Wall clock time and date at job start Mon Mar 30 2020 03:43:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.09000 * 109.53252 * 2 1
4 4 C 1.53120 * 109.50107 * 239.89997 * 2 1 3
5 5 C 1.53123 * 109.21163 * 182.43700 * 4 2 1
6 6 H 1.09001 * 109.49925 * 297.68290 * 5 4 2
7 7 C 1.52994 * 109.50271 * 177.60452 * 5 4 2
8 8 C 1.53039 * 109.27546 * 57.62218 * 5 4 2
9 9 H 1.09004 * 109.45969 * 180.80356 * 8 5 4
10 10 C 1.52997 * 109.46343 * 60.83919 * 8 5 4
11 11 N 1.46842 * 109.52666 * 300.81951 * 8 5 4
12 12 C 1.46892 * 111.00192 * 185.84212 * 11 8 5
13 13 C 1.53003 * 109.47265 * 189.99769 * 12 11 8
14 14 C 1.50700 * 109.47431 * 179.97438 * 13 12 11
15 15 H 1.08000 * 119.99620 * 0.02562 * 14 13 12
16 16 C 1.37873 * 120.00480 * 180.02562 * 14 13 12
17 17 N 1.31519 * 119.99514 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 120.00532 * 180.02562 * 16 14 13
19 19 H 1.48496 * 109.47116 * 89.99579 * 18 16 14
20 20 H 1.48496 * 109.47239 * 210.00179 * 18 16 14
21 21 H 1.48507 * 109.46834 * 329.99751 * 18 16 14
22 22 C 1.46848 * 111.19688 * 61.74516 * 11 8 5
23 23 H 1.09002 * 109.46755 * 180.09900 * 1 2 3
24 24 H 1.08999 * 109.46703 * 300.10109 * 1 2 3
25 25 H 1.08994 * 109.46796 * 60.10015 * 1 2 3
26 26 H 1.09002 * 109.52427 * 62.49974 * 4 2 1
27 27 H 1.08995 * 109.52208 * 302.37293 * 4 2 1
28 28 H 1.08996 * 109.47307 * 59.99726 * 7 5 4
29 29 H 1.09005 * 109.47004 * 180.02562 * 7 5 4
30 30 H 1.08998 * 109.47169 * 299.99740 * 7 5 4
31 31 H 1.09000 * 109.47024 * 59.99956 * 10 8 5
32 32 H 1.09003 * 109.46943 * 179.97438 * 10 8 5
33 33 H 1.08999 * 109.46928 * 299.99686 * 10 8 5
34 34 H 1.08997 * 109.47524 * 309.99772 * 12 11 8
35 35 H 1.09003 * 109.47304 * 70.00123 * 12 11 8
36 36 H 1.08994 * 109.47561 * 300.00227 * 13 12 11
37 37 H 1.09000 * 109.46875 * 60.00462 * 13 12 11
38 38 H 0.97003 * 119.99950 * 180.02562 * 17 16 14
39 39 H 1.08999 * 109.46555 * 58.27446 * 22 11 8
40 40 H 1.08998 * 109.46337 * 178.25654 * 22 11 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8945 1.0273 0.0000
4 6 2.0412 -0.7239 -1.2487
5 6 3.5712 -0.7734 -1.2116
6 1 3.9687 0.2414 -1.2312
7 6 4.0868 -1.5476 -2.4263
8 6 4.0230 -1.4744 0.0716
9 1 5.1121 -1.4987 0.1080
10 6 3.4806 -2.9049 0.0891
11 7 3.5107 -0.7427 1.2371
12 6 4.0388 -1.3064 2.4865
13 6 3.2998 -0.6907 3.6764
14 6 3.8411 -1.2695 4.9581
15 1 4.6334 -2.0029 4.9272
16 6 3.3251 -0.8630 6.1703
17 7 2.3607 0.0304 6.2079
18 14 3.9966 -1.5799 7.7591
19 1 5.1256 -0.7443 8.2410
20 1 2.9233 -1.6011 8.7851
21 1 4.4747 -2.9644 7.5143
22 6 2.0424 -0.7227 1.2481
23 1 -0.3633 -1.0277 0.0018
24 1 -0.3633 0.5154 0.8891
25 1 -0.3633 0.5123 -0.8908
26 1 1.7157 -0.1871 -2.1398
27 1 1.6443 -1.7388 -1.2695
28 1 3.7618 -1.0492 -3.3395
29 1 5.1760 -1.5829 -2.3991
30 1 3.6902 -2.5626 -2.4054
31 1 3.8617 -3.4485 -0.7755
32 1 3.8027 -3.4045 1.0028
33 1 2.3915 -2.8810 0.0522
34 1 3.8932 -2.3866 2.4879
35 1 5.1028 -1.0831 2.5647
36 1 3.4453 0.3894 3.6751
37 1 2.2358 -0.9141 3.5982
38 1 1.9978 0.3168 7.0607
39 1 1.6652 -1.7453 1.2550
40 1 1.6929 -0.2006 2.1388
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000166707792.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:38
Heat of formation + Delta-G solvation = -22.795534 kcal
Electronic energy + Delta-G solvation = -16552.323768 eV
Core-core repulsion = 14172.910646 eV
Total energy + Delta-G solvation = -2379.413122 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.67661 -34.84555 -33.71341 -32.67605 -29.69151 -28.05172 -26.52205 -25.67940
-24.56842 -22.44750 -20.62081 -19.61624 -18.11666 -16.53768 -15.44678 -15.18346
-14.53515 -14.36126 -14.20485 -13.67642 -12.95399 -12.74072 -12.64503 -12.45278
-12.17363 -11.94657 -11.84801 -11.60695 -11.21577 -11.14083 -10.99750 -10.86243
-10.51144 -10.42113 -10.21336 -10.02171 -9.81580 -9.70908 -9.21100 -9.02378
-8.31610 -7.51952 -5.98282 -4.00274 3.33175 3.39190 3.42407 4.41205
4.56841 4.85446 5.06217 5.09416 5.26161 5.37812 5.51568 5.52791
5.59707 5.70984 5.73933 5.78377 5.92741 5.94697 6.01947 6.04831
6.08056 6.16338 6.20219 6.24014 6.39384 6.40902 6.47185 6.51677
6.64153 6.74830 6.83082 7.00904 7.60829 7.70978 7.89308 7.90731
8.09824 8.46437 9.06575 9.63260 11.13119
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.038159 B = 0.006538 C = 0.005852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.594076 B = 4281.470130 C = 4783.772374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.091 4.091
3 H 0.074 0.926
4 C -0.108 4.108
5 C -0.083 4.083
6 H 0.074 0.926
7 C -0.146 4.146
8 C 0.085 3.915
9 H 0.074 0.926
10 C -0.190 4.190
11 N -0.534 5.534
12 C 0.060 3.940
13 C 0.021 3.979
14 C -0.520 4.520
15 H 0.053 0.947
16 C 0.058 3.942
17 N -0.894 5.894
18 Si 0.892 3.108
19 H -0.280 1.280
20 H -0.287 1.287
21 H -0.275 1.275
22 C 0.053 3.947
23 H 0.050 0.950
24 H 0.057 0.943
25 H 0.050 0.950
26 H 0.055 0.945
27 H 0.058 0.942
28 H 0.051 0.949
29 H 0.052 0.948
30 H 0.055 0.945
31 H 0.055 0.945
32 H 0.058 0.942
33 H 0.060 0.940
34 H 0.024 0.976
35 H 0.059 0.941
36 H 0.024 0.976
37 H 0.020 0.980
38 H 0.260 0.740
39 H 0.029 0.971
40 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.670 -2.375 -15.212 15.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.109 4.109
3 H 0.093 0.907
4 C -0.146 4.146
5 C -0.102 4.102
6 H 0.093 0.907
7 C -0.204 4.204
8 C -0.024 4.024
9 H 0.092 0.908
10 C -0.249 4.249
11 N -0.257 5.257
12 C -0.067 4.067
13 C -0.016 4.016
14 C -0.559 4.559
15 H 0.072 0.928
16 C -0.143 4.143
17 N -0.533 5.533
18 Si 0.720 3.280
19 H -0.206 1.206
20 H -0.212 1.212
21 H -0.200 1.200
22 C -0.074 4.074
23 H 0.069 0.931
24 H 0.077 0.923
25 H 0.069 0.931
26 H 0.074 0.926
27 H 0.077 0.923
28 H 0.070 0.930
29 H 0.072 0.928
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.078 0.922
34 H 0.042 0.958
35 H 0.078 0.922
36 H 0.042 0.958
37 H 0.038 0.962
38 H 0.070 0.930
39 H 0.048 0.952
40 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -0.613 -1.794 -15.108 15.226
hybrid contribution 0.075 -1.236 1.056 1.627
sum -0.537 -3.029 -14.052 14.385
Atomic orbital electron populations
1.21776 0.95512 1.01450 1.01492 1.21186 0.94675 1.00340 0.94747
0.90728 1.21711 0.95122 1.00280 0.97477 1.21137 0.95581 0.99800
0.93706 0.90725 1.21867 1.00803 1.00322 0.97411 1.21617 0.99006
0.90828 0.90940 0.90815 1.22550 1.01973 0.98608 1.01738 1.62212
1.07786 1.53156 1.02518 1.22338 0.99367 0.96282 0.88699 1.19238
0.95328 0.96715 0.90315 1.21198 1.19640 1.23891 0.91179 0.92828
1.24987 0.95060 0.95138 0.99120 1.69970 1.26517 1.31208 1.25647
0.86602 0.78612 0.79502 0.83331 1.20635 1.21246 1.19953 1.22247
0.88163 0.98737 0.98281 0.93106 0.92347 0.93075 0.92627 0.92293
0.93006 0.92844 0.92617 0.92607 0.92342 0.92152 0.95819 0.92220
0.95811 0.96177 0.93029 0.95237 0.89122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 9.20 37.16 0.34 -1.51 16
2 C -0.09 -1.32 2.89 -90.53 -0.26 -1.58 16
3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
4 C -0.11 -1.37 4.26 -26.61 -0.11 -1.49 16
5 C -0.08 -1.08 2.66 -90.54 -0.24 -1.32 16
6 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
7 C -0.15 -1.55 8.83 37.15 0.33 -1.22 16
8 C 0.09 1.31 2.47 -67.73 -0.17 1.14 16
9 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16
10 C -0.19 -2.74 7.83 37.16 0.29 -2.45 16
11 N -0.53 -9.96 4.75 -226.69 -1.08 -11.04 16
12 C 0.06 1.30 5.09 -3.83 -0.02 1.28 16
13 C 0.02 0.56 4.22 -27.88 -0.12 0.44 16
14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16
15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16
18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16
19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
22 C 0.05 0.96 3.84 -3.83 -0.01 0.94 16
23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16
28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.05 0.57 6.41 -51.93 -0.33 0.24 16
31 H 0.05 0.68 6.41 -51.93 -0.33 0.35 16
32 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16
33 H 0.06 0.88 4.80 -51.93 -0.25 0.64 16
34 H 0.02 0.51 6.07 -51.93 -0.32 0.20 16
35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
36 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16
38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
39 H 0.03 0.53 6.19 -51.93 -0.32 0.21 16
40 H 0.09 1.88 5.81 -51.93 -0.30 1.58 16
LS Contribution 295.16 15.07 4.45 4.45
Total: -1.00 -29.36 295.16 -8.34 -37.69
By element:
Atomic # 1 Polarization: 4.80 SS G_CDS: -7.04 Total: -2.23 kcal
Atomic # 6 Polarization: -19.02 SS G_CDS: -0.38 Total: -19.41 kcal
Atomic # 7 Polarization: -36.99 SS G_CDS: -0.34 Total: -37.33 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -29.36 -8.34 -37.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000166707792.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.898 kcal
(2) G-P(sol) polarization free energy of solvation -29.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds