Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.53252 * 2 1 4 4 C 1.53120 * 109.50107 * 239.89997 * 2 1 3 5 5 C 1.53123 * 109.21163 * 182.43700 * 4 2 1 6 6 H 1.09001 * 109.49925 * 297.68290 * 5 4 2 7 7 C 1.52994 * 109.50271 * 177.60452 * 5 4 2 8 8 C 1.53039 * 109.27546 * 57.62218 * 5 4 2 9 9 H 1.09004 * 109.45969 * 180.80356 * 8 5 4 10 10 C 1.52997 * 109.46343 * 60.83919 * 8 5 4 11 11 N 1.46842 * 109.52666 * 300.81951 * 8 5 4 12 12 C 1.46892 * 111.00192 * 185.84212 * 11 8 5 13 13 C 1.53003 * 109.47265 * 189.99769 * 12 11 8 14 14 C 1.50700 * 109.47431 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99620 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00480 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99514 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00532 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47116 * 89.99579 * 18 16 14 20 20 H 1.48496 * 109.47239 * 210.00179 * 18 16 14 21 21 H 1.48507 * 109.46834 * 329.99751 * 18 16 14 22 22 C 1.46848 * 111.19688 * 61.74516 * 11 8 5 23 23 H 1.09002 * 109.46755 * 180.09900 * 1 2 3 24 24 H 1.08999 * 109.46703 * 300.10109 * 1 2 3 25 25 H 1.08994 * 109.46796 * 60.10015 * 1 2 3 26 26 H 1.09002 * 109.52427 * 62.49974 * 4 2 1 27 27 H 1.08995 * 109.52208 * 302.37293 * 4 2 1 28 28 H 1.08996 * 109.47307 * 59.99726 * 7 5 4 29 29 H 1.09005 * 109.47004 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.47169 * 299.99740 * 7 5 4 31 31 H 1.09000 * 109.47024 * 59.99956 * 10 8 5 32 32 H 1.09003 * 109.46943 * 179.97438 * 10 8 5 33 33 H 1.08999 * 109.46928 * 299.99686 * 10 8 5 34 34 H 1.08997 * 109.47524 * 309.99772 * 12 11 8 35 35 H 1.09003 * 109.47304 * 70.00123 * 12 11 8 36 36 H 1.08994 * 109.47561 * 300.00227 * 13 12 11 37 37 H 1.09000 * 109.46875 * 60.00462 * 13 12 11 38 38 H 0.97003 * 119.99950 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.46555 * 58.27446 * 22 11 8 40 40 H 1.08998 * 109.46337 * 178.25654 * 22 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5712 -0.7734 -1.2116 6 1 3.9687 0.2414 -1.2312 7 6 4.0868 -1.5476 -2.4263 8 6 4.0230 -1.4744 0.0716 9 1 5.1121 -1.4987 0.1080 10 6 3.4806 -2.9049 0.0891 11 7 3.5107 -0.7427 1.2371 12 6 4.0388 -1.3064 2.4865 13 6 3.2998 -0.6907 3.6764 14 6 3.8411 -1.2695 4.9581 15 1 4.6334 -2.0029 4.9272 16 6 3.3251 -0.8630 6.1703 17 7 2.3607 0.0304 6.2079 18 14 3.9966 -1.5799 7.7591 19 1 5.1256 -0.7443 8.2410 20 1 2.9233 -1.6011 8.7851 21 1 4.4747 -2.9644 7.5143 22 6 2.0424 -0.7227 1.2481 23 1 -0.3633 -1.0277 0.0018 24 1 -0.3633 0.5154 0.8891 25 1 -0.3633 0.5123 -0.8908 26 1 1.7157 -0.1871 -2.1398 27 1 1.6443 -1.7388 -1.2695 28 1 3.7618 -1.0492 -3.3395 29 1 5.1760 -1.5829 -2.3991 30 1 3.6902 -2.5626 -2.4054 31 1 3.8617 -3.4485 -0.7755 32 1 3.8027 -3.4045 1.0028 33 1 2.3915 -2.8810 0.0522 34 1 3.8932 -2.3866 2.4879 35 1 5.1028 -1.0831 2.5647 36 1 3.4453 0.3894 3.6751 37 1 2.2358 -0.9141 3.5982 38 1 1.9978 0.3168 7.0607 39 1 1.6652 -1.7453 1.2550 40 1 1.6929 -0.2006 2.1388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166707792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = -40.380137 kcal Electronic energy + Delta-G solvation = -16553.086293 eV Core-core repulsion = 14172.910646 eV Total energy + Delta-G solvation = -2380.175648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97914 -36.45370 -34.93082 -34.60865 -31.45230 -29.40722 -27.58998 -27.13512 -26.26142 -24.04189 -21.93297 -21.18447 -19.35396 -18.63347 -16.82051 -16.72394 -16.32490 -15.88624 -15.40387 -15.09100 -14.38789 -14.25045 -14.05547 -13.77916 -13.43772 -13.27075 -13.12567 -12.85051 -12.81230 -12.69488 -12.50592 -12.33519 -12.23173 -11.85721 -11.54233 -11.43479 -11.29817 -11.19645 -10.94995 -10.83971 -10.53420 -9.04409 -8.21535 -6.33088 1.38512 1.40393 1.51266 2.39041 3.09865 3.11721 3.75561 3.92477 3.97635 4.09461 4.35415 4.40638 4.46643 4.49064 4.59632 4.65548 4.67539 4.77135 4.83040 4.86958 4.89899 4.94448 5.00832 5.11157 5.12808 5.14321 5.23890 5.29612 5.35731 5.42640 5.47379 5.50955 5.62912 5.70831 5.79107 6.11918 6.37163 6.44010 6.83527 7.35970 8.90496 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038159 B = 0.006538 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.594076 B = 4281.470130 C = 4783.772374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.102 4.102 5 C -0.080 4.080 6 H 0.066 0.934 7 C -0.140 4.140 8 C 0.080 3.920 9 H 0.073 0.927 10 C -0.183 4.183 11 N -0.544 5.544 12 C 0.076 3.924 13 C 0.032 3.968 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.264 1.264 22 C 0.058 3.942 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.025 0.975 35 H 0.057 0.943 36 H -0.011 1.011 37 H -0.001 1.001 38 H 0.264 0.736 39 H 0.026 0.974 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -3.451 -16.753 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.140 4.140 5 C -0.099 4.099 6 H 0.085 0.915 7 C -0.197 4.197 8 C -0.028 4.028 9 H 0.091 0.909 10 C -0.241 4.241 11 N -0.267 5.267 12 C -0.052 4.052 13 C -0.005 4.005 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.070 4.070 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.007 0.993 37 H 0.018 0.982 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.164 -2.875 -16.672 16.919 hybrid contribution -0.076 -0.859 1.519 1.747 sum -0.240 -3.734 -15.152 15.608 Atomic orbital electron populations 1.21751 0.94056 1.01968 1.02063 1.21159 0.95887 0.99461 0.94051 0.91769 1.21690 0.94753 1.00577 0.96960 1.21125 0.95883 0.99500 0.93363 0.91543 1.21815 1.01105 1.00309 0.96511 1.21791 0.98996 0.91500 0.90529 0.90868 1.22477 1.01744 0.97896 1.02019 1.62176 1.08240 1.53895 1.02388 1.21986 0.98503 0.95889 0.88791 1.19038 0.94665 0.94660 0.92122 1.21622 1.20025 1.24303 0.92444 0.92370 1.25961 0.95166 0.95347 1.03114 1.70110 1.27748 1.32433 1.26835 0.85425 0.78087 0.79091 0.78308 1.19690 1.20576 1.18782 1.22156 0.87789 0.98408 0.98607 0.92595 0.93772 0.90530 0.90186 0.91692 0.91299 0.92374 0.91971 0.89790 0.94266 0.92417 0.95733 0.92472 0.99262 0.98238 0.92731 0.95589 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.20 71.98 0.66 -2.80 16 2 C -0.09 -2.48 2.89 -10.73 -0.03 -2.51 16 3 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.10 -2.33 4.26 30.68 0.13 -2.20 16 5 C -0.08 -1.89 2.66 -10.74 -0.03 -1.92 16 6 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 7 C -0.14 -2.44 8.83 71.98 0.64 -1.81 16 8 C 0.08 2.37 2.47 44.94 0.11 2.48 16 9 H 0.07 2.18 8.12 -2.38 -0.02 2.16 16 10 C -0.18 -4.99 7.83 71.98 0.56 -4.43 16 11 N -0.54 -20.75 4.75 -871.11 -4.14 -24.89 16 12 C 0.08 3.40 5.09 86.31 0.44 3.84 16 13 C 0.03 1.80 4.22 29.85 0.13 1.92 16 14 C -0.55 -32.11 9.11 25.60 0.23 -31.87 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 18 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.06 2.17 3.84 86.33 0.33 2.50 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.43 6.56 -2.39 -0.02 1.42 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 1.02 6.41 -2.39 -0.02 1.01 16 31 H 0.08 1.81 6.41 -2.39 -0.02 1.80 16 32 H 0.04 1.21 6.35 -2.39 -0.02 1.19 16 33 H 0.06 1.60 4.80 -2.39 -0.01 1.59 16 34 H 0.02 1.09 6.07 -2.39 -0.01 1.08 16 35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.00 -0.04 6.21 -2.39 -0.01 -0.05 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.03 0.97 6.19 -2.39 -0.01 0.95 16 40 H 0.05 2.23 5.81 -2.39 -0.01 2.21 16 Total: -1.00 -64.91 295.16 2.79 -62.12 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.98 Total: 9.45 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.64 Total: -36.21 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.86 Total: -82.49 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.91 2.79 -62.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166707792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.739 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds