Wall clock time and date at job start Mon Mar 30 2020 03:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.50701 * 109.47029 * 120.00019 * 2 1 3 5 5 H 1.07998 * 120.00099 * 120.00357 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00138 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 13 13 C 1.46900 * 110.99927 * 85.00135 * 12 2 1 14 14 H 1.09009 * 109.47093 * 325.00327 * 13 12 2 15 15 C 1.53002 * 109.47132 * 84.99987 * 13 12 2 16 16 C 1.52997 * 109.47067 * 59.99958 * 15 13 12 17 17 C 1.53000 * 109.46912 * 60.00038 * 16 15 13 18 18 H 1.08991 * 109.47169 * 60.00279 * 17 16 15 19 19 C 1.53003 * 109.47193 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47224 * 299.99866 * 17 16 15 21 21 C 1.52997 * 109.47067 * 60.00229 * 20 17 16 22 22 H 1.09001 * 109.47103 * 59.99641 * 21 20 17 23 23 C 1.52993 * 109.46954 * 180.02562 * 21 20 17 24 24 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 25 25 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 26 26 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 28 28 H 1.00900 * 110.99964 * 321.04966 * 12 2 1 29 29 H 1.09001 * 109.47452 * 180.02562 * 15 13 12 30 30 H 1.09004 * 109.46896 * 300.00228 * 15 13 12 31 31 H 1.09006 * 109.47215 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.47412 * 299.99911 * 16 15 13 33 33 H 1.09002 * 109.47188 * 59.99838 * 19 17 16 34 34 H 1.08995 * 109.47446 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.47536 * 300.00396 * 19 17 16 36 36 H 1.09004 * 109.47128 * 180.02562 * 20 17 16 37 37 H 1.09002 * 109.46931 * 300.00024 * 20 17 16 38 38 H 1.09009 * 109.46740 * 179.97438 * 23 21 20 39 39 H 1.08999 * 109.47480 * 299.99317 * 23 21 20 40 40 H 1.09004 * 109.47573 * 60.00347 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3211 -1.1204 4.0080 9 1 3.8062 -1.1209 4.0083 10 1 1.8257 -0.4206 5.2204 11 1 1.8256 -2.5203 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4112 0.9809 -2.3223 16 6 4.5690 -0.0162 -2.4011 17 6 4.4635 -0.8185 -3.6997 18 1 4.5102 -0.1395 -4.5510 19 6 5.6217 -1.8151 -3.7788 20 6 3.1349 -1.5768 -3.7242 21 6 1.9771 -0.5797 -3.6454 22 1 2.0238 0.0993 -4.4968 23 6 0.6485 -1.3381 -3.6694 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1614 3.4843 28 1 1.4496 -1.4979 -1.4101 29 1 3.4577 1.6602 -3.1735 30 1 3.4862 1.5524 -1.3972 31 1 5.5156 0.5241 -2.3841 32 1 4.5224 -0.6952 -1.5497 33 1 5.5756 -2.4942 -2.9274 34 1 5.5464 -2.3870 -4.7037 35 1 6.5681 -1.2746 -3.7615 36 1 3.0600 -2.1487 -4.6492 37 1 3.0883 -2.2558 -2.8728 38 1 -0.1763 -0.6277 -3.6127 39 1 0.5731 -1.9099 -4.5942 40 1 0.6021 -2.0168 -2.8177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069675766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:30 Heat of formation + Delta-G solvation = -47.530629 kcal Electronic energy + Delta-G solvation = -16786.704854 eV Core-core repulsion = 14406.219138 eV Total energy + Delta-G solvation = -2380.485716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43667 -36.93112 -34.73111 -33.41730 -32.08583 -29.13176 -27.42360 -27.20745 -26.18559 -23.07441 -21.98510 -21.24860 -19.73506 -18.37588 -16.89287 -16.31706 -16.09748 -15.68917 -14.87819 -14.76551 -14.54859 -14.10627 -13.79142 -13.54561 -13.32439 -13.14274 -12.94013 -12.84909 -12.60674 -12.54682 -12.48010 -12.17610 -12.04318 -11.84559 -11.75388 -11.55236 -11.20771 -10.96768 -10.80341 -10.65034 -10.45034 -8.79661 -8.07195 -6.17663 1.42352 1.44030 1.51634 2.44791 3.20941 3.69221 3.85336 3.93798 4.06825 4.28932 4.43366 4.51151 4.51484 4.70362 4.74530 4.77947 4.83786 4.89314 4.92417 4.97397 5.05106 5.11810 5.13998 5.16793 5.22525 5.26421 5.33042 5.46403 5.51542 5.57211 5.60339 5.62299 5.72172 5.84788 5.89289 6.33217 6.75130 6.93860 7.03861 7.52555 8.98173 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.008096 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.622601 B = 3457.456784 C = 3906.011945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.220 3.780 3 H -0.003 1.003 4 C -0.509 4.509 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.670 5.670 13 C 0.089 3.911 14 H 0.012 0.988 15 C -0.103 4.103 16 C -0.099 4.099 17 C -0.083 4.083 18 H 0.073 0.927 19 C -0.141 4.141 20 C -0.096 4.096 21 C -0.085 4.085 22 H 0.081 0.919 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.020 0.980 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.329 0.671 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -3.684 -13.918 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.111 3.889 3 H 0.015 0.985 4 C -0.548 4.548 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.303 5.303 13 C -0.021 4.021 14 H 0.030 0.970 15 C -0.141 4.141 16 C -0.136 4.136 17 C -0.101 4.101 18 H 0.091 0.909 19 C -0.199 4.199 20 C -0.134 4.134 21 C -0.104 4.104 22 H 0.100 0.900 23 C -0.205 4.205 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.691 -3.499 -13.617 14.821 hybrid contribution -0.960 0.157 1.200 1.545 sum 3.731 -3.342 -12.417 13.389 Atomic orbital electron populations 1.22231 1.00562 0.98915 0.99661 1.18873 0.89453 0.92561 0.88000 0.98513 1.21431 1.30000 1.12220 0.91100 0.92845 1.25710 0.95607 0.95905 1.01853 1.70012 1.38301 1.24387 1.23843 0.85621 0.78606 0.78719 0.78695 1.20008 1.21122 1.19655 1.60734 1.57384 1.09126 1.03012 1.21490 0.95564 0.93848 0.91194 0.96968 1.21465 0.95430 0.97460 0.99733 1.21360 0.96308 0.97614 0.98338 1.21053 0.95069 0.96993 0.97002 0.90851 1.21774 0.97608 0.98828 1.01643 1.21499 0.93063 0.97237 1.01565 1.21241 0.95655 0.97430 0.96041 0.90031 1.21856 0.96337 1.00123 1.02192 0.92284 0.96070 0.95131 0.93169 0.85127 0.91188 0.95463 0.92911 0.93031 0.93777 0.91586 0.92540 0.90900 0.92743 0.93562 0.90526 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.64 8.92 71.98 0.64 -6.99 16 2 C 0.22 11.33 2.38 44.17 0.11 11.44 16 3 H 0.00 -0.18 7.11 -2.39 -0.02 -0.19 16 4 C -0.51 -28.75 8.84 25.60 0.23 -28.52 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.92 -54.61 11.32 21.45 0.24 -54.37 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.67 -28.11 4.56 -473.29 -2.16 -30.27 16 13 C 0.09 3.17 2.11 44.92 0.09 3.27 16 14 H 0.01 0.48 7.11 -2.38 -0.02 0.47 16 15 C -0.10 -3.54 5.52 30.59 0.17 -3.37 16 16 C -0.10 -3.10 5.05 30.59 0.15 -2.94 16 17 C -0.08 -2.05 2.72 -10.79 -0.03 -2.08 16 18 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 20 C -0.10 -2.43 4.33 30.59 0.13 -2.29 16 21 C -0.08 -2.29 2.49 -10.80 -0.03 -2.32 16 22 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 23 C -0.15 -3.74 8.96 71.98 0.64 -3.10 16 24 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 25 H 0.02 0.93 7.43 -2.38 -0.02 0.91 16 26 H 0.03 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.33 13.19 5.74 -89.69 -0.52 12.67 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.03 1.10 7.43 -2.38 -0.02 1.09 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.05 1.95 7.60 -2.39 -0.02 1.94 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.05 1.61 7.48 -2.39 -0.02 1.59 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.32 6.21 -2.38 -0.01 1.31 16 Total: -1.00 -60.08 300.41 3.80 -56.28 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.46 Total: 19.90 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.22 Total: -38.48 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -1.91 Total: -84.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -60.08 3.80 -56.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069675766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.747 kcal (2) G-P(sol) polarization free energy of solvation -60.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds