Wall clock time and date at job start Mon Mar 30 2020 03:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.52999 * 109.46991 * 120.00842 * 2 1 3 5 5 C 1.52997 * 109.46991 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47131 * 299.99311 * 5 4 2 7 7 H 1.08996 * 109.47452 * 300.00000 * 6 5 4 8 8 N 1.46909 * 109.47268 * 180.02562 * 6 5 4 9 9 C 1.46896 * 110.99913 * 183.95676 * 8 6 5 10 10 C 1.46898 * 110.99717 * 60.00215 * 8 6 5 11 11 C 1.50696 * 109.46981 * 190.00137 * 10 8 6 12 12 H 1.07996 * 120.00221 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99936 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00182 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47449 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47352 * 120.00158 * 15 13 11 18 18 H 1.48501 * 109.47223 * 239.99716 * 15 13 11 19 19 C 1.53002 * 109.46972 * 60.00459 * 6 5 4 20 20 C 1.52997 * 109.46817 * 299.99733 * 19 6 5 21 21 H 1.09001 * 109.47502 * 300.00518 * 20 19 6 22 22 C 1.52999 * 109.47317 * 179.97438 * 20 19 6 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 25 25 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 26 26 H 1.09002 * 109.46719 * 299.99711 * 4 2 1 27 27 H 1.08993 * 109.47839 * 59.99553 * 4 2 1 28 28 H 1.09001 * 109.47289 * 179.97438 * 5 4 2 29 29 H 1.09000 * 109.47611 * 59.99933 * 5 4 2 30 30 H 1.08994 * 109.47432 * 60.00203 * 9 8 6 31 31 H 1.09006 * 109.46730 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47204 * 299.99801 * 9 8 6 33 33 H 1.09009 * 109.47338 * 310.00267 * 10 8 6 34 34 H 1.09000 * 109.47354 * 69.99858 * 10 8 6 35 35 H 0.97003 * 120.00005 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47070 * 179.97438 * 19 6 5 37 37 H 1.08996 * 109.47407 * 59.99513 * 19 6 5 38 38 H 1.09001 * 109.47362 * 300.00732 * 22 20 19 39 39 H 1.09002 * 109.46716 * 60.00091 * 22 20 19 40 40 H 1.09000 * 109.47486 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5699 -0.7209 1.2495 6 6 4.0804 -1.4417 0.0002 7 1 3.7175 -2.4695 -0.0001 8 7 5.5495 -1.4417 0.0008 9 6 6.0764 -2.0434 -1.2313 10 6 6.0754 -2.1279 1.1885 11 6 7.5616 -1.8980 1.2844 12 1 8.0653 -1.3022 0.5377 13 6 8.2787 -2.4493 2.3251 14 7 7.6655 -3.1753 3.2343 15 14 10.1211 -2.1649 2.4437 16 1 10.5660 -1.3207 1.3058 17 1 10.4348 -1.4783 3.7225 18 1 10.8275 -3.4703 2.3967 19 6 3.5705 -0.7203 -1.2490 20 6 2.0405 -0.7209 -1.2493 21 1 1.6775 -1.7487 -1.2495 22 6 1.5305 0.0010 -2.4981 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6766 -0.2076 2.1392 27 1 1.6766 -1.7490 1.2491 28 1 3.9333 -1.2344 2.1396 29 1 3.9330 0.3069 1.2498 30 1 5.7273 -1.4734 -2.0922 31 1 7.1661 -2.0311 -1.2045 32 1 5.7270 -3.0728 -1.3112 33 1 5.5885 -1.7344 2.0809 34 1 5.8775 -3.1967 1.1081 35 1 8.1700 -3.5628 3.9667 36 1 3.9346 -1.2336 -2.1390 37 1 3.9334 0.3075 -1.2487 38 1 1.8935 1.0288 -2.4975 39 1 1.8942 -0.5121 -3.3884 40 1 0.4405 0.0011 -2.4982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082841881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:04 Heat of formation + Delta-G solvation = -26.911492 kcal Electronic energy + Delta-G solvation = -16409.240869 eV Core-core repulsion = 14029.649265 eV Total energy + Delta-G solvation = -2379.591603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21415 -36.04973 -32.65912 -32.09140 -30.88083 -27.74526 -26.29714 -25.85750 -23.78546 -21.55248 -21.34361 -19.52300 -19.13363 -16.39477 -15.09730 -14.78774 -14.53167 -14.41113 -14.05163 -13.63855 -13.21255 -12.94518 -12.56746 -12.31678 -12.02407 -11.82635 -11.78766 -11.59303 -11.17655 -10.93701 -10.75748 -10.66541 -10.63215 -10.49990 -10.43155 -10.21343 -9.97485 -9.72590 -9.26981 -9.08142 -8.37439 -7.12958 -5.98702 -3.99131 3.33068 3.40331 3.45499 4.45359 4.77113 4.84609 4.93198 5.21463 5.26406 5.36939 5.52154 5.56580 5.59698 5.75212 5.78421 5.79739 5.91882 5.97738 6.02500 6.07188 6.10550 6.13751 6.23697 6.26129 6.37868 6.47915 6.51016 6.60510 6.66089 6.76828 6.84926 6.92469 7.40972 7.42764 7.86786 8.17956 8.29971 8.64329 9.09199 9.64658 11.12309 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047816 B = 0.006089 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.436376 B = 4597.122624 C = 4982.137432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.113 4.113 6 C 0.087 3.913 7 H 0.025 0.975 8 N -0.538 5.538 9 C 0.036 3.964 10 C 0.188 3.812 11 C -0.504 4.504 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.286 1.286 19 C -0.106 4.106 20 C -0.085 4.085 21 H 0.064 0.936 22 C -0.146 4.146 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.037 0.963 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 5.026 -7.797 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.022 4.022 7 H 0.043 0.957 8 N -0.262 5.262 9 C -0.113 4.113 10 C 0.063 3.937 11 C -0.543 4.543 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.144 4.144 20 C -0.104 4.104 21 H 0.083 0.917 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.005 0.995 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.299 5.410 -7.615 15.444 hybrid contribution 0.782 -0.876 0.197 1.191 sum -11.517 4.534 -7.419 14.430 Atomic orbital electron populations 1.21897 0.95921 1.01480 1.01218 1.21167 0.94704 0.99708 0.94877 0.91299 1.21591 0.96324 1.00136 0.96914 1.21613 0.93593 1.01516 0.98305 1.21509 0.89624 0.96524 0.94523 0.95738 1.62146 1.04271 1.55949 1.03877 1.22238 1.01458 0.95329 0.92236 1.19807 0.95360 0.91287 0.87233 1.21234 0.92512 1.30916 1.09597 0.91897 1.24989 0.98627 0.95350 0.95741 1.69973 1.35779 1.34579 1.13667 0.86468 0.85339 0.77794 0.77978 1.19683 1.21039 1.21182 1.21690 0.93596 1.01392 0.97736 1.21145 0.95821 0.99244 0.94218 0.91707 1.21873 1.00573 1.00481 0.97431 0.92987 0.93051 0.92727 0.92279 0.92462 0.91083 0.91528 0.93403 0.90939 0.97415 0.94523 0.99509 0.93068 0.92278 0.91473 0.92820 0.93058 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.84 37.16 0.33 -1.18 16 2 C -0.09 -1.05 2.25 -90.62 -0.20 -1.26 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.56 5.20 -26.73 -0.14 -1.70 16 5 C -0.11 -1.98 5.00 -26.73 -0.13 -2.12 16 6 C 0.09 1.62 1.94 -67.71 -0.13 1.49 16 7 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 8 N -0.54 -11.97 4.62 -236.33 -1.09 -13.06 16 9 C 0.04 0.73 8.92 60.06 0.54 1.27 16 10 C 0.19 5.01 4.54 -4.98 -0.02 4.99 16 11 C -0.50 -14.43 8.46 -34.44 -0.29 -14.72 16 12 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 15 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C -0.11 -1.62 4.12 -26.73 -0.11 -1.73 16 20 C -0.09 -1.07 2.25 -90.62 -0.20 -1.28 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.15 -1.55 8.84 37.16 0.33 -1.22 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.42 6.20 -51.93 -0.32 1.10 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.83 6.24 -51.93 -0.32 0.50 16 31 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.04 1.03 5.83 -51.92 -0.30 0.72 16 34 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.51 6.43 -51.93 -0.33 0.17 16 LS Contribution 300.07 15.07 4.52 4.52 Total: -1.00 -29.59 300.07 -8.30 -37.88 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.30 Total: -3.85 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.14 Total: -16.01 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.36 Total: -39.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.59 -8.30 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082841881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.972 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds