Wall clock time and date at job start Mon Mar 30 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46886 * 2 1 4 4 C 1.50699 * 109.46716 * 240.01205 * 2 1 3 5 5 H 1.07999 * 120.00548 * 356.12554 * 4 2 1 6 6 C 1.37880 * 119.99950 * 176.13280 * 4 2 1 7 7 N 1.31519 * 119.99934 * 174.03163 * 6 4 2 8 8 Si 1.86800 * 120.00050 * 354.02881 * 6 4 2 9 9 H 1.48499 * 109.47042 * 84.85264 * 8 6 4 10 10 H 1.48500 * 109.47279 * 204.85281 * 8 6 4 11 11 H 1.48500 * 109.46911 * 324.85695 * 8 6 4 12 12 N 1.46893 * 109.47449 * 120.00859 * 2 1 3 13 13 C 1.46900 * 111.00116 * 58.95602 * 12 2 1 14 14 C 1.46902 * 110.99998 * 294.99401 * 12 2 1 15 15 H 1.09004 * 109.46541 * 60.00574 * 14 12 2 16 16 C 1.52991 * 109.47719 * 300.00444 * 14 12 2 17 17 C 1.52996 * 109.47732 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46985 * 59.99717 * 17 16 14 19 19 C 1.53001 * 109.47224 * 300.00285 * 18 17 16 20 20 H 1.09001 * 109.47468 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47313 * 300.00014 * 19 18 17 22 22 C 1.52999 * 109.47178 * 180.02562 * 14 12 2 23 23 H 1.08995 * 109.47370 * 55.13717 * 1 2 3 24 24 H 1.09001 * 109.46751 * 175.14202 * 1 2 3 25 25 H 1.09001 * 109.46756 * 295.13285 * 1 2 3 26 26 H 0.97003 * 119.99648 * 180.02562 * 7 6 4 27 27 H 1.08989 * 109.47219 * 59.99825 * 13 12 2 28 28 H 1.09003 * 109.46883 * 180.02562 * 13 12 2 29 29 H 1.09003 * 109.46631 * 299.99514 * 13 12 2 30 30 H 1.08999 * 109.47134 * 300.00187 * 16 14 12 31 31 H 1.09009 * 109.47077 * 59.99211 * 16 14 12 32 32 H 1.09004 * 109.46722 * 300.00249 * 17 16 14 33 33 H 1.08994 * 109.47251 * 180.02562 * 17 16 14 34 34 H 1.08995 * 109.47145 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.46982 * 59.99968 * 18 17 16 36 36 H 1.08997 * 109.47342 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.47180 * 300.00331 * 21 19 18 38 38 H 1.09009 * 109.47189 * 59.99816 * 21 19 18 39 39 H 1.09006 * 109.47213 * 300.00494 * 22 14 12 40 40 H 1.08998 * 109.46982 * 60.00071 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 -1.2306 5 1 1.3325 -1.1748 -1.9094 6 6 3.3853 -0.7668 -1.4900 7 7 3.8322 -1.4844 -2.4974 8 14 4.5835 0.1756 -0.4104 9 1 4.9197 -0.6395 0.7845 10 1 5.8217 0.4624 -1.1784 11 1 3.9615 1.4532 0.0210 12 7 2.0197 -0.6926 1.1992 13 6 1.5285 -2.0763 1.2456 14 6 1.6489 0.0389 2.4180 15 1 0.5634 0.1173 2.4785 16 6 2.2600 1.4409 2.3773 17 6 1.8733 2.2030 3.6463 18 6 2.3990 1.4529 4.8718 19 6 1.7878 0.0509 4.9126 20 1 2.1627 -0.4837 5.7854 21 6 0.2642 0.1609 4.9969 22 6 2.1756 -0.7111 3.6432 23 1 -0.3634 0.5874 -0.8432 24 1 -0.3633 -1.0240 -0.0870 25 1 -0.3633 0.4365 0.9304 26 1 4.7841 -1.5245 -2.6796 27 1 1.8763 -2.6150 0.3643 28 1 1.9056 -2.5658 2.1436 29 1 0.4386 -2.0744 1.2637 30 1 3.3455 1.3625 2.3167 31 1 1.8852 1.9754 1.5043 32 1 0.7878 2.2814 3.7064 33 1 2.3083 3.2019 3.6170 34 1 2.1232 1.9956 5.7759 35 1 3.4845 1.3744 4.8117 36 1 -0.1713 -0.8379 5.0255 37 1 -0.0114 0.7039 5.9010 38 1 -0.1104 0.6954 4.1238 39 1 1.7406 -1.7101 3.6724 40 1 3.2611 -0.7892 3.5824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218569654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:56 Heat of formation + Delta-G solvation = -12.911973 kcal Electronic energy + Delta-G solvation = -17266.786156 eV Core-core repulsion = 14887.801618 eV Total energy + Delta-G solvation = -2378.984539 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39767 -36.33414 -32.35010 -31.56410 -30.36678 -28.33340 -26.61634 -25.46714 -24.62057 -21.82626 -21.28802 -18.97152 -18.20233 -16.68431 -15.84290 -14.94895 -14.32182 -14.02184 -13.83723 -13.43122 -13.31626 -13.09088 -12.61630 -12.40332 -12.18760 -11.77335 -11.50417 -11.35410 -11.19778 -10.91099 -10.75113 -10.63552 -10.56673 -10.50626 -10.07848 -9.98532 -9.69837 -9.56721 -9.36131 -8.95359 -8.41247 -7.07569 -5.96760 -4.01562 3.55215 3.59412 3.69518 4.65826 4.74496 4.92423 4.93998 5.18847 5.39989 5.51494 5.55557 5.61270 5.68331 5.75805 5.84124 5.89197 6.00337 6.05482 6.12344 6.17389 6.25893 6.31024 6.37979 6.40580 6.42913 6.45733 6.52332 6.57007 6.63553 6.71175 6.80742 7.00159 7.08277 7.33004 7.75285 8.14777 8.38180 8.67522 9.04880 9.69451 11.13428 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032847 B = 0.010274 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.232827 B = 2724.628563 C = 3003.408638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.047 0.953 4 C -0.512 4.512 5 H 0.069 0.931 6 C 0.084 3.916 7 N -0.902 5.902 8 Si 0.910 3.090 9 H -0.270 1.270 10 H -0.313 1.313 11 H -0.271 1.271 12 N -0.533 5.533 13 C 0.037 3.963 14 C 0.078 3.922 15 H 0.038 0.962 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.090 4.090 20 H 0.064 0.936 21 C -0.149 4.149 22 C -0.110 4.110 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.011 0.989 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 4.478 14.446 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.064 0.936 4 C -0.551 4.551 5 H 0.087 0.913 6 C -0.119 4.119 7 N -0.540 5.540 8 Si 0.740 3.260 9 H -0.195 1.195 10 H -0.242 1.242 11 H -0.196 1.196 12 N -0.258 5.258 13 C -0.111 4.111 14 C -0.030 4.030 15 H 0.055 0.945 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.109 4.109 20 H 0.082 0.918 21 C -0.206 4.206 22 C -0.148 4.148 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.691 4.399 14.314 15.423 hybrid contribution -0.165 0.381 0.492 0.644 sum -3.856 4.779 14.807 16.030 Atomic orbital electron populations 1.22276 1.00379 1.00677 0.99013 1.19865 0.89536 0.95582 0.88722 0.93557 1.20884 0.92804 1.36206 1.05165 0.91297 1.24978 0.98548 0.94119 0.94260 1.69975 1.14401 1.39659 1.29919 0.86304 0.78468 0.80985 0.80202 1.19515 1.24165 1.19589 1.62657 1.59536 1.02126 1.01452 1.22156 0.96218 0.91070 1.01617 1.21629 0.96876 0.93447 0.91078 0.94461 1.21682 1.01397 0.95405 0.96860 1.21569 1.00767 0.98327 0.94965 1.21552 1.00234 0.95584 0.97639 1.21101 0.95656 0.96119 0.98013 0.91801 1.21925 0.95790 1.01387 1.01490 1.21710 1.01463 0.98386 0.93243 0.93359 0.93343 0.95198 0.92886 0.90150 0.93731 0.97070 0.91783 0.91641 0.92075 0.92486 0.92656 0.92148 0.93102 0.93357 0.91945 0.91995 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.40 37.16 0.31 -3.06 16 2 C 0.17 3.93 1.44 -68.87 -0.10 3.84 16 3 H 0.05 1.13 4.72 -51.93 -0.25 0.88 16 4 C -0.51 -14.33 7.80 -34.44 -0.27 -14.60 16 5 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 6 C 0.08 2.46 5.46 -17.82 -0.10 2.36 16 7 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 8 Si 0.91 23.38 26.00 -169.99 -4.42 18.96 16 9 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 11 H -0.27 -6.64 6.47 56.52 0.37 -6.28 16 12 N -0.53 -11.47 2.89 -228.30 -0.66 -12.13 16 13 C 0.04 0.77 8.54 60.06 0.51 1.28 16 14 C 0.08 1.39 1.39 -67.72 -0.09 1.30 16 15 H 0.04 0.66 4.62 -51.93 -0.24 0.42 16 16 C -0.12 -2.01 4.98 -26.74 -0.13 -2.14 16 17 C -0.12 -1.61 5.65 -26.73 -0.15 -1.76 16 18 C -0.11 -1.40 5.45 -26.73 -0.15 -1.55 16 19 C -0.09 -1.15 3.20 -90.60 -0.29 -1.44 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.15 -1.76 8.50 37.15 0.32 -1.44 16 22 C -0.11 -1.73 4.38 -26.71 -0.12 -1.84 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 1.00 6.66 -51.93 -0.35 0.65 16 25 H 0.03 0.54 6.30 -51.93 -0.33 0.22 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 27 H 0.08 1.88 7.12 -51.94 -0.37 1.51 16 28 H 0.04 0.81 6.01 -51.93 -0.31 0.50 16 29 H 0.01 0.21 6.39 -51.93 -0.33 -0.12 16 30 H 0.06 1.21 7.68 -51.93 -0.40 0.82 16 31 H 0.06 1.21 6.30 -51.92 -0.33 0.89 16 32 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.79 4.81 -51.92 -0.25 0.54 16 39 H 0.06 0.95 6.26 -51.93 -0.33 0.63 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 283.45 15.07 4.27 4.27 Total: -1.00 -29.53 283.45 -7.07 -36.60 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.78 Total: -1.57 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.26 Total: -19.05 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.11 Total: -39.20 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.42 Total: 18.96 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.53 -7.07 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218569654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.684 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds