SS G_CDS: -0.77 Total: -20.07 kcal
Atomic # 7 Polarization: -35.71 SS G_CDS: -0.32 Total: -36.02 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -29.82 -8.87 -38.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051731939.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.381 kcal
(2) G-P(sol) polarization free energy of solvation -29.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds