Wall clock time and date at job start Mon Mar 30 2020 03:46:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.46927 * 2 1
4 4 C 1.53039 * 109.46065 * 240.01851 * 2 1 3
5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1
6 6 H 1.08994 * 109.52349 * 177.58253 * 5 4 2
7 7 C 1.52997 * 109.52103 * 297.77359 * 5 4 2
8 8 C 1.53203 * 109.11533 * 57.63615 * 5 4 2
9 9 C 1.53030 * 109.30370 * 302.37368 * 8 5 4
10 10 N 1.46846 * 109.52435 * 59.17688 * 9 8 5
11 11 C 1.46902 * 111.00121 * 174.16395 * 10 9 8
12 12 C 1.53001 * 109.47122 * 314.21275 * 11 10 9
13 13 C 1.53000 * 109.47334 * 179.97438 * 12 11 10
14 14 C 1.50695 * 109.47141 * 179.97438 * 13 12 11
15 15 H 1.08001 * 120.00201 * 359.97438 * 14 13 12
16 16 C 1.37876 * 119.99909 * 180.02562 * 14 13 12
17 17 N 1.31508 * 120.00076 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 120.00090 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47268 * 89.99422 * 18 16 14
20 20 H 1.48495 * 109.47194 * 209.99566 * 18 16 14
21 21 H 1.48510 * 109.46911 * 329.99494 * 18 16 14
22 22 H 1.09000 * 109.47236 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46858 * 299.98030 * 1 2 3
24 24 H 1.08994 * 109.47405 * 59.97623 * 1 2 3
25 25 H 1.09002 * 109.50563 * 300.74995 * 4 2 1
26 26 H 1.09003 * 109.50107 * 60.82976 * 4 2 1
27 27 H 1.08996 * 109.47898 * 59.99840 * 7 5 4
28 28 H 1.09002 * 109.47178 * 180.02562 * 7 5 4
29 29 H 1.09005 * 109.47225 * 299.99680 * 7 5 4
30 30 H 1.08997 * 109.49417 * 182.41991 * 8 5 4
31 31 H 1.09005 * 109.49195 * 62.32110 * 8 5 4
32 32 H 1.09004 * 109.46094 * 299.16423 * 9 8 5
33 33 H 1.08994 * 109.46717 * 179.19390 * 9 8 5
34 34 H 1.09004 * 109.46870 * 74.20602 * 11 10 9
35 35 H 1.08996 * 109.46981 * 194.20767 * 11 10 9
36 36 H 1.09006 * 109.46719 * 299.99979 * 12 11 10
37 37 H 1.09000 * 109.47049 * 59.99402 * 12 11 10
38 38 H 1.08997 * 109.46964 * 300.00264 * 13 12 11
39 39 H 1.09001 * 109.46636 * 59.99831 * 13 12 11
40 40 H 0.97002 * 119.99938 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0398 -0.7211 -1.2499
5 6 3.5709 -0.7363 -1.2366
6 1 3.9372 -1.2864 -2.1032
7 6 4.0968 0.6997 -1.2810
8 6 4.0547 -1.4189 0.0468
9 6 3.4864 -0.6778 1.2591
10 7 2.0193 -0.6918 1.1995
11 6 1.4373 -0.1104 2.4166
12 6 2.1497 -0.6801 3.6449
13 6 1.5441 -0.0742 4.9126
14 6 2.2454 -0.6359 6.1224
15 1 3.0430 -1.3536 5.9995
16 6 1.8680 -0.2343 7.3862
17 7 0.8964 0.6392 7.5359
18 14 2.7378 -0.9299 8.8859
19 1 3.8983 -0.0691 9.2287
20 1 1.7943 -0.9683 10.0319
21 1 3.2124 -2.3055 8.5891
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3633 0.5136 0.8902
24 1 -0.3634 0.5142 -0.8897
25 1 1.6657 -1.7449 -1.2575
26 1 1.6888 -0.1988 -2.1399
27 1 3.7319 1.2475 -0.4123
28 1 5.1868 0.6879 -1.2720
29 1 3.7467 1.1869 -2.1911
30 1 5.1438 -1.3949 0.0833
31 1 3.7124 -2.4537 0.0597
32 1 3.8403 0.3532 1.2531
33 1 3.8174 -1.1698 2.1736
34 1 1.5589 0.9726 2.3959
35 1 0.3765 -0.3562 2.4652
36 1 2.0283 -1.7632 3.6655
37 1 3.2106 -0.4344 3.5961
38 1 1.6659 1.0087 4.8916
39 1 0.4832 -0.3197 4.9614
40 1 0.6312 0.9220 8.4251
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000051731939.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:35
Heat of formation + Delta-G solvation = -44.685211 kcal
Electronic energy + Delta-G solvation = -16171.148351 eV
Core-core repulsion = 13790.786022 eV
Total energy + Delta-G solvation = -2380.362330 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.71141 -36.75563 -35.15838 -33.79091 -32.43095 -29.31282 -27.74343 -27.50957
-25.31143 -23.90549 -22.02311 -21.35020 -19.48405 -18.49576 -16.96114 -16.43311
-16.34156 -15.99114 -15.46492 -15.37520 -14.70590 -14.47926 -14.19927 -13.68931
-13.51774 -13.18237 -12.97665 -12.79373 -12.72659 -12.55140 -12.43427 -12.34179
-12.19864 -11.90832 -11.63244 -11.40485 -11.40080 -11.23589 -10.95436 -10.85808
-10.55747 -9.13480 -8.21000 -6.32420 1.39224 1.40953 1.52322 2.40292
2.97153 3.12020 3.83796 3.84514 3.98205 4.16012 4.24099 4.30873
4.39789 4.46498 4.51370 4.60159 4.67447 4.73712 4.80760 4.88933
4.90875 4.98879 5.02002 5.07386 5.13539 5.17042 5.20090 5.25314
5.32875 5.35359 5.45814 5.49869 5.55266 5.72080 5.83407 6.16196
6.26610 6.33668 6.84085 7.36915 8.91100
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.043608 B = 0.005343 C = 0.004974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 641.935732 B = 5239.478840 C = 5628.235758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.075 3.925
3 H 0.033 0.967
4 C -0.100 4.100
5 C -0.092 4.092
6 H 0.087 0.913
7 C -0.149 4.149
8 C -0.107 4.107
9 C 0.045 3.955
10 N -0.536 5.536
11 C 0.069 3.931
12 C -0.095 4.095
13 C 0.026 3.974
14 C -0.543 4.543
15 H 0.059 0.941
16 C -0.001 4.001
17 N -0.934 5.934
18 Si 0.966 3.034
19 H -0.271 1.271
20 H -0.281 1.281
21 H -0.263 1.263
22 H 0.060 0.940
23 H 0.042 0.958
24 H 0.077 0.923
25 H 0.067 0.933
26 H 0.081 0.919
27 H 0.039 0.961
28 H 0.059 0.941
29 H 0.064 0.936
30 H 0.076 0.924
31 H 0.066 0.934
32 H 0.026 0.974
33 H 0.068 0.932
34 H 0.017 0.983
35 H 0.068 0.932
36 H 0.052 0.948
37 H 0.053 0.947
38 H -0.012 1.012
39 H -0.009 1.009
40 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.462 -2.043 -18.919 19.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.033 4.033
3 H 0.051 0.949
4 C -0.138 4.138
5 C -0.110 4.110
6 H 0.105 0.895
7 C -0.206 4.206
8 C -0.144 4.144
9 C -0.083 4.083
10 N -0.262 5.262
11 C -0.059 4.059
12 C -0.132 4.132
13 C -0.011 4.011
14 C -0.581 4.581
15 H 0.077 0.923
16 C -0.198 4.198
17 N -0.574 5.574
18 Si 0.791 3.209
19 H -0.197 1.197
20 H -0.206 1.206
21 H -0.187 1.187
22 H 0.079 0.921
23 H 0.062 0.938
24 H 0.096 0.904
25 H 0.086 0.914
26 H 0.100 0.900
27 H 0.058 0.942
28 H 0.078 0.922
29 H 0.083 0.917
30 H 0.094 0.906
31 H 0.085 0.915
32 H 0.044 0.956
33 H 0.087 0.913
34 H 0.035 0.965
35 H 0.087 0.913
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.006 0.994
39 H 0.010 0.990
40 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 4.211 -2.438 -18.839 19.458
hybrid contribution 0.302 0.875 1.347 1.635
sum 4.514 -1.563 -17.492 18.133
Atomic orbital electron populations
1.21889 0.94157 1.02426 1.01897 1.21766 0.95670 0.95271 0.90572
0.94912 1.21640 0.95232 1.01021 0.95908 1.21192 0.95300 0.96600
0.97934 0.89460 1.21915 1.01102 0.96180 1.01418 1.21622 1.00105
0.99456 0.93265 1.22248 0.87421 0.98841 0.99760 1.62081 1.07410
1.55002 1.01690 1.22015 0.99175 0.95414 0.89309 1.21542 0.98811
0.99624 0.93265 1.18964 0.94927 0.94450 0.92777 1.21673 1.18812
1.25301 0.92326 0.92293 1.25997 0.95835 0.95363 1.02638 1.70100
1.30232 1.33385 1.23709 0.85428 0.78272 0.79137 0.78100 1.19689
1.20595 1.18732 0.92074 0.93845 0.90416 0.91424 0.90025 0.94246
0.92176 0.91730 0.90582 0.91533 0.95584 0.91322 0.96518 0.91321
0.92936 0.92876 0.99367 0.99034 0.92737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.48 8.78 71.98 0.63 -2.85 16
2 C 0.08 1.91 2.16 44.93 0.10 2.01 16
3 H 0.03 0.88 6.52 -2.39 -0.02 0.87 16
4 C -0.10 -2.00 4.87 30.65 0.15 -1.85 16
5 C -0.09 -1.72 3.23 -10.69 -0.03 -1.75 16
6 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
7 C -0.15 -2.72 8.61 71.98 0.62 -2.10 16
8 C -0.11 -2.37 5.60 30.67 0.17 -2.20 16
9 C 0.04 1.30 4.60 86.32 0.40 1.70 16
10 N -0.54 -16.60 4.64 -871.11 -4.04 -20.65 16
11 C 0.07 2.55 4.36 86.30 0.38 2.93 16
12 C -0.09 -4.14 4.40 30.59 0.13 -4.00 16
13 C 0.03 1.45 4.97 29.85 0.15 1.60 16
14 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16
15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16
16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16
17 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16
18 Si 0.97 45.08 29.54 68.60 2.03 47.10 16
19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16
22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
23 H 0.04 1.16 6.55 -2.38 -0.02 1.15 16
24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
27 H 0.04 0.87 4.92 -2.39 -0.01 0.86 16
28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
29 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16
30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16
32 H 0.03 0.77 6.51 -2.38 -0.02 0.76 16
33 H 0.07 2.20 5.81 -2.39 -0.01 2.19 16
34 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16
35 H 0.07 2.59 6.84 -2.39 -0.02 2.57 16
36 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16
37 H 0.05 2.26 6.21 -2.39 -0.01 2.25 16
38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16
39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16
40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16
Total: -1.00 -64.30 300.13 2.63 -61.67
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: 0.97 Total: 7.44 kcal
Atomic # 6 Polarization: -41.17 SS G_CDS: 3.39 Total: -37.79 kcal
Atomic # 7 Polarization: -74.66 SS G_CDS: -3.76 Total: -78.42 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal
Total: -64.30 2.63 -61.67 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051731939.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.986 kcal
(2) G-P(sol) polarization free energy of solvation -64.299 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.685 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds