Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.53252 * 2 1 4 4 C 1.53120 * 109.50107 * 239.89997 * 2 1 3 5 5 C 1.53123 * 109.21163 * 182.43700 * 4 2 1 6 6 H 1.09001 * 109.49925 * 297.68290 * 5 4 2 7 7 C 1.52994 * 109.50271 * 177.60452 * 5 4 2 8 8 C 1.53039 * 109.27546 * 57.62218 * 5 4 2 9 9 H 1.09004 * 109.45969 * 180.80356 * 8 5 4 10 10 C 1.52997 * 109.46343 * 60.83919 * 8 5 4 11 11 N 1.46842 * 109.52666 * 300.81951 * 8 5 4 12 12 C 1.46892 * 111.00192 * 185.84212 * 11 8 5 13 13 C 1.53003 * 109.47265 * 189.99769 * 12 11 8 14 14 C 1.50700 * 109.47431 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99620 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00480 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99514 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00532 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47116 * 89.99579 * 18 16 14 20 20 H 1.48496 * 109.47239 * 210.00179 * 18 16 14 21 21 H 1.48507 * 109.46834 * 329.99751 * 18 16 14 22 22 C 1.46848 * 111.19688 * 61.74516 * 11 8 5 23 23 H 1.09002 * 109.46755 * 180.09900 * 1 2 3 24 24 H 1.08999 * 109.46703 * 300.10109 * 1 2 3 25 25 H 1.08994 * 109.46796 * 60.10015 * 1 2 3 26 26 H 1.09002 * 109.52427 * 62.49974 * 4 2 1 27 27 H 1.08995 * 109.52208 * 302.37293 * 4 2 1 28 28 H 1.08996 * 109.47307 * 59.99726 * 7 5 4 29 29 H 1.09005 * 109.47004 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.47169 * 299.99740 * 7 5 4 31 31 H 1.09000 * 109.47024 * 59.99956 * 10 8 5 32 32 H 1.09003 * 109.46943 * 179.97438 * 10 8 5 33 33 H 1.08999 * 109.46928 * 299.99686 * 10 8 5 34 34 H 1.08997 * 109.47524 * 309.99772 * 12 11 8 35 35 H 1.09003 * 109.47304 * 70.00123 * 12 11 8 36 36 H 1.08994 * 109.47561 * 300.00227 * 13 12 11 37 37 H 1.09000 * 109.46875 * 60.00462 * 13 12 11 38 38 H 0.97003 * 119.99950 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.46555 * 58.27446 * 22 11 8 40 40 H 1.08998 * 109.46337 * 178.25654 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5712 -0.7734 -1.2116 6 1 3.9687 0.2414 -1.2312 7 6 4.0868 -1.5476 -2.4263 8 6 4.0230 -1.4744 0.0716 9 1 5.1121 -1.4987 0.1080 10 6 3.4806 -2.9049 0.0891 11 7 3.5107 -0.7427 1.2371 12 6 4.0388 -1.3064 2.4865 13 6 3.2998 -0.6907 3.6764 14 6 3.8411 -1.2695 4.9581 15 1 4.6334 -2.0029 4.9272 16 6 3.3251 -0.8630 6.1703 17 7 2.3607 0.0304 6.2079 18 14 3.9966 -1.5799 7.7591 19 1 5.1256 -0.7443 8.2410 20 1 2.9233 -1.6011 8.7851 21 1 4.4747 -2.9644 7.5143 22 6 2.0424 -0.7227 1.2481 23 1 -0.3633 -1.0277 0.0018 24 1 -0.3633 0.5154 0.8891 25 1 -0.3633 0.5123 -0.8908 26 1 1.7157 -0.1871 -2.1398 27 1 1.6443 -1.7388 -1.2695 28 1 3.7618 -1.0492 -3.3395 29 1 5.1760 -1.5829 -2.3991 30 1 3.6902 -2.5626 -2.4054 31 1 3.8617 -3.4485 -0.7755 32 1 3.8027 -3.4045 1.0028 33 1 2.3915 -2.8810 0.0522 34 1 3.8932 -2.3866 2.4879 35 1 5.1028 -1.0831 2.5647 36 1 3.4453 0.3894 3.6751 37 1 2.2358 -0.9141 3.5982 38 1 1.9978 0.3168 7.0607 39 1 1.6652 -1.7453 1.2550 40 1 1.6929 -0.2006 2.1388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166707792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = -22.795534 kcal Electronic energy + Delta-G solvation = -16552.323768 eV Core-core repulsion = 14172.910646 eV Total energy + Delta-G solvation = -2379.413122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.67661 -34.84555 -33.71341 -32.67605 -29.69151 -28.05172 -26.52205 -25.67940 -24.56842 -22.44750 -20.62081 -19.61624 -18.11666 -16.53768 -15.44678 -15.18346 -14.53515 -14.36126 -14.20485 -13.67642 -12.95399 -12.74072 -12.64503 -12.45278 -12.17363 -11.94657 -11.84801 -11.60695 -11.21577 -11.14083 -10.99750 -10.86243 -10.51144 -10.42113 -10.21336 -10.02171 -9.81580 -9.70908 -9.21100 -9.02378 -8.31610 -7.51952 -5.98282 -4.00274 3.33175 3.39190 3.42407 4.41205 4.56841 4.85446 5.06217 5.09416 5.26161 5.37812 5.51568 5.52791 5.59707 5.70984 5.73933 5.78377 5.92741 5.94697 6.01947 6.04831 6.08056 6.16338 6.20219 6.24014 6.39384 6.40902 6.47185 6.51677 6.64153 6.74830 6.83082 7.00904 7.60829 7.70978 7.89308 7.90731 8.09824 8.46437 9.06575 9.63260 11.13119 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038159 B = 0.006538 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.594076 B = 4281.470130 C = 4783.772374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.083 4.083 6 H 0.074 0.926 7 C -0.146 4.146 8 C 0.085 3.915 9 H 0.074 0.926 10 C -0.190 4.190 11 N -0.534 5.534 12 C 0.060 3.940 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.053 3.947 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.029 0.971 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 -2.375 -15.212 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.102 4.102 6 H 0.093 0.907 7 C -0.204 4.204 8 C -0.024 4.024 9 H 0.092 0.908 10 C -0.249 4.249 11 N -0.257 5.257 12 C -0.067 4.067 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.074 4.074 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.613 -1.794 -15.108 15.226 hybrid contribution 0.075 -1.236 1.056 1.627 sum -0.537 -3.029 -14.052 14.385 Atomic orbital electron populations 1.21776 0.95512 1.01450 1.01492 1.21186 0.94675 1.00340 0.94747 0.90728 1.21711 0.95122 1.00280 0.97477 1.21137 0.95581 0.99800 0.93706 0.90725 1.21867 1.00803 1.00322 0.97411 1.21617 0.99006 0.90828 0.90940 0.90815 1.22550 1.01973 0.98608 1.01738 1.62212 1.07786 1.53156 1.02518 1.22338 0.99367 0.96282 0.88699 1.19238 0.95328 0.96715 0.90315 1.21198 1.19640 1.23891 0.91179 0.92828 1.24987 0.95060 0.95138 0.99120 1.69970 1.26517 1.31208 1.25647 0.86602 0.78612 0.79502 0.83331 1.20635 1.21246 1.19953 1.22247 0.88163 0.98737 0.98281 0.93106 0.92347 0.93075 0.92627 0.92293 0.93006 0.92844 0.92617 0.92607 0.92342 0.92152 0.95819 0.92220 0.95811 0.96177 0.93029 0.95237 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 37.16 0.34 -1.51 16 2 C -0.09 -1.32 2.89 -90.53 -0.26 -1.58 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.11 -1.37 4.26 -26.61 -0.11 -1.49 16 5 C -0.08 -1.08 2.66 -90.54 -0.24 -1.32 16 6 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 7 C -0.15 -1.55 8.83 37.15 0.33 -1.22 16 8 C 0.09 1.31 2.47 -67.73 -0.17 1.14 16 9 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 10 C -0.19 -2.74 7.83 37.16 0.29 -2.45 16 11 N -0.53 -9.96 4.75 -226.69 -1.08 -11.04 16 12 C 0.06 1.30 5.09 -3.83 -0.02 1.28 16 13 C 0.02 0.56 4.22 -27.88 -0.12 0.44 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.05 0.96 3.84 -3.83 -0.01 0.94 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.57 6.41 -51.93 -0.33 0.24 16 31 H 0.05 0.68 6.41 -51.93 -0.33 0.35 16 32 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 33 H 0.06 0.88 4.80 -51.93 -0.25 0.64 16 34 H 0.02 0.51 6.07 -51.93 -0.32 0.20 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.03 0.53 6.19 -51.93 -0.32 0.21 16 40 H 0.09 1.88 5.81 -51.93 -0.30 1.58 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -29.36 295.16 -8.34 -37.69 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.04 Total: -2.23 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.38 Total: -19.41 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.34 Total: -37.33 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.36 -8.34 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166707792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.898 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds