Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47333 * 2 1 4 4 H 1.09006 * 109.47335 * 55.00020 * 3 2 1 5 5 C 1.50696 * 109.47268 * 174.99809 * 3 2 1 6 6 H 1.08002 * 119.99886 * 115.12855 * 5 3 2 7 7 C 1.37876 * 120.00330 * 295.12416 * 5 3 2 8 8 N 1.31513 * 120.00367 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99947 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47396 * 89.99442 * 9 7 5 11 11 H 1.48494 * 109.47178 * 210.00105 * 9 7 5 12 12 H 1.48504 * 109.46518 * 329.99668 * 9 7 5 13 13 N 1.46899 * 109.47470 * 295.00170 * 3 2 1 14 14 C 1.47472 * 111.00414 * 173.25721 * 13 3 2 15 15 C 1.53507 * 87.93390 * 221.29492 * 14 13 3 16 16 C 1.53004 * 114.16910 * 139.67111 * 15 14 13 17 17 C 1.52997 * 109.47143 * 321.66237 * 16 15 14 18 18 C 1.52999 * 109.47186 * 81.66606 * 16 15 14 19 19 C 1.53004 * 109.47132 * 201.66461 * 16 15 14 20 20 C 1.47479 * 110.99929 * 77.28609 * 13 3 2 21 21 H 1.09003 * 109.47192 * 59.99990 * 1 2 3 22 22 H 1.08996 * 109.47608 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47419 * 300.00144 * 1 2 3 24 24 H 1.08996 * 109.46951 * 240.00036 * 2 1 3 25 25 H 1.09003 * 109.47192 * 120.00009 * 2 1 3 26 26 H 0.96996 * 120.00552 * 180.02562 * 8 7 5 27 27 H 1.09004 * 113.47943 * 336.06329 * 14 13 3 28 28 H 1.09008 * 113.47878 * 106.52883 * 14 13 3 29 29 H 1.08997 * 114.17405 * 272.37662 * 15 14 13 30 30 H 1.09000 * 109.47132 * 66.74201 * 17 16 15 31 31 H 1.09004 * 109.46988 * 186.73611 * 17 16 15 32 32 H 1.08995 * 109.47635 * 306.73783 * 17 16 15 33 33 H 1.08998 * 109.47313 * 59.99609 * 18 16 15 34 34 H 1.09004 * 109.47346 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.47281 * 299.99725 * 18 16 15 36 36 H 1.08997 * 109.46937 * 59.99569 * 19 16 15 37 37 H 1.09004 * 109.47004 * 180.02562 * 19 16 15 38 38 H 1.08998 * 109.46821 * 300.00056 * 19 16 15 39 39 H 1.09008 * 113.47383 * 253.47194 * 20 13 3 40 40 H 1.08998 * 113.47976 * 23.88077 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1501 1.8173 -0.6869 7 6 4.1395 0.9697 1.2722 8 7 5.4502 0.9708 1.3801 9 14 3.0875 0.3239 2.6743 10 1 2.8565 -1.1314 2.4902 11 1 3.7858 0.5551 3.9642 12 1 1.7837 1.0349 2.6829 13 7 1.6514 2.0993 -1.2552 14 6 1.9848 3.5355 -1.2254 15 6 0.6334 3.8064 -1.9014 16 6 -0.1020 5.0347 -1.3615 17 6 0.0928 5.1207 0.1536 18 6 0.4599 6.2960 -2.0205 19 6 -1.5942 4.9156 -1.6779 20 6 0.2285 2.4863 -1.2307 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8707 0.6367 2.1878 27 1 2.0557 3.9441 -0.2173 28 1 2.8414 3.7955 -1.8475 29 1 0.6624 3.7634 -2.9901 30 1 1.1404 5.3254 0.3742 31 1 -0.5263 5.9233 0.5545 32 1 -0.1970 4.1750 0.6115 33 1 0.3212 6.2347 -3.0998 34 1 -0.0637 7.1712 -1.6356 35 1 1.5230 6.3810 -1.7951 36 1 -1.9945 4.0170 -1.2085 37 1 -2.1181 5.7909 -1.2937 38 1 -1.7330 4.8543 -2.7573 39 1 -0.4035 1.8569 -1.8573 40 1 -0.1696 2.6138 -0.2240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = 5.166356 kcal Electronic energy + Delta-G solvation = -16926.213363 eV Core-core repulsion = 14548.012760 eV Total energy + Delta-G solvation = -2378.200604 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68709 -37.55785 -35.24292 -33.89110 -30.38131 -28.32911 -28.18691 -27.43561 -26.07214 -24.46593 -22.10162 -21.11576 -19.14532 -18.71121 -17.31258 -16.75369 -16.28297 -15.48828 -15.16521 -14.82199 -14.65924 -14.45711 -13.88664 -13.68691 -13.59779 -13.53087 -13.01642 -12.87780 -12.85303 -12.60790 -12.34299 -12.33446 -12.11619 -11.79784 -11.67531 -11.55299 -11.32147 -11.10030 -10.86855 -10.84807 -10.53097 -9.46901 -8.33161 -6.36353 1.25667 1.28784 1.39318 2.27102 3.00351 3.35785 3.54130 3.84423 4.06619 4.23653 4.25726 4.34842 4.37285 4.47989 4.56383 4.68713 4.74304 4.77219 4.83413 4.87835 4.88966 4.94495 5.01702 5.05955 5.11787 5.13365 5.14547 5.23874 5.28446 5.33066 5.38607 5.43282 5.58954 5.62096 5.71783 5.80521 6.11260 6.63141 6.69913 7.28892 8.83890 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.008803 C = 0.008063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.224177 B = 3180.074068 C = 3471.690628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C 0.163 3.837 4 H -0.001 1.001 5 C -0.508 4.508 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.248 1.248 13 N -0.481 5.481 14 C 0.013 3.987 15 C -0.092 4.092 16 C -0.055 4.055 17 C -0.148 4.148 18 C -0.136 4.136 19 C -0.133 4.133 20 C 0.005 3.995 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.035 0.965 26 H 0.266 0.734 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.433 7.291 -3.904 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C 0.054 3.946 4 H 0.017 0.983 5 C -0.547 4.547 6 H 0.049 0.951 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.171 1.171 13 N -0.203 5.203 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.205 4.205 18 C -0.193 4.193 19 C -0.190 4.190 20 C -0.124 4.124 21 H 0.098 0.902 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.006 6.773 -4.297 17.903 hybrid contribution 0.545 -0.157 1.557 1.657 sum -15.461 6.616 -2.740 17.039 Atomic orbital electron populations 1.22136 0.94597 1.02224 1.02526 1.21744 0.96389 0.97713 1.00019 1.20049 0.93727 0.92563 0.88245 0.98346 1.21181 0.91369 1.40776 1.01338 0.95090 1.25784 0.95896 0.95778 1.00945 1.70041 1.10783 1.48874 1.29164 0.85907 0.79681 0.79622 0.77969 1.19079 1.21993 1.17142 1.68761 1.06846 1.11431 1.33254 1.23650 0.97980 0.90192 0.99756 1.22848 0.94038 0.94135 1.00043 1.20418 0.96315 0.94124 0.94729 1.22058 1.01156 1.01600 0.95733 1.21803 1.00306 0.96463 1.00740 1.21778 0.93228 1.02019 1.01979 1.24026 0.92262 0.95824 1.00270 0.90153 0.91909 0.93421 0.92821 0.94617 0.92517 0.92262 0.93082 0.88019 0.93878 0.91101 0.93591 0.91844 0.91529 0.93922 0.92770 0.91661 0.91850 0.89059 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 8.84 71.98 0.64 -4.58 16 2 C -0.12 -5.25 5.18 30.59 0.16 -5.09 16 3 C 0.16 7.80 0.92 44.17 0.04 7.84 16 4 H 0.00 -0.05 6.27 -2.38 -0.01 -0.06 16 5 C -0.51 -30.05 8.69 25.60 0.22 -29.83 16 6 H 0.03 2.07 8.02 -2.91 -0.02 2.04 16 7 C 0.01 0.79 5.45 84.65 0.46 1.25 16 8 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 9 Si 0.94 45.76 24.65 68.60 1.69 47.45 16 10 H -0.26 -12.31 6.85 99.48 0.68 -11.63 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.25 -11.17 6.40 99.48 0.64 -10.53 16 13 N -0.48 -20.12 6.12 -907.00 -5.55 -25.67 16 14 C 0.01 0.52 6.34 83.57 0.53 1.05 16 15 C -0.09 -2.61 3.36 -10.45 -0.04 -2.65 16 16 C -0.06 -1.26 0.71 -52.18 -0.04 -1.29 16 17 C -0.15 -3.73 7.39 71.98 0.53 -3.20 16 18 C -0.14 -2.77 8.47 71.98 0.61 -2.16 16 19 C -0.13 -2.39 8.33 71.98 0.60 -1.79 16 20 C 0.00 0.14 4.00 83.57 0.33 0.48 16 21 H 0.08 2.41 4.60 -2.39 -0.01 2.40 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.04 1.63 3.91 -2.39 -0.01 1.62 16 26 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 27 H 0.06 2.43 5.36 -2.39 -0.01 2.42 16 28 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.04 1.23 6.55 -2.39 -0.02 1.22 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.25 6.05 -2.39 -0.01 1.24 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.00 7.62 -2.39 -0.02 0.98 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 2.54 6.73 -2.38 -0.02 2.53 16 40 H 0.07 2.09 5.22 -2.39 -0.01 2.08 16 Total: -1.00 -66.71 290.95 1.39 -65.32 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.89 Total: 13.24 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 4.05 Total: -39.97 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -5.25 Total: -86.05 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.69 Total: 47.45 kcal Total: -66.71 1.39 -65.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.489 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds