Wall clock time and date at job start Mon Mar 30 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46927 * 2 1 4 4 C 1.53039 * 109.46065 * 240.01851 * 2 1 3 5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1 6 6 H 1.08994 * 109.52349 * 177.58253 * 5 4 2 7 7 C 1.52997 * 109.52103 * 297.77359 * 5 4 2 8 8 C 1.53203 * 109.11533 * 57.63615 * 5 4 2 9 9 C 1.53030 * 109.30370 * 302.37368 * 8 5 4 10 10 N 1.46846 * 109.52435 * 59.17688 * 9 8 5 11 11 C 1.46902 * 111.00121 * 174.16395 * 10 9 8 12 12 C 1.53001 * 109.47122 * 314.21275 * 11 10 9 13 13 C 1.53000 * 109.47334 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47141 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00201 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99909 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00076 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47268 * 89.99422 * 18 16 14 20 20 H 1.48495 * 109.47194 * 209.99566 * 18 16 14 21 21 H 1.48510 * 109.46911 * 329.99494 * 18 16 14 22 22 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46858 * 299.98030 * 1 2 3 24 24 H 1.08994 * 109.47405 * 59.97623 * 1 2 3 25 25 H 1.09002 * 109.50563 * 300.74995 * 4 2 1 26 26 H 1.09003 * 109.50107 * 60.82976 * 4 2 1 27 27 H 1.08996 * 109.47898 * 59.99840 * 7 5 4 28 28 H 1.09002 * 109.47178 * 180.02562 * 7 5 4 29 29 H 1.09005 * 109.47225 * 299.99680 * 7 5 4 30 30 H 1.08997 * 109.49417 * 182.41991 * 8 5 4 31 31 H 1.09005 * 109.49195 * 62.32110 * 8 5 4 32 32 H 1.09004 * 109.46094 * 299.16423 * 9 8 5 33 33 H 1.08994 * 109.46717 * 179.19390 * 9 8 5 34 34 H 1.09004 * 109.46870 * 74.20602 * 11 10 9 35 35 H 1.08996 * 109.46981 * 194.20767 * 11 10 9 36 36 H 1.09006 * 109.46719 * 299.99979 * 12 11 10 37 37 H 1.09000 * 109.47049 * 59.99402 * 12 11 10 38 38 H 1.08997 * 109.46964 * 300.00264 * 13 12 11 39 39 H 1.09001 * 109.46636 * 59.99831 * 13 12 11 40 40 H 0.97002 * 119.99938 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 -1.2499 5 6 3.5709 -0.7363 -1.2366 6 1 3.9372 -1.2864 -2.1032 7 6 4.0968 0.6997 -1.2810 8 6 4.0547 -1.4189 0.0468 9 6 3.4864 -0.6778 1.2591 10 7 2.0193 -0.6918 1.1995 11 6 1.4373 -0.1104 2.4166 12 6 2.1497 -0.6801 3.6449 13 6 1.5441 -0.0742 4.9126 14 6 2.2454 -0.6359 6.1224 15 1 3.0430 -1.3536 5.9995 16 6 1.8680 -0.2343 7.3862 17 7 0.8964 0.6392 7.5359 18 14 2.7378 -0.9299 8.8859 19 1 3.8983 -0.0691 9.2287 20 1 1.7943 -0.9683 10.0319 21 1 3.2124 -2.3055 8.5891 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5136 0.8902 24 1 -0.3634 0.5142 -0.8897 25 1 1.6657 -1.7449 -1.2575 26 1 1.6888 -0.1988 -2.1399 27 1 3.7319 1.2475 -0.4123 28 1 5.1868 0.6879 -1.2720 29 1 3.7467 1.1869 -2.1911 30 1 5.1438 -1.3949 0.0833 31 1 3.7124 -2.4537 0.0597 32 1 3.8403 0.3532 1.2531 33 1 3.8174 -1.1698 2.1736 34 1 1.5589 0.9726 2.3959 35 1 0.3765 -0.3562 2.4652 36 1 2.0283 -1.7632 3.6655 37 1 3.2106 -0.4344 3.5961 38 1 1.6659 1.0087 4.8916 39 1 0.4832 -0.3197 4.9614 40 1 0.6312 0.9220 8.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051731939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:36 Heat of formation + Delta-G solvation = -27.313927 kcal Electronic energy + Delta-G solvation = -16170.395076 eV Core-core repulsion = 13790.786022 eV Total energy + Delta-G solvation = -2379.609054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.60053 -35.30267 -33.40911 -32.42673 -30.76608 -28.02141 -26.67363 -25.99282 -23.88403 -22.27590 -20.86253 -19.67807 -18.49102 -16.34300 -15.67351 -15.20418 -14.54271 -14.51466 -14.32785 -14.23037 -13.46636 -13.29831 -12.55133 -12.26490 -12.00240 -11.79489 -11.68142 -11.53330 -11.39974 -11.38076 -10.90760 -10.84536 -10.63824 -10.53039 -10.50018 -10.02659 -9.96008 -9.54342 -9.27980 -8.99934 -8.31375 -7.86395 -5.96771 -3.98751 3.33953 3.40022 3.43826 4.18264 4.49340 4.77390 4.79074 4.92566 5.22052 5.34467 5.39036 5.43021 5.50298 5.54919 5.62935 5.68865 5.80584 5.85599 5.90350 5.95486 6.00554 6.02373 6.10826 6.15638 6.26557 6.29293 6.38688 6.41527 6.48004 6.76905 6.86256 7.15226 7.52800 7.53921 7.71616 7.87140 8.03808 8.47254 9.08443 9.65090 11.14719 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043608 B = 0.005343 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.935732 B = 5239.478840 C = 5628.235758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 H 0.038 0.962 4 C -0.105 4.105 5 C -0.094 4.094 6 H 0.066 0.934 7 C -0.151 4.151 8 C -0.111 4.111 9 C 0.048 3.952 10 N -0.533 5.533 11 C 0.056 3.944 12 C -0.112 4.112 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -1.266 -17.673 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.143 4.143 5 C -0.113 4.113 6 H 0.084 0.916 7 C -0.208 4.208 8 C -0.149 4.149 9 C -0.080 4.080 10 N -0.259 5.259 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.117 -1.656 -17.572 17.923 hybrid contribution 0.663 0.600 0.985 1.331 sum 3.780 -1.056 -16.587 17.045 Atomic orbital electron populations 1.21896 0.94700 1.02450 1.01524 1.21619 0.95145 0.95385 0.90765 0.94431 1.21646 0.94827 1.01239 0.96554 1.21170 0.95718 0.96288 0.98075 0.91563 1.21942 1.00623 0.96616 1.01669 1.21642 0.99385 0.99998 0.93906 1.22215 0.87972 0.98852 0.98959 1.62056 1.06790 1.55008 1.02028 1.22296 0.99644 0.96125 0.89041 1.21797 0.98729 1.00281 0.94153 1.19068 0.96164 0.95826 0.90495 1.21253 1.18359 1.24901 0.91114 0.92735 1.25023 0.95169 0.95201 0.99095 1.69966 1.28801 1.32197 1.22651 0.86607 0.79393 0.79497 0.82585 1.20724 1.21239 1.19859 0.91897 0.92166 0.92797 0.91247 0.92119 0.92306 0.92915 0.93071 0.91969 0.91279 0.95110 0.89519 0.95646 0.90930 0.92614 0.93246 0.96880 0.96586 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.78 37.15 0.33 -1.52 16 2 C 0.08 1.05 2.16 -67.72 -0.15 0.91 16 3 H 0.04 0.52 6.52 -51.93 -0.34 0.18 16 4 C -0.10 -1.18 4.87 -26.65 -0.13 -1.31 16 5 C -0.09 -1.01 3.23 -90.45 -0.29 -1.30 16 6 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.15 -1.57 8.61 37.16 0.32 -1.25 16 8 C -0.11 -1.34 5.60 -26.61 -0.15 -1.49 16 9 C 0.05 0.70 4.60 -3.84 -0.02 0.68 16 10 N -0.53 -8.34 4.64 -226.69 -1.05 -9.39 16 11 C 0.06 1.01 4.36 -3.82 -0.02 1.00 16 12 C -0.11 -2.38 4.40 -26.73 -0.12 -2.50 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.69 4.92 -51.93 -0.26 0.44 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.46 6.51 -51.93 -0.34 0.12 16 33 H 0.09 1.39 5.81 -51.93 -0.30 1.08 16 34 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 1.33 6.84 -51.93 -0.36 0.97 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -29.82 300.13 -8.87 -38.69 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -7.29 Total: -4.07 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.77 Total: -20.07 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.32 Total: -36.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.82 -8.87 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.381 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds