Wall clock time and date at job start Mon Mar 30 2020 03:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.52999 * 109.46991 * 120.00842 * 2 1 3 5 5 C 1.52997 * 109.46991 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47131 * 299.99311 * 5 4 2 7 7 H 1.08996 * 109.47452 * 300.00000 * 6 5 4 8 8 N 1.46909 * 109.47268 * 180.02562 * 6 5 4 9 9 C 1.46896 * 110.99913 * 183.95676 * 8 6 5 10 10 C 1.46898 * 110.99717 * 60.00215 * 8 6 5 11 11 C 1.50696 * 109.46981 * 190.00137 * 10 8 6 12 12 H 1.07996 * 120.00221 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99936 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00182 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47449 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47352 * 120.00158 * 15 13 11 18 18 H 1.48501 * 109.47223 * 239.99716 * 15 13 11 19 19 C 1.53002 * 109.46972 * 60.00459 * 6 5 4 20 20 C 1.52997 * 109.46817 * 299.99733 * 19 6 5 21 21 H 1.09001 * 109.47502 * 300.00518 * 20 19 6 22 22 C 1.52999 * 109.47317 * 179.97438 * 20 19 6 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 25 25 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 26 26 H 1.09002 * 109.46719 * 299.99711 * 4 2 1 27 27 H 1.08993 * 109.47839 * 59.99553 * 4 2 1 28 28 H 1.09001 * 109.47289 * 179.97438 * 5 4 2 29 29 H 1.09000 * 109.47611 * 59.99933 * 5 4 2 30 30 H 1.08994 * 109.47432 * 60.00203 * 9 8 6 31 31 H 1.09006 * 109.46730 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47204 * 299.99801 * 9 8 6 33 33 H 1.09009 * 109.47338 * 310.00267 * 10 8 6 34 34 H 1.09000 * 109.47354 * 69.99858 * 10 8 6 35 35 H 0.97003 * 120.00005 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47070 * 179.97438 * 19 6 5 37 37 H 1.08996 * 109.47407 * 59.99513 * 19 6 5 38 38 H 1.09001 * 109.47362 * 300.00732 * 22 20 19 39 39 H 1.09002 * 109.46716 * 60.00091 * 22 20 19 40 40 H 1.09000 * 109.47486 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5699 -0.7209 1.2495 6 6 4.0804 -1.4417 0.0002 7 1 3.7175 -2.4695 -0.0001 8 7 5.5495 -1.4417 0.0008 9 6 6.0764 -2.0434 -1.2313 10 6 6.0754 -2.1279 1.1885 11 6 7.5616 -1.8980 1.2844 12 1 8.0653 -1.3022 0.5377 13 6 8.2787 -2.4493 2.3251 14 7 7.6655 -3.1753 3.2343 15 14 10.1211 -2.1649 2.4437 16 1 10.5660 -1.3207 1.3058 17 1 10.4348 -1.4783 3.7225 18 1 10.8275 -3.4703 2.3967 19 6 3.5705 -0.7203 -1.2490 20 6 2.0405 -0.7209 -1.2493 21 1 1.6775 -1.7487 -1.2495 22 6 1.5305 0.0010 -2.4981 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6766 -0.2076 2.1392 27 1 1.6766 -1.7490 1.2491 28 1 3.9333 -1.2344 2.1396 29 1 3.9330 0.3069 1.2498 30 1 5.7273 -1.4734 -2.0922 31 1 7.1661 -2.0311 -1.2045 32 1 5.7270 -3.0728 -1.3112 33 1 5.5885 -1.7344 2.0809 34 1 5.8775 -3.1967 1.1081 35 1 8.1700 -3.5628 3.9667 36 1 3.9346 -1.2336 -2.1390 37 1 3.9334 0.3075 -1.2487 38 1 1.8935 1.0288 -2.4975 39 1 1.8942 -0.5121 -3.3884 40 1 0.4405 0.0011 -2.4982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082841881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:04 Heat of formation + Delta-G solvation = -44.452764 kcal Electronic energy + Delta-G solvation = -16410.001515 eV Core-core repulsion = 14029.649265 eV Total energy + Delta-G solvation = -2380.352250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52245 -37.61265 -34.75654 -33.27158 -32.25666 -29.51214 -27.62472 -27.38039 -25.29398 -23.33479 -22.53582 -20.73293 -20.59327 -18.57110 -16.81469 -16.45930 -16.02851 -15.54273 -15.46230 -14.98787 -14.71732 -14.42127 -14.06230 -13.74421 -13.50061 -13.21198 -12.94675 -12.85013 -12.67092 -12.61925 -12.42297 -12.20521 -12.08054 -11.92214 -11.81019 -11.68536 -11.36594 -11.22048 -10.89510 -10.71159 -10.53582 -8.99771 -8.21070 -6.31038 1.39650 1.40287 1.54260 2.39625 3.10982 3.27650 3.75898 3.79966 4.04557 4.16854 4.23596 4.42891 4.51625 4.55077 4.58712 4.66950 4.69689 4.78309 4.80786 4.97308 4.98987 5.02533 5.04290 5.15283 5.16495 5.19419 5.22733 5.24580 5.34889 5.38100 5.41942 5.48279 5.61150 5.65204 5.69999 6.07538 6.37265 6.68885 6.86050 7.38577 8.90459 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047816 B = 0.006089 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.436376 B = 4597.122624 C = 4982.137432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.069 0.931 4 C -0.105 4.105 5 C -0.109 4.109 6 C 0.084 3.916 7 H 0.010 0.990 8 N -0.546 5.546 9 C 0.039 3.961 10 C 0.204 3.796 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.278 1.278 19 C -0.097 4.097 20 C -0.082 4.082 21 H 0.062 0.938 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.004 0.996 33 H 0.015 0.985 34 H -0.049 1.049 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.166 6.227 -9.201 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.088 0.912 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.024 4.024 7 H 0.028 0.972 8 N -0.270 5.270 9 C -0.109 4.109 10 C 0.078 3.922 11 C -0.561 4.561 12 H 0.080 0.920 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.204 1.204 19 C -0.135 4.135 20 C -0.101 4.101 21 H 0.081 0.919 22 C -0.198 4.198 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.033 0.967 34 H -0.031 1.031 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.975 6.620 -9.039 17.143 hybrid contribution 0.958 -1.270 0.645 1.717 sum -12.017 5.350 -8.394 15.604 Atomic orbital electron populations 1.21850 0.93766 1.01987 1.02397 1.21145 0.96423 0.99185 0.93381 0.91226 1.21557 0.93227 1.00687 0.98873 1.21554 0.96478 1.00276 0.96378 1.21671 0.87308 0.96436 0.97007 0.97204 1.62114 1.06730 1.55098 1.03055 1.22248 1.00449 0.95751 0.92489 1.19450 0.94906 0.89255 0.88585 1.21529 0.93542 1.31157 1.09884 0.91966 1.25942 1.03943 0.94770 0.95138 1.70104 1.37948 1.35370 1.14299 0.85312 0.78813 0.78027 0.78323 1.18682 1.20288 1.20380 1.21630 0.95745 1.00513 0.95585 1.21128 0.93562 0.99688 0.95718 0.91921 1.21828 1.01626 1.00274 0.96095 0.92819 0.92366 0.91134 0.91120 0.92623 0.94665 0.92138 0.89828 0.92602 0.97741 0.96712 1.03101 0.92713 0.91774 0.91651 0.92476 0.92600 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.84 71.98 0.64 -1.83 16 2 C -0.08 -1.85 2.25 -10.79 -0.02 -1.87 16 3 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.11 -2.89 5.20 30.59 0.16 -2.73 16 5 C -0.11 -3.97 5.00 30.59 0.15 -3.81 16 6 C 0.08 3.18 1.94 44.91 0.09 3.27 16 7 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 8 N -0.55 -24.91 4.62 -901.61 -4.17 -29.08 16 9 C 0.04 1.58 8.92 127.69 1.14 2.72 16 10 C 0.20 11.43 4.54 85.56 0.39 11.82 16 11 C -0.52 -30.74 8.46 25.60 0.22 -30.52 16 12 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 14 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 15 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C -0.10 -2.82 4.12 30.59 0.13 -2.69 16 20 C -0.08 -1.88 2.25 -10.79 -0.02 -1.90 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 C -0.14 -2.50 8.84 71.98 0.64 -1.86 16 23 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.02 6.43 -2.39 -0.02 1.00 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.50 6.20 -2.39 -0.01 1.49 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.77 6.24 -2.39 -0.01 2.76 16 31 H 0.06 2.43 6.76 -2.38 -0.02 2.41 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.01 0.89 5.83 -2.38 -0.01 0.87 16 34 H -0.05 -3.00 8.12 -2.39 -0.02 -3.02 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.06 1.79 6.35 -2.39 -0.02 1.77 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.05 6.43 -2.39 -0.02 1.03 16 Total: -1.00 -65.18 300.07 3.07 -62.11 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.97 Total: 6.24 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.96 Total: -28.97 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.88 Total: -86.73 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -65.18 3.07 -62.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082841881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.660 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds