Wall clock time and date at job start Mon Mar 30 2020 03:43:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.09000 * 109.53252 * 2 1
4 4 C 1.53120 * 109.50107 * 239.89997 * 2 1 3
5 5 C 1.53123 * 109.21163 * 182.43700 * 4 2 1
6 6 H 1.09001 * 109.49925 * 297.68290 * 5 4 2
7 7 C 1.52994 * 109.50271 * 177.60452 * 5 4 2
8 8 C 1.53039 * 109.27546 * 57.62218 * 5 4 2
9 9 H 1.09004 * 109.45969 * 180.80356 * 8 5 4
10 10 C 1.52997 * 109.46343 * 60.83919 * 8 5 4
11 11 N 1.46842 * 109.52666 * 300.81951 * 8 5 4
12 12 C 1.46892 * 111.00192 * 185.84212 * 11 8 5
13 13 C 1.53003 * 109.47265 * 189.99769 * 12 11 8
14 14 C 1.50700 * 109.47431 * 179.97438 * 13 12 11
15 15 H 1.08000 * 119.99620 * 0.02562 * 14 13 12
16 16 C 1.37873 * 120.00480 * 180.02562 * 14 13 12
17 17 N 1.31519 * 119.99514 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 120.00532 * 180.02562 * 16 14 13
19 19 H 1.48496 * 109.47116 * 89.99579 * 18 16 14
20 20 H 1.48496 * 109.47239 * 210.00179 * 18 16 14
21 21 H 1.48507 * 109.46834 * 329.99751 * 18 16 14
22 22 C 1.46848 * 111.19688 * 61.74516 * 11 8 5
23 23 H 1.09002 * 109.46755 * 180.09900 * 1 2 3
24 24 H 1.08999 * 109.46703 * 300.10109 * 1 2 3
25 25 H 1.08994 * 109.46796 * 60.10015 * 1 2 3
26 26 H 1.09002 * 109.52427 * 62.49974 * 4 2 1
27 27 H 1.08995 * 109.52208 * 302.37293 * 4 2 1
28 28 H 1.08996 * 109.47307 * 59.99726 * 7 5 4
29 29 H 1.09005 * 109.47004 * 180.02562 * 7 5 4
30 30 H 1.08998 * 109.47169 * 299.99740 * 7 5 4
31 31 H 1.09000 * 109.47024 * 59.99956 * 10 8 5
32 32 H 1.09003 * 109.46943 * 179.97438 * 10 8 5
33 33 H 1.08999 * 109.46928 * 299.99686 * 10 8 5
34 34 H 1.08997 * 109.47524 * 309.99772 * 12 11 8
35 35 H 1.09003 * 109.47304 * 70.00123 * 12 11 8
36 36 H 1.08994 * 109.47561 * 300.00227 * 13 12 11
37 37 H 1.09000 * 109.46875 * 60.00462 * 13 12 11
38 38 H 0.97003 * 119.99950 * 180.02562 * 17 16 14
39 39 H 1.08999 * 109.46555 * 58.27446 * 22 11 8
40 40 H 1.08998 * 109.46337 * 178.25654 * 22 11 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8945 1.0273 0.0000
4 6 2.0412 -0.7239 -1.2487
5 6 3.5712 -0.7734 -1.2116
6 1 3.9687 0.2414 -1.2312
7 6 4.0868 -1.5476 -2.4263
8 6 4.0230 -1.4744 0.0716
9 1 5.1121 -1.4987 0.1080
10 6 3.4806 -2.9049 0.0891
11 7 3.5107 -0.7427 1.2371
12 6 4.0388 -1.3064 2.4865
13 6 3.2998 -0.6907 3.6764
14 6 3.8411 -1.2695 4.9581
15 1 4.6334 -2.0029 4.9272
16 6 3.3251 -0.8630 6.1703
17 7 2.3607 0.0304 6.2079
18 14 3.9966 -1.5799 7.7591
19 1 5.1256 -0.7443 8.2410
20 1 2.9233 -1.6011 8.7851
21 1 4.4747 -2.9644 7.5143
22 6 2.0424 -0.7227 1.2481
23 1 -0.3633 -1.0277 0.0018
24 1 -0.3633 0.5154 0.8891
25 1 -0.3633 0.5123 -0.8908
26 1 1.7157 -0.1871 -2.1398
27 1 1.6443 -1.7388 -1.2695
28 1 3.7618 -1.0492 -3.3395
29 1 5.1760 -1.5829 -2.3991
30 1 3.6902 -2.5626 -2.4054
31 1 3.8617 -3.4485 -0.7755
32 1 3.8027 -3.4045 1.0028
33 1 2.3915 -2.8810 0.0522
34 1 3.8932 -2.3866 2.4879
35 1 5.1028 -1.0831 2.5647
36 1 3.4453 0.3894 3.6751
37 1 2.2358 -0.9141 3.5982
38 1 1.9978 0.3168 7.0607
39 1 1.6652 -1.7453 1.2550
40 1 1.6929 -0.2006 2.1388
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000166707792.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:38
Heat of formation + Delta-G solvation = -40.380137 kcal
Electronic energy + Delta-G solvation = -16553.086293 eV
Core-core repulsion = 14172.910646 eV
Total energy + Delta-G solvation = -2380.175648 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.97914 -36.45370 -34.93082 -34.60865 -31.45230 -29.40722 -27.58998 -27.13512
-26.26142 -24.04189 -21.93297 -21.18447 -19.35396 -18.63347 -16.82051 -16.72394
-16.32490 -15.88624 -15.40387 -15.09100 -14.38789 -14.25045 -14.05547 -13.77916
-13.43772 -13.27075 -13.12567 -12.85051 -12.81230 -12.69488 -12.50592 -12.33519
-12.23173 -11.85721 -11.54233 -11.43479 -11.29817 -11.19645 -10.94995 -10.83971
-10.53420 -9.04409 -8.21535 -6.33088 1.38512 1.40393 1.51266 2.39041
3.09865 3.11721 3.75561 3.92477 3.97635 4.09461 4.35415 4.40638
4.46643 4.49064 4.59632 4.65548 4.67539 4.77135 4.83040 4.86958
4.89899 4.94448 5.00832 5.11157 5.12808 5.14321 5.23890 5.29612
5.35731 5.42640 5.47379 5.50955 5.62912 5.70831 5.79107 6.11918
6.37163 6.44010 6.83527 7.35970 8.90496
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.038159 B = 0.006538 C = 0.005852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.594076 B = 4281.470130 C = 4783.772374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.087 4.087
3 H 0.064 0.936
4 C -0.102 4.102
5 C -0.080 4.080
6 H 0.066 0.934
7 C -0.140 4.140
8 C 0.080 3.920
9 H 0.073 0.927
10 C -0.183 4.183
11 N -0.544 5.544
12 C 0.076 3.924
13 C 0.032 3.968
14 C -0.546 4.546
15 H 0.058 0.942
16 C 0.002 3.998
17 N -0.931 5.931
18 Si 0.967 3.033
19 H -0.271 1.271
20 H -0.280 1.280
21 H -0.264 1.264
22 C 0.058 3.942
23 H 0.055 0.945
24 H 0.043 0.957
25 H 0.076 0.924
26 H 0.080 0.920
27 H 0.064 0.936
28 H 0.068 0.932
29 H 0.057 0.943
30 H 0.061 0.939
31 H 0.083 0.917
32 H 0.038 0.962
33 H 0.057 0.943
34 H 0.025 0.975
35 H 0.057 0.943
36 H -0.011 1.011
37 H -0.001 1.001
38 H 0.264 0.736
39 H 0.026 0.974
40 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.228 -3.451 -16.753 17.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.106 4.106
3 H 0.082 0.918
4 C -0.140 4.140
5 C -0.099 4.099
6 H 0.085 0.915
7 C -0.197 4.197
8 C -0.028 4.028
9 H 0.091 0.909
10 C -0.241 4.241
11 N -0.267 5.267
12 C -0.052 4.052
13 C -0.005 4.005
14 C -0.584 4.584
15 H 0.076 0.924
16 C -0.196 4.196
17 N -0.571 5.571
18 Si 0.791 3.209
19 H -0.197 1.197
20 H -0.206 1.206
21 H -0.188 1.188
22 C -0.070 4.070
23 H 0.074 0.926
24 H 0.062 0.938
25 H 0.095 0.905
26 H 0.098 0.902
27 H 0.083 0.917
28 H 0.087 0.913
29 H 0.076 0.924
30 H 0.080 0.920
31 H 0.102 0.898
32 H 0.057 0.943
33 H 0.076 0.924
34 H 0.043 0.957
35 H 0.075 0.925
36 H 0.007 0.993
37 H 0.018 0.982
38 H 0.073 0.927
39 H 0.044 0.956
40 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -0.164 -2.875 -16.672 16.919
hybrid contribution -0.076 -0.859 1.519 1.747
sum -0.240 -3.734 -15.152 15.608
Atomic orbital electron populations
1.21751 0.94056 1.01968 1.02063 1.21159 0.95887 0.99461 0.94051
0.91769 1.21690 0.94753 1.00577 0.96960 1.21125 0.95883 0.99500
0.93363 0.91543 1.21815 1.01105 1.00309 0.96511 1.21791 0.98996
0.91500 0.90529 0.90868 1.22477 1.01744 0.97896 1.02019 1.62176
1.08240 1.53895 1.02388 1.21986 0.98503 0.95889 0.88791 1.19038
0.94665 0.94660 0.92122 1.21622 1.20025 1.24303 0.92444 0.92370
1.25961 0.95166 0.95347 1.03114 1.70110 1.27748 1.32433 1.26835
0.85425 0.78087 0.79091 0.78308 1.19690 1.20576 1.18782 1.22156
0.87789 0.98408 0.98607 0.92595 0.93772 0.90530 0.90186 0.91692
0.91299 0.92374 0.91971 0.89790 0.94266 0.92417 0.95733 0.92472
0.99262 0.98238 0.92731 0.95589 0.93213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.46 9.20 71.98 0.66 -2.80 16
2 C -0.09 -2.48 2.89 -10.73 -0.03 -2.51 16
3 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
4 C -0.10 -2.33 4.26 30.68 0.13 -2.20 16
5 C -0.08 -1.89 2.66 -10.74 -0.03 -1.92 16
6 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
7 C -0.14 -2.44 8.83 71.98 0.64 -1.81 16
8 C 0.08 2.37 2.47 44.94 0.11 2.48 16
9 H 0.07 2.18 8.12 -2.38 -0.02 2.16 16
10 C -0.18 -4.99 7.83 71.98 0.56 -4.43 16
11 N -0.54 -20.75 4.75 -871.11 -4.14 -24.89 16
12 C 0.08 3.40 5.09 86.31 0.44 3.84 16
13 C 0.03 1.80 4.22 29.85 0.13 1.92 16
14 C -0.55 -32.11 9.11 25.60 0.23 -31.87 16
15 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16
16 C 0.00 0.12 5.46 84.65 0.46 0.58 16
17 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16
18 Si 0.97 45.11 29.54 68.60 2.03 47.14 16
19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16
22 C 0.06 2.17 3.84 86.33 0.33 2.50 16
23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
27 H 0.06 1.43 6.56 -2.39 -0.02 1.42 16
28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16
30 H 0.06 1.02 6.41 -2.39 -0.02 1.01 16
31 H 0.08 1.81 6.41 -2.39 -0.02 1.80 16
32 H 0.04 1.21 6.35 -2.39 -0.02 1.19 16
33 H 0.06 1.60 4.80 -2.39 -0.01 1.59 16
34 H 0.02 1.09 6.07 -2.39 -0.01 1.08 16
35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16
36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16
37 H 0.00 -0.04 6.21 -2.39 -0.01 -0.05 16
38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16
39 H 0.03 0.97 6.19 -2.39 -0.01 0.95 16
40 H 0.05 2.23 5.81 -2.39 -0.01 2.21 16
Total: -1.00 -64.91 295.16 2.79 -62.12
By element:
Atomic # 1 Polarization: 8.47 SS G_CDS: 0.98 Total: 9.45 kcal
Atomic # 6 Polarization: -39.85 SS G_CDS: 3.64 Total: -36.21 kcal
Atomic # 7 Polarization: -78.64 SS G_CDS: -3.86 Total: -82.49 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Total: -64.91 2.79 -62.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000166707792.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.739 kcal
(2) G-P(sol) polarization free energy of solvation -64.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds