Wall clock time and date at job start Mon Mar 30 2020 02:39:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52995 * 109.47333 * 2 1
4 4 H 1.09006 * 109.47335 * 55.00020 * 3 2 1
5 5 C 1.50696 * 109.47268 * 174.99809 * 3 2 1
6 6 H 1.08002 * 119.99886 * 115.12855 * 5 3 2
7 7 C 1.37876 * 120.00330 * 295.12416 * 5 3 2
8 8 N 1.31513 * 120.00367 * 179.97438 * 7 5 3
9 9 Si 1.86804 * 119.99947 * 0.02562 * 7 5 3
10 10 H 1.48494 * 109.47396 * 89.99442 * 9 7 5
11 11 H 1.48494 * 109.47178 * 210.00105 * 9 7 5
12 12 H 1.48504 * 109.46518 * 329.99668 * 9 7 5
13 13 N 1.46899 * 109.47470 * 295.00170 * 3 2 1
14 14 C 1.47472 * 111.00414 * 173.25721 * 13 3 2
15 15 C 1.53507 * 87.93390 * 221.29492 * 14 13 3
16 16 C 1.53004 * 114.16910 * 139.67111 * 15 14 13
17 17 C 1.52997 * 109.47143 * 321.66237 * 16 15 14
18 18 C 1.52999 * 109.47186 * 81.66606 * 16 15 14
19 19 C 1.53004 * 109.47132 * 201.66461 * 16 15 14
20 20 C 1.47479 * 110.99929 * 77.28609 * 13 3 2
21 21 H 1.09003 * 109.47192 * 59.99990 * 1 2 3
22 22 H 1.08996 * 109.47608 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.47419 * 300.00144 * 1 2 3
24 24 H 1.08996 * 109.46951 * 240.00036 * 2 1 3
25 25 H 1.09003 * 109.47192 * 120.00009 * 2 1 3
26 26 H 0.96996 * 120.00552 * 180.02562 * 8 7 5
27 27 H 1.09004 * 113.47943 * 336.06329 * 14 13 3
28 28 H 1.09008 * 113.47878 * 106.52883 * 14 13 3
29 29 H 1.08997 * 114.17405 * 272.37662 * 15 14 13
30 30 H 1.09000 * 109.47132 * 66.74201 * 17 16 15
31 31 H 1.09004 * 109.46988 * 186.73611 * 17 16 15
32 32 H 1.08995 * 109.47635 * 306.73783 * 17 16 15
33 33 H 1.08998 * 109.47313 * 59.99609 * 18 16 15
34 34 H 1.09004 * 109.47346 * 180.02562 * 18 16 15
35 35 H 1.09002 * 109.47281 * 299.99725 * 18 16 15
36 36 H 1.08997 * 109.46937 * 59.99569 * 19 16 15
37 37 H 1.09004 * 109.47004 * 180.02562 * 19 16 15
38 38 H 1.08998 * 109.46821 * 300.00056 * 19 16 15
39 39 H 1.09008 * 113.47383 * 253.47194 * 20 13 3
40 40 H 1.08998 * 113.47976 * 23.88077 * 20 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 0.8418
5 6 3.5419 1.4442 0.1239
6 1 4.1501 1.8173 -0.6869
7 6 4.1395 0.9697 1.2722
8 7 5.4502 0.9708 1.3801
9 14 3.0875 0.3239 2.6743
10 1 2.8565 -1.1314 2.4902
11 1 3.7858 0.5551 3.9642
12 1 1.7837 1.0349 2.6829
13 7 1.6514 2.0993 -1.2552
14 6 1.9848 3.5355 -1.2254
15 6 0.6334 3.8064 -1.9014
16 6 -0.1020 5.0347 -1.3615
17 6 0.0928 5.1207 0.1536
18 6 0.4599 6.2960 -2.0205
19 6 -1.5942 4.9156 -1.6779
20 6 0.2285 2.4863 -1.2307
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 5.8707 0.6367 2.1878
27 1 2.0557 3.9441 -0.2173
28 1 2.8414 3.7955 -1.8475
29 1 0.6624 3.7634 -2.9901
30 1 1.1404 5.3254 0.3742
31 1 -0.5263 5.9233 0.5545
32 1 -0.1970 4.1750 0.6115
33 1 0.3212 6.2347 -3.0998
34 1 -0.0637 7.1712 -1.6356
35 1 1.5230 6.3810 -1.7951
36 1 -1.9945 4.0170 -1.2085
37 1 -2.1181 5.7909 -1.2937
38 1 -1.7330 4.8543 -2.7573
39 1 -0.4035 1.8569 -1.8573
40 1 -0.1696 2.6138 -0.2240
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000086681457.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:39:04
Heat of formation + Delta-G solvation = 25.721642 kcal
Electronic energy + Delta-G solvation = -16925.322019 eV
Core-core repulsion = 14548.012760 eV
Total energy + Delta-G solvation = -2377.309260 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.25569 -36.20174 -33.53531 -31.89314 -28.66679 -27.35971 -27.18155 -25.77532
-24.61597 -22.68938 -20.64776 -19.45901 -17.70879 -16.81240 -15.61816 -15.37237
-14.55672 -14.12873 -13.91873 -13.33353 -13.05657 -12.84395 -12.41790 -12.30636
-12.17451 -11.92832 -11.79166 -11.76336 -11.44205 -11.31081 -10.93600 -10.75420
-10.70760 -10.44736 -10.16852 -9.86401 -9.75983 -9.58970 -9.16293 -8.97869
-8.53881 -7.81900 -6.07056 -4.05556 3.25880 3.35510 3.36711 4.39414
4.75330 4.78953 4.96744 5.19679 5.23263 5.37836 5.52390 5.67902
5.74335 5.80562 5.86554 5.88362 5.91648 5.97121 6.02263 6.04740
6.15774 6.19149 6.24734 6.26466 6.37327 6.44581 6.49301 6.51037
6.60793 6.67010 6.71752 6.87711 6.89016 7.14799 7.45373 7.80655
8.02495 8.63244 9.01242 9.55363 11.06016
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.032242 B = 0.008803 C = 0.008063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.224177 B = 3180.074068 C = 3471.690628
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.119 4.119
3 C 0.155 3.845
4 H 0.006 0.994
5 C -0.504 4.504
6 H 0.079 0.921
7 C 0.071 3.929
8 N -0.899 5.899
9 Si 0.878 3.122
10 H -0.277 1.277
11 H -0.295 1.295
12 H -0.266 1.266
13 N -0.457 5.457
14 C 0.022 3.978
15 C -0.117 4.117
16 C -0.058 4.058
17 C -0.149 4.149
18 C -0.137 4.137
19 C -0.137 4.137
20 C -0.001 4.001
21 H 0.066 0.934
22 H 0.038 0.962
23 H 0.040 0.960
24 H 0.065 0.935
25 H 0.049 0.951
26 H 0.263 0.737
27 H 0.072 0.928
28 H 0.070 0.930
29 H 0.092 0.908
30 H 0.062 0.938
31 H 0.049 0.951
32 H 0.057 0.943
33 H 0.052 0.948
34 H 0.049 0.951
35 H 0.057 0.943
36 H 0.054 0.946
37 H 0.049 0.951
38 H 0.052 0.948
39 H 0.072 0.928
40 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.926 7.019 -3.923 15.223
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.157 4.157
3 C 0.047 3.953
4 H 0.023 0.977
5 C -0.542 4.542
6 H 0.097 0.903
7 C -0.131 4.131
8 N -0.538 5.538
9 Si 0.708 3.292
10 H -0.203 1.203
11 H -0.222 1.222
12 H -0.191 1.191
13 N -0.179 5.179
14 C -0.107 4.107
15 C -0.135 4.135
16 C -0.059 4.059
17 C -0.205 4.205
18 C -0.195 4.195
19 C -0.194 4.194
20 C -0.130 4.130
21 H 0.085 0.915
22 H 0.058 0.942
23 H 0.059 0.941
24 H 0.084 0.916
25 H 0.067 0.933
26 H 0.073 0.927
27 H 0.090 0.910
28 H 0.089 0.911
29 H 0.110 0.890
30 H 0.081 0.919
31 H 0.068 0.932
32 H 0.076 0.924
33 H 0.071 0.929
34 H 0.068 0.932
35 H 0.076 0.924
36 H 0.073 0.927
37 H 0.068 0.932
38 H 0.071 0.929
39 H 0.090 0.910
40 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -12.476 6.494 -4.296 14.707
hybrid contribution -0.641 -0.136 1.662 1.787
sum -13.118 6.358 -2.634 14.814
Atomic orbital electron populations
1.22220 0.98394 1.00274 1.01484 1.21821 0.92991 0.99622 1.01230
1.20257 0.97059 0.91037 0.86995 0.97684 1.20929 0.88780 1.41756
1.02771 0.90264 1.24923 0.94738 0.95393 0.98010 1.69885 1.08682
1.47126 1.28065 0.86954 0.80853 0.79628 0.81798 1.20338 1.22179
1.19125 1.68809 1.03622 1.10490 1.34962 1.23625 0.96073 0.90851
1.00132 1.22940 0.97236 0.93463 0.99896 1.20414 0.95047 0.94999
0.95431 1.22064 1.02025 1.01498 0.94962 1.21815 1.01098 0.96477
1.00062 1.21811 0.95175 1.01269 1.01152 1.23996 0.94667 0.94863
0.99485 0.91542 0.94242 0.94120 0.91615 0.93306 0.92663 0.90984
0.91112 0.88987 0.91898 0.93204 0.92418 0.92926 0.93216 0.92419
0.92692 0.93210 0.92901 0.90992 0.91882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.04 8.84 37.16 0.33 -2.71 16
2 C -0.12 -2.66 5.18 -26.74 -0.14 -2.80 16
3 C 0.15 3.70 0.92 -68.87 -0.06 3.64 16
4 H 0.01 0.14 6.27 -51.93 -0.33 -0.19 16
5 C -0.50 -14.31 8.69 -34.44 -0.30 -14.61 16
6 H 0.08 2.48 8.02 -52.49 -0.42 2.06 16
7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16
8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16
9 Si 0.88 22.06 24.65 -169.99 -4.19 17.87 16
10 H -0.28 -6.82 6.85 56.52 0.39 -6.43 16
11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
12 H -0.27 -6.43 6.40 56.52 0.36 -6.06 16
13 N -0.46 -9.57 6.12 -238.03 -1.46 -11.03 16
14 C 0.02 0.42 6.34 -7.57 -0.05 0.37 16
15 C -0.12 -1.76 3.36 -90.09 -0.30 -2.06 16
16 C -0.06 -0.74 0.71 -154.51 -0.11 -0.85 16
17 C -0.15 -2.00 7.39 37.16 0.27 -1.72 16
18 C -0.14 -1.56 8.47 37.16 0.31 -1.25 16
19 C -0.14 -1.51 8.33 37.16 0.31 -1.20 16
20 C 0.00 -0.02 4.00 -7.56 -0.03 -0.05 16
21 H 0.07 1.12 4.60 -51.93 -0.24 0.89 16
22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
24 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16
25 H 0.05 1.16 3.91 -51.93 -0.20 0.95 16
26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
27 H 0.07 1.43 5.36 -51.93 -0.28 1.15 16
28 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16
29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
30 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16
31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.84 6.05 -51.93 -0.31 0.53 16
33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.05 0.62 7.62 -51.93 -0.40 0.22 16
37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.07 1.14 6.73 -51.92 -0.35 0.79 16
40 H 0.06 1.08 5.22 -51.93 -0.27 0.80 16
LS Contribution 290.95 15.07 4.38 4.38
Total: -1.00 -29.73 290.95 -7.33 -37.06
By element:
Atomic # 1 Polarization: 6.87 SS G_CDS: -6.98 Total: -0.10 kcal
Atomic # 6 Polarization: -21.41 SS G_CDS: 0.14 Total: -21.27 kcal
Atomic # 7 Polarization: -37.25 SS G_CDS: -0.68 Total: -37.94 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -4.19 Total: 17.87 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -29.73 -7.33 -37.06 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000086681457.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal
(2) G-P(sol) polarization free energy of solvation -29.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds