Wall clock time and date at job start Mon Mar 30 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46927 * 2 1 4 4 C 1.53039 * 109.46065 * 240.01851 * 2 1 3 5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1 6 6 H 1.08994 * 109.52349 * 177.58253 * 5 4 2 7 7 C 1.52997 * 109.52103 * 297.77359 * 5 4 2 8 8 C 1.53203 * 109.11533 * 57.63615 * 5 4 2 9 9 C 1.53030 * 109.30370 * 302.37368 * 8 5 4 10 10 N 1.46846 * 109.52435 * 59.17688 * 9 8 5 11 11 C 1.46902 * 111.00121 * 174.16395 * 10 9 8 12 12 C 1.53001 * 109.47122 * 314.21275 * 11 10 9 13 13 C 1.53000 * 109.47334 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47141 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00201 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99909 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00076 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47268 * 89.99422 * 18 16 14 20 20 H 1.48495 * 109.47194 * 209.99566 * 18 16 14 21 21 H 1.48510 * 109.46911 * 329.99494 * 18 16 14 22 22 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46858 * 299.98030 * 1 2 3 24 24 H 1.08994 * 109.47405 * 59.97623 * 1 2 3 25 25 H 1.09002 * 109.50563 * 300.74995 * 4 2 1 26 26 H 1.09003 * 109.50107 * 60.82976 * 4 2 1 27 27 H 1.08996 * 109.47898 * 59.99840 * 7 5 4 28 28 H 1.09002 * 109.47178 * 180.02562 * 7 5 4 29 29 H 1.09005 * 109.47225 * 299.99680 * 7 5 4 30 30 H 1.08997 * 109.49417 * 182.41991 * 8 5 4 31 31 H 1.09005 * 109.49195 * 62.32110 * 8 5 4 32 32 H 1.09004 * 109.46094 * 299.16423 * 9 8 5 33 33 H 1.08994 * 109.46717 * 179.19390 * 9 8 5 34 34 H 1.09004 * 109.46870 * 74.20602 * 11 10 9 35 35 H 1.08996 * 109.46981 * 194.20767 * 11 10 9 36 36 H 1.09006 * 109.46719 * 299.99979 * 12 11 10 37 37 H 1.09000 * 109.47049 * 59.99402 * 12 11 10 38 38 H 1.08997 * 109.46964 * 300.00264 * 13 12 11 39 39 H 1.09001 * 109.46636 * 59.99831 * 13 12 11 40 40 H 0.97002 * 119.99938 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 -1.2499 5 6 3.5709 -0.7363 -1.2366 6 1 3.9372 -1.2864 -2.1032 7 6 4.0968 0.6997 -1.2810 8 6 4.0547 -1.4189 0.0468 9 6 3.4864 -0.6778 1.2591 10 7 2.0193 -0.6918 1.1995 11 6 1.4373 -0.1104 2.4166 12 6 2.1497 -0.6801 3.6449 13 6 1.5441 -0.0742 4.9126 14 6 2.2454 -0.6359 6.1224 15 1 3.0430 -1.3536 5.9995 16 6 1.8680 -0.2343 7.3862 17 7 0.8964 0.6392 7.5359 18 14 2.7378 -0.9299 8.8859 19 1 3.8983 -0.0691 9.2287 20 1 1.7943 -0.9683 10.0319 21 1 3.2124 -2.3055 8.5891 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5136 0.8902 24 1 -0.3634 0.5142 -0.8897 25 1 1.6657 -1.7449 -1.2575 26 1 1.6888 -0.1988 -2.1399 27 1 3.7319 1.2475 -0.4123 28 1 5.1868 0.6879 -1.2720 29 1 3.7467 1.1869 -2.1911 30 1 5.1438 -1.3949 0.0833 31 1 3.7124 -2.4537 0.0597 32 1 3.8403 0.3532 1.2531 33 1 3.8174 -1.1698 2.1736 34 1 1.5589 0.9726 2.3959 35 1 0.3765 -0.3562 2.4652 36 1 2.0283 -1.7632 3.6655 37 1 3.2106 -0.4344 3.5961 38 1 1.6659 1.0087 4.8916 39 1 0.4832 -0.3197 4.9614 40 1 0.6312 0.9220 8.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051731939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:35 Heat of formation + Delta-G solvation = -44.685211 kcal Electronic energy + Delta-G solvation = -16171.148351 eV Core-core repulsion = 13790.786022 eV Total energy + Delta-G solvation = -2380.362330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71141 -36.75563 -35.15838 -33.79091 -32.43095 -29.31282 -27.74343 -27.50957 -25.31143 -23.90549 -22.02311 -21.35020 -19.48405 -18.49576 -16.96114 -16.43311 -16.34156 -15.99114 -15.46492 -15.37520 -14.70590 -14.47926 -14.19927 -13.68931 -13.51774 -13.18237 -12.97665 -12.79373 -12.72659 -12.55140 -12.43427 -12.34179 -12.19864 -11.90832 -11.63244 -11.40485 -11.40080 -11.23589 -10.95436 -10.85808 -10.55747 -9.13480 -8.21000 -6.32420 1.39224 1.40953 1.52322 2.40292 2.97153 3.12020 3.83796 3.84514 3.98205 4.16012 4.24099 4.30873 4.39789 4.46498 4.51370 4.60159 4.67447 4.73712 4.80760 4.88933 4.90875 4.98879 5.02002 5.07386 5.13539 5.17042 5.20090 5.25314 5.32875 5.35359 5.45814 5.49869 5.55266 5.72080 5.83407 6.16196 6.26610 6.33668 6.84085 7.36915 8.91100 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043608 B = 0.005343 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.935732 B = 5239.478840 C = 5628.235758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 H 0.033 0.967 4 C -0.100 4.100 5 C -0.092 4.092 6 H 0.087 0.913 7 C -0.149 4.149 8 C -0.107 4.107 9 C 0.045 3.955 10 N -0.536 5.536 11 C 0.069 3.931 12 C -0.095 4.095 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.060 0.940 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.053 0.947 38 H -0.012 1.012 39 H -0.009 1.009 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -2.043 -18.919 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 H 0.051 0.949 4 C -0.138 4.138 5 C -0.110 4.110 6 H 0.105 0.895 7 C -0.206 4.206 8 C -0.144 4.144 9 C -0.083 4.083 10 N -0.262 5.262 11 C -0.059 4.059 12 C -0.132 4.132 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.006 0.994 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.211 -2.438 -18.839 19.458 hybrid contribution 0.302 0.875 1.347 1.635 sum 4.514 -1.563 -17.492 18.133 Atomic orbital electron populations 1.21889 0.94157 1.02426 1.01897 1.21766 0.95670 0.95271 0.90572 0.94912 1.21640 0.95232 1.01021 0.95908 1.21192 0.95300 0.96600 0.97934 0.89460 1.21915 1.01102 0.96180 1.01418 1.21622 1.00105 0.99456 0.93265 1.22248 0.87421 0.98841 0.99760 1.62081 1.07410 1.55002 1.01690 1.22015 0.99175 0.95414 0.89309 1.21542 0.98811 0.99624 0.93265 1.18964 0.94927 0.94450 0.92777 1.21673 1.18812 1.25301 0.92326 0.92293 1.25997 0.95835 0.95363 1.02638 1.70100 1.30232 1.33385 1.23709 0.85428 0.78272 0.79137 0.78100 1.19689 1.20595 1.18732 0.92074 0.93845 0.90416 0.91424 0.90025 0.94246 0.92176 0.91730 0.90582 0.91533 0.95584 0.91322 0.96518 0.91321 0.92936 0.92876 0.99367 0.99034 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.78 71.98 0.63 -2.85 16 2 C 0.08 1.91 2.16 44.93 0.10 2.01 16 3 H 0.03 0.88 6.52 -2.39 -0.02 0.87 16 4 C -0.10 -2.00 4.87 30.65 0.15 -1.85 16 5 C -0.09 -1.72 3.23 -10.69 -0.03 -1.75 16 6 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.15 -2.72 8.61 71.98 0.62 -2.10 16 8 C -0.11 -2.37 5.60 30.67 0.17 -2.20 16 9 C 0.04 1.30 4.60 86.32 0.40 1.70 16 10 N -0.54 -16.60 4.64 -871.11 -4.04 -20.65 16 11 C 0.07 2.55 4.36 86.30 0.38 2.93 16 12 C -0.09 -4.14 4.40 30.59 0.13 -4.00 16 13 C 0.03 1.45 4.97 29.85 0.15 1.60 16 14 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.04 1.16 6.55 -2.38 -0.02 1.15 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 0.87 4.92 -2.39 -0.01 0.86 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.03 0.77 6.51 -2.38 -0.02 0.76 16 33 H 0.07 2.20 5.81 -2.39 -0.01 2.19 16 34 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 35 H 0.07 2.59 6.84 -2.39 -0.02 2.57 16 36 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.05 2.26 6.21 -2.39 -0.01 2.25 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -64.30 300.13 2.63 -61.67 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.97 Total: 7.44 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.39 Total: -37.79 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -3.76 Total: -78.42 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.30 2.63 -61.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.986 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds