Wall clock time and date at job start Mon Mar 30 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.50137 * 2 1 4 4 C 1.53116 * 109.50319 * 239.92146 * 2 1 3 5 5 C 1.53122 * 109.15935 * 182.36476 * 4 2 1 6 6 C 1.53037 * 109.27817 * 57.65586 * 5 4 2 7 7 H 1.09002 * 109.46480 * 60.83456 * 6 5 4 8 8 C 1.53000 * 109.45231 * 180.81086 * 6 5 4 9 9 N 1.46845 * 109.52164 * 300.82117 * 6 5 4 10 10 C 1.46906 * 111.00009 * 185.84069 * 9 6 5 11 11 C 1.52998 * 109.47259 * 165.47973 * 10 9 6 12 12 C 1.52998 * 109.46945 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46918 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00209 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99867 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00226 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99865 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46793 * 90.00576 * 17 15 13 19 19 H 1.48506 * 109.46995 * 210.00384 * 17 15 13 20 20 H 1.48492 * 109.47024 * 330.00435 * 17 15 13 21 21 C 1.46842 * 111.20063 * 61.74139 * 9 6 5 22 22 H 1.08999 * 109.46850 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46967 * 300.07643 * 1 2 3 24 24 H 1.08993 * 109.47211 * 60.07753 * 1 2 3 25 25 H 1.09004 * 109.51995 * 62.45964 * 4 2 1 26 26 H 1.08998 * 109.52535 * 302.26854 * 4 2 1 27 27 H 1.09001 * 109.50321 * 297.71682 * 5 4 2 28 28 H 1.08994 * 109.53629 * 177.61610 * 5 4 2 29 29 H 1.09005 * 109.47099 * 187.34322 * 8 6 5 30 30 H 1.09000 * 109.46946 * 307.34129 * 8 6 5 31 31 H 1.09001 * 109.47299 * 67.34080 * 8 6 5 32 32 H 1.09005 * 109.46759 * 45.47913 * 10 9 6 33 33 H 1.08997 * 109.46942 * 285.48044 * 10 9 6 34 34 H 1.08997 * 109.47445 * 59.99983 * 11 10 9 35 35 H 1.09005 * 109.47059 * 299.99633 * 11 10 9 36 36 H 1.09005 * 109.46674 * 299.99540 * 12 11 10 37 37 H 1.08996 * 109.47926 * 60.00051 * 12 11 10 38 38 H 0.97003 * 120.00057 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.46316 * 58.27481 * 21 9 6 40 40 H 1.09008 * 109.46401 * 178.23814 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2489 5 6 3.5713 -0.7706 -1.2114 6 6 4.0238 -1.4716 0.0715 7 1 3.6389 -2.4913 0.0834 8 6 5.5527 -1.5030 0.1228 9 7 3.5101 -0.7411 1.2372 10 6 4.0388 -1.3047 2.4866 11 6 3.7880 -0.3248 3.6344 12 6 4.3392 -0.9115 4.9355 13 6 4.0927 0.0540 6.0660 14 1 3.5925 0.9920 5.8757 15 6 4.5048 -0.2607 7.3436 16 7 5.1135 -1.4033 7.5755 17 14 4.1999 0.9364 8.7448 18 1 2.8824 0.6465 9.3656 19 1 5.2703 0.7890 9.7636 20 1 4.2047 2.3252 8.2192 21 6 2.0418 -0.7233 1.2478 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5151 0.8894 24 1 -0.3633 0.5126 -0.8906 25 1 1.7151 -0.1866 -2.1398 26 1 1.6459 -1.7389 -1.2692 27 1 3.9673 0.2447 -1.2304 28 1 3.9402 -1.3214 -2.0766 29 1 5.8754 -2.1136 0.9662 30 1 5.9385 -1.9295 -0.8031 31 1 5.9332 -0.4886 0.2419 32 1 5.1102 -1.4764 2.3829 33 1 3.5384 -2.2494 2.6994 34 1 2.7166 -0.1531 3.7381 35 1 4.2885 0.6199 3.4216 36 1 3.8390 -1.8563 5.1485 37 1 5.4106 -1.0829 4.8317 38 1 5.4037 -1.6245 8.4743 39 1 1.6662 -1.7465 1.2542 40 1 1.6913 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084047600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:36 Heat of formation + Delta-G solvation = -32.563067 kcal Electronic energy + Delta-G solvation = -16030.200766 eV Core-core repulsion = 13650.364092 eV Total energy + Delta-G solvation = -2379.836674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34944 -35.10720 -33.70643 -32.59820 -30.63308 -28.81415 -26.67778 -24.82891 -23.83256 -22.17855 -20.48467 -19.80195 -19.52363 -16.26241 -15.70376 -15.05442 -14.61753 -14.39168 -14.35224 -13.92164 -13.55951 -12.96421 -12.70356 -12.48132 -12.18085 -11.73019 -11.67977 -11.61843 -11.52004 -11.18924 -10.85452 -10.73282 -10.68828 -10.51945 -10.48116 -10.14206 -10.01527 -9.48001 -9.25074 -8.99576 -8.29877 -7.93835 -5.95348 -3.97070 3.34996 3.40926 3.45019 4.14127 4.50700 4.76247 4.87056 4.88545 5.06687 5.35400 5.40430 5.43779 5.53721 5.56661 5.66425 5.71418 5.73047 5.80901 5.90548 5.95324 5.99033 5.99112 6.13350 6.15102 6.21891 6.30081 6.34152 6.45304 6.51559 6.79157 6.89475 7.21212 7.51220 7.53707 7.74265 7.89977 8.05754 8.49588 9.10272 9.66665 11.16163 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.005464 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.959720 B = 5123.398310 C = 5683.127151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.111 4.111 6 C 0.080 3.920 7 H 0.033 0.967 8 C -0.149 4.149 9 N -0.534 5.534 10 C 0.051 3.949 11 C -0.102 4.102 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.060 3.940 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.012 0.988 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.027 0.973 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 0.172 -17.433 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.028 4.028 7 H 0.051 0.949 8 C -0.206 4.206 9 N -0.259 5.259 10 C -0.076 4.076 11 C -0.140 4.140 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.791 0.546 -17.330 17.989 hybrid contribution -0.431 -0.329 0.976 1.117 sum -5.222 0.217 -16.354 17.169 Atomic orbital electron populations 1.21793 0.95310 1.01590 1.01669 1.21174 0.94809 1.00426 0.94478 0.90424 1.21640 0.95763 1.00199 0.97638 1.21622 0.95490 1.01451 0.96276 1.21572 0.95283 0.94881 0.91112 0.94899 1.21930 0.94573 1.02801 1.01310 1.62014 1.07397 1.54161 1.02307 1.22386 0.99917 0.96563 0.88756 1.21620 1.00144 0.97920 0.94337 1.19076 0.96140 0.96046 0.90350 1.21264 1.37521 1.03864 0.92861 0.92710 1.25026 0.95308 0.95315 0.98864 1.69969 1.40181 1.22431 1.21111 0.86608 0.77794 0.81588 0.82106 1.20730 1.21256 1.19859 1.22150 0.87818 0.98514 0.98346 0.92976 0.92422 0.92798 0.92184 0.92560 0.91154 0.92052 0.92202 0.92685 0.91573 0.90657 0.95614 0.93659 0.92714 0.96929 0.96664 0.93091 0.95519 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.20 37.16 0.34 -1.15 16 2 C -0.09 -1.07 2.88 -90.54 -0.26 -1.33 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.23 5.29 -26.61 -0.14 -1.37 16 5 C -0.11 -1.24 5.37 -26.65 -0.14 -1.39 16 6 C 0.08 1.07 2.44 -67.72 -0.17 0.90 16 7 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 8 C -0.15 -1.87 8.56 37.16 0.32 -1.55 16 9 N -0.53 -8.40 4.46 -226.69 -1.01 -9.41 16 10 C 0.05 0.92 4.75 -3.82 -0.02 0.91 16 11 C -0.10 -2.21 5.17 -26.73 -0.14 -2.35 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 17 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 C 0.06 0.87 4.59 -3.84 -0.02 0.85 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.36 5.61 -51.93 -0.29 1.07 16 33 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 34 H 0.04 0.97 6.59 -51.93 -0.34 0.62 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 1.28 6.42 -51.92 -0.33 0.94 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -30.03 307.73 -9.04 -39.07 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -7.60 Total: -4.76 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.77 Total: -19.84 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.27 Total: -36.14 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.03 -9.04 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084047600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.506 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds