Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47333 * 2 1 4 4 H 1.09006 * 109.47335 * 55.00020 * 3 2 1 5 5 C 1.50696 * 109.47268 * 174.99809 * 3 2 1 6 6 H 1.08002 * 119.99886 * 115.12855 * 5 3 2 7 7 C 1.37876 * 120.00330 * 295.12416 * 5 3 2 8 8 N 1.31513 * 120.00367 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99947 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47396 * 89.99442 * 9 7 5 11 11 H 1.48494 * 109.47178 * 210.00105 * 9 7 5 12 12 H 1.48504 * 109.46518 * 329.99668 * 9 7 5 13 13 N 1.46899 * 109.47470 * 295.00170 * 3 2 1 14 14 C 1.47472 * 111.00414 * 173.25721 * 13 3 2 15 15 C 1.53507 * 87.93390 * 221.29492 * 14 13 3 16 16 C 1.53004 * 114.16910 * 139.67111 * 15 14 13 17 17 C 1.52997 * 109.47143 * 321.66237 * 16 15 14 18 18 C 1.52999 * 109.47186 * 81.66606 * 16 15 14 19 19 C 1.53004 * 109.47132 * 201.66461 * 16 15 14 20 20 C 1.47479 * 110.99929 * 77.28609 * 13 3 2 21 21 H 1.09003 * 109.47192 * 59.99990 * 1 2 3 22 22 H 1.08996 * 109.47608 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47419 * 300.00144 * 1 2 3 24 24 H 1.08996 * 109.46951 * 240.00036 * 2 1 3 25 25 H 1.09003 * 109.47192 * 120.00009 * 2 1 3 26 26 H 0.96996 * 120.00552 * 180.02562 * 8 7 5 27 27 H 1.09004 * 113.47943 * 336.06329 * 14 13 3 28 28 H 1.09008 * 113.47878 * 106.52883 * 14 13 3 29 29 H 1.08997 * 114.17405 * 272.37662 * 15 14 13 30 30 H 1.09000 * 109.47132 * 66.74201 * 17 16 15 31 31 H 1.09004 * 109.46988 * 186.73611 * 17 16 15 32 32 H 1.08995 * 109.47635 * 306.73783 * 17 16 15 33 33 H 1.08998 * 109.47313 * 59.99609 * 18 16 15 34 34 H 1.09004 * 109.47346 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.47281 * 299.99725 * 18 16 15 36 36 H 1.08997 * 109.46937 * 59.99569 * 19 16 15 37 37 H 1.09004 * 109.47004 * 180.02562 * 19 16 15 38 38 H 1.08998 * 109.46821 * 300.00056 * 19 16 15 39 39 H 1.09008 * 113.47383 * 253.47194 * 20 13 3 40 40 H 1.08998 * 113.47976 * 23.88077 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1501 1.8173 -0.6869 7 6 4.1395 0.9697 1.2722 8 7 5.4502 0.9708 1.3801 9 14 3.0875 0.3239 2.6743 10 1 2.8565 -1.1314 2.4902 11 1 3.7858 0.5551 3.9642 12 1 1.7837 1.0349 2.6829 13 7 1.6514 2.0993 -1.2552 14 6 1.9848 3.5355 -1.2254 15 6 0.6334 3.8064 -1.9014 16 6 -0.1020 5.0347 -1.3615 17 6 0.0928 5.1207 0.1536 18 6 0.4599 6.2960 -2.0205 19 6 -1.5942 4.9156 -1.6779 20 6 0.2285 2.4863 -1.2307 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8707 0.6367 2.1878 27 1 2.0557 3.9441 -0.2173 28 1 2.8414 3.7955 -1.8475 29 1 0.6624 3.7634 -2.9901 30 1 1.1404 5.3254 0.3742 31 1 -0.5263 5.9233 0.5545 32 1 -0.1970 4.1750 0.6115 33 1 0.3212 6.2347 -3.0998 34 1 -0.0637 7.1712 -1.6356 35 1 1.5230 6.3810 -1.7951 36 1 -1.9945 4.0170 -1.2085 37 1 -2.1181 5.7909 -1.2937 38 1 -1.7330 4.8543 -2.7573 39 1 -0.4035 1.8569 -1.8573 40 1 -0.1696 2.6138 -0.2240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = 25.721642 kcal Electronic energy + Delta-G solvation = -16925.322019 eV Core-core repulsion = 14548.012760 eV Total energy + Delta-G solvation = -2377.309260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25569 -36.20174 -33.53531 -31.89314 -28.66679 -27.35971 -27.18155 -25.77532 -24.61597 -22.68938 -20.64776 -19.45901 -17.70879 -16.81240 -15.61816 -15.37237 -14.55672 -14.12873 -13.91873 -13.33353 -13.05657 -12.84395 -12.41790 -12.30636 -12.17451 -11.92832 -11.79166 -11.76336 -11.44205 -11.31081 -10.93600 -10.75420 -10.70760 -10.44736 -10.16852 -9.86401 -9.75983 -9.58970 -9.16293 -8.97869 -8.53881 -7.81900 -6.07056 -4.05556 3.25880 3.35510 3.36711 4.39414 4.75330 4.78953 4.96744 5.19679 5.23263 5.37836 5.52390 5.67902 5.74335 5.80562 5.86554 5.88362 5.91648 5.97121 6.02263 6.04740 6.15774 6.19149 6.24734 6.26466 6.37327 6.44581 6.49301 6.51037 6.60793 6.67010 6.71752 6.87711 6.89016 7.14799 7.45373 7.80655 8.02495 8.63244 9.01242 9.55363 11.06016 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.008803 C = 0.008063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.224177 B = 3180.074068 C = 3471.690628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.006 0.994 5 C -0.504 4.504 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.266 1.266 13 N -0.457 5.457 14 C 0.022 3.978 15 C -0.117 4.117 16 C -0.058 4.058 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.137 4.137 20 C -0.001 4.001 21 H 0.066 0.934 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 7.019 -3.923 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.023 0.977 5 C -0.542 4.542 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.191 1.191 13 N -0.179 5.179 14 C -0.107 4.107 15 C -0.135 4.135 16 C -0.059 4.059 17 C -0.205 4.205 18 C -0.195 4.195 19 C -0.194 4.194 20 C -0.130 4.130 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.476 6.494 -4.296 14.707 hybrid contribution -0.641 -0.136 1.662 1.787 sum -13.118 6.358 -2.634 14.814 Atomic orbital electron populations 1.22220 0.98394 1.00274 1.01484 1.21821 0.92991 0.99622 1.01230 1.20257 0.97059 0.91037 0.86995 0.97684 1.20929 0.88780 1.41756 1.02771 0.90264 1.24923 0.94738 0.95393 0.98010 1.69885 1.08682 1.47126 1.28065 0.86954 0.80853 0.79628 0.81798 1.20338 1.22179 1.19125 1.68809 1.03622 1.10490 1.34962 1.23625 0.96073 0.90851 1.00132 1.22940 0.97236 0.93463 0.99896 1.20414 0.95047 0.94999 0.95431 1.22064 1.02025 1.01498 0.94962 1.21815 1.01098 0.96477 1.00062 1.21811 0.95175 1.01269 1.01152 1.23996 0.94667 0.94863 0.99485 0.91542 0.94242 0.94120 0.91615 0.93306 0.92663 0.90984 0.91112 0.88987 0.91898 0.93204 0.92418 0.92926 0.93216 0.92419 0.92692 0.93210 0.92901 0.90992 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.84 37.16 0.33 -2.71 16 2 C -0.12 -2.66 5.18 -26.74 -0.14 -2.80 16 3 C 0.15 3.70 0.92 -68.87 -0.06 3.64 16 4 H 0.01 0.14 6.27 -51.93 -0.33 -0.19 16 5 C -0.50 -14.31 8.69 -34.44 -0.30 -14.61 16 6 H 0.08 2.48 8.02 -52.49 -0.42 2.06 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.88 22.06 24.65 -169.99 -4.19 17.87 16 10 H -0.28 -6.82 6.85 56.52 0.39 -6.43 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.43 6.40 56.52 0.36 -6.06 16 13 N -0.46 -9.57 6.12 -238.03 -1.46 -11.03 16 14 C 0.02 0.42 6.34 -7.57 -0.05 0.37 16 15 C -0.12 -1.76 3.36 -90.09 -0.30 -2.06 16 16 C -0.06 -0.74 0.71 -154.51 -0.11 -0.85 16 17 C -0.15 -2.00 7.39 37.16 0.27 -1.72 16 18 C -0.14 -1.56 8.47 37.16 0.31 -1.25 16 19 C -0.14 -1.51 8.33 37.16 0.31 -1.20 16 20 C 0.00 -0.02 4.00 -7.56 -0.03 -0.05 16 21 H 0.07 1.12 4.60 -51.93 -0.24 0.89 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 25 H 0.05 1.16 3.91 -51.93 -0.20 0.95 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.07 1.43 5.36 -51.93 -0.28 1.15 16 28 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.84 6.05 -51.93 -0.31 0.53 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.62 7.62 -51.93 -0.40 0.22 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.14 6.73 -51.92 -0.35 0.79 16 40 H 0.06 1.08 5.22 -51.93 -0.27 0.80 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -29.73 290.95 -7.33 -37.06 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.98 Total: -0.10 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 0.14 Total: -21.27 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.68 Total: -37.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.19 Total: 17.87 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.73 -7.33 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds