Wall clock time and date at job start Mon Mar 30 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46886 * 2 1 4 4 C 1.50699 * 109.46716 * 240.01205 * 2 1 3 5 5 H 1.07999 * 120.00548 * 356.12554 * 4 2 1 6 6 C 1.37880 * 119.99950 * 176.13280 * 4 2 1 7 7 N 1.31519 * 119.99934 * 174.03163 * 6 4 2 8 8 Si 1.86800 * 120.00050 * 354.02881 * 6 4 2 9 9 H 1.48499 * 109.47042 * 84.85264 * 8 6 4 10 10 H 1.48500 * 109.47279 * 204.85281 * 8 6 4 11 11 H 1.48500 * 109.46911 * 324.85695 * 8 6 4 12 12 N 1.46893 * 109.47449 * 120.00859 * 2 1 3 13 13 C 1.46900 * 111.00116 * 58.95602 * 12 2 1 14 14 C 1.46902 * 110.99998 * 294.99401 * 12 2 1 15 15 H 1.09004 * 109.46541 * 60.00574 * 14 12 2 16 16 C 1.52991 * 109.47719 * 300.00444 * 14 12 2 17 17 C 1.52996 * 109.47732 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46985 * 59.99717 * 17 16 14 19 19 C 1.53001 * 109.47224 * 300.00285 * 18 17 16 20 20 H 1.09001 * 109.47468 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47313 * 300.00014 * 19 18 17 22 22 C 1.52999 * 109.47178 * 180.02562 * 14 12 2 23 23 H 1.08995 * 109.47370 * 55.13717 * 1 2 3 24 24 H 1.09001 * 109.46751 * 175.14202 * 1 2 3 25 25 H 1.09001 * 109.46756 * 295.13285 * 1 2 3 26 26 H 0.97003 * 119.99648 * 180.02562 * 7 6 4 27 27 H 1.08989 * 109.47219 * 59.99825 * 13 12 2 28 28 H 1.09003 * 109.46883 * 180.02562 * 13 12 2 29 29 H 1.09003 * 109.46631 * 299.99514 * 13 12 2 30 30 H 1.08999 * 109.47134 * 300.00187 * 16 14 12 31 31 H 1.09009 * 109.47077 * 59.99211 * 16 14 12 32 32 H 1.09004 * 109.46722 * 300.00249 * 17 16 14 33 33 H 1.08994 * 109.47251 * 180.02562 * 17 16 14 34 34 H 1.08995 * 109.47145 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.46982 * 59.99968 * 18 17 16 36 36 H 1.08997 * 109.47342 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.47180 * 300.00331 * 21 19 18 38 38 H 1.09009 * 109.47189 * 59.99816 * 21 19 18 39 39 H 1.09006 * 109.47213 * 300.00494 * 22 14 12 40 40 H 1.08998 * 109.46982 * 60.00071 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 -1.2306 5 1 1.3325 -1.1748 -1.9094 6 6 3.3853 -0.7668 -1.4900 7 7 3.8322 -1.4844 -2.4974 8 14 4.5835 0.1756 -0.4104 9 1 4.9197 -0.6395 0.7845 10 1 5.8217 0.4624 -1.1784 11 1 3.9615 1.4532 0.0210 12 7 2.0197 -0.6926 1.1992 13 6 1.5285 -2.0763 1.2456 14 6 1.6489 0.0389 2.4180 15 1 0.5634 0.1173 2.4785 16 6 2.2600 1.4409 2.3773 17 6 1.8733 2.2030 3.6463 18 6 2.3990 1.4529 4.8718 19 6 1.7878 0.0509 4.9126 20 1 2.1627 -0.4837 5.7854 21 6 0.2642 0.1609 4.9969 22 6 2.1756 -0.7111 3.6432 23 1 -0.3634 0.5874 -0.8432 24 1 -0.3633 -1.0240 -0.0870 25 1 -0.3633 0.4365 0.9304 26 1 4.7841 -1.5245 -2.6796 27 1 1.8763 -2.6150 0.3643 28 1 1.9056 -2.5658 2.1436 29 1 0.4386 -2.0744 1.2637 30 1 3.3455 1.3625 2.3167 31 1 1.8852 1.9754 1.5043 32 1 0.7878 2.2814 3.7064 33 1 2.3083 3.2019 3.6170 34 1 2.1232 1.9956 5.7759 35 1 3.4845 1.3744 4.8117 36 1 -0.1713 -0.8379 5.0255 37 1 -0.0114 0.7039 5.9010 38 1 -0.1104 0.6954 4.1238 39 1 1.7406 -1.7101 3.6724 40 1 3.2611 -0.7892 3.5824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218569654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:56 Heat of formation + Delta-G solvation = -30.554892 kcal Electronic energy + Delta-G solvation = -17267.551211 eV Core-core repulsion = 14887.801618 eV Total energy + Delta-G solvation = -2379.749593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73580 -37.84017 -34.45552 -32.71131 -32.04349 -29.77952 -27.67535 -27.46729 -26.20125 -23.13902 -22.69649 -20.62158 -19.43330 -18.79122 -17.23131 -16.56134 -15.95992 -15.37824 -15.25591 -15.00894 -14.66202 -14.55265 -14.39743 -13.75438 -13.58465 -13.18072 -13.09543 -12.77887 -12.63243 -12.54563 -12.30778 -12.10274 -11.89178 -11.83366 -11.75910 -11.63761 -11.33385 -10.93803 -10.88321 -10.77331 -10.54644 -8.75797 -8.23164 -6.30616 1.43983 1.52744 1.60352 2.50316 3.01651 3.50100 3.82911 3.85021 4.09799 4.30244 4.38207 4.45507 4.51062 4.55416 4.56942 4.61453 4.68274 4.70795 4.76746 4.83013 4.90128 5.01263 5.05900 5.11865 5.15668 5.19636 5.29684 5.33542 5.35413 5.39736 5.45752 5.51544 5.53667 5.65291 5.73304 6.15257 6.55225 6.70666 6.89779 7.43403 8.90193 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032847 B = 0.010274 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.232827 B = 2724.628563 C = 3003.408638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 H 0.042 0.958 4 C -0.509 4.509 5 H 0.030 0.970 6 C 0.033 3.967 7 N -0.949 5.949 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.318 1.318 11 H -0.253 1.253 12 N -0.551 5.551 13 C 0.045 3.955 14 C 0.080 3.920 15 H 0.047 0.953 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.085 4.085 20 H 0.080 0.920 21 C -0.146 4.146 22 C -0.108 4.108 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.262 0.738 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 5.826 17.662 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.060 0.940 4 C -0.548 4.548 5 H 0.048 0.952 6 C -0.166 4.166 7 N -0.590 5.590 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.247 1.247 11 H -0.178 1.178 12 N -0.276 5.276 13 C -0.103 4.103 14 C -0.028 4.028 15 H 0.065 0.935 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.104 4.104 20 H 0.098 0.902 21 C -0.204 4.204 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.467 5.757 17.548 19.001 hybrid contribution -0.001 -0.081 -0.526 0.532 sum -4.468 5.676 17.022 18.492 Atomic orbital electron populations 1.22151 0.98212 1.00620 1.00514 1.19649 0.91302 0.94591 0.87775 0.93976 1.21150 0.92089 1.35194 1.06348 0.95209 1.25718 1.00359 0.95052 0.95432 1.70099 1.14706 1.41965 1.32183 0.85375 0.76218 0.80428 0.78254 1.19489 1.24699 1.17767 1.62383 1.60224 1.02685 1.02339 1.22053 0.96924 0.90464 1.00878 1.21728 0.97536 0.93594 0.89955 0.93518 1.21693 0.99981 0.95415 0.98472 1.21538 1.01621 0.98441 0.93409 1.21564 0.99842 0.95433 0.98031 1.21093 0.96564 0.96055 0.96724 0.90184 1.21900 0.94714 1.01715 1.02029 1.21690 1.00313 0.98782 0.93777 0.93343 0.93930 0.92418 0.92939 0.94048 0.91340 0.95837 0.93762 0.93226 0.90923 0.91330 0.90106 0.92745 0.92954 0.91384 0.92885 0.91779 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.21 8.40 71.98 0.60 -5.61 16 2 C 0.17 8.03 1.44 44.17 0.06 8.09 16 3 H 0.04 2.01 4.72 -2.38 -0.01 2.00 16 4 C -0.51 -29.27 7.80 25.60 0.20 -29.07 16 5 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 6 C 0.03 1.96 5.46 84.65 0.46 2.43 16 7 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 8 Si 0.97 49.02 26.00 68.60 1.78 50.80 16 9 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16 11 H -0.25 -11.95 6.47 99.48 0.64 -11.31 16 12 N -0.55 -23.16 2.89 -876.22 -2.53 -25.69 16 13 C 0.04 1.80 8.54 127.69 1.09 2.89 16 14 C 0.08 2.64 1.39 44.91 0.06 2.70 16 15 H 0.05 1.49 4.62 -2.38 -0.01 1.48 16 16 C -0.12 -3.81 4.98 30.59 0.15 -3.66 16 17 C -0.11 -2.64 5.65 30.59 0.17 -2.47 16 18 C -0.11 -2.30 5.45 30.59 0.17 -2.14 16 19 C -0.09 -1.83 3.20 -10.78 -0.03 -1.87 16 20 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 21 C -0.15 -2.81 8.50 71.98 0.61 -2.20 16 22 C -0.11 -3.07 4.38 30.61 0.13 -2.94 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.04 1.72 6.66 -2.39 -0.02 1.70 16 25 H 0.06 1.96 6.30 -2.39 -0.02 1.94 16 26 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.04 1.97 7.12 -2.39 -0.02 1.95 16 28 H 0.07 2.39 6.01 -2.39 -0.01 2.38 16 29 H 0.02 0.87 6.39 -2.39 -0.02 0.86 16 30 H 0.04 1.59 7.68 -2.39 -0.02 1.57 16 31 H 0.05 1.74 6.30 -2.38 -0.02 1.72 16 32 H 0.07 1.57 6.43 -2.38 -0.02 1.55 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.12 4.81 -2.38 -0.01 1.11 16 39 H 0.06 1.78 6.26 -2.38 -0.01 1.76 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -65.05 283.45 4.17 -60.87 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.93 Total: 8.23 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 3.69 Total: -33.83 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -2.23 Total: -86.07 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.78 Total: 50.80 kcal Total: -65.05 4.17 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218569654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.318 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds